BAC Information

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BAC

Clone NameB6Ng01-060O11
Chromosome10 (Build37)13 (Build37)
Map Location 104,053,471 - 104,054,36336,318,462 - 36,319,629
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060O11.bB6Ng01-060O11.g
ACCDH881745DH881746
length1,0211,156
definitionDH881745|Mus musculus domesticus DNA, BAC clone: B6Ng01-060O11, 5' end.DH881746|Mus musculus domesticus DNA, BAC clone: B6Ng01-060O11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,471 - 104,054,363)(36,318,462 - 36,319,629)
sequence
gaattctcacctgaggaatactgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tctatttcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggaggttcctca
gaaaattggacatagtactactggaggatcctgcaatacctctcctgggc
atatatacagaagatgtcccaactggtaagaagaacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gtccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gaatactactcagctattaaaaaaatgaatttatgaaattcctaggcaaa
tggatggacctggagggtatcatcctgagtgaggtaacccaatcacaaag
gaactcgcacaatatgtactcactgataagtggatattagcccagaaact
taggatacccaagatataagatacaacttgccaaacgcatgaaattcaag
aagaatgaagaccaaagtgtggacactttaccctttcttagaaatgggaa
caaaacacccatggaaggagttacagagcatatcttaatagtaaaagaaa
ttctgggctagtgagatggctcagccattaagaatgcttgctattccttc
tcaagacctgagttcaattcccagcattcacatagcagctaactgtttgt
aattatagtctctgggagagctgatgctcttttctagcttctgtaggcct
ttggtactactcatttacagatatataggcaagcaaacatccataaatac
taaataaataaatacaatagttagaatttaaaagtactttgatttctatt
cactagccatctgatgattat
gaattcccttgaataatggaagtaggcttgctttaactttgctgctcctt
ccttgctttctgagtgattttctgcatgtttgatgtatttgcacaaacat
tccagtgcttctgatttgttgaaaatggtttactgcattccataattgaa
ttgattaggccacaacttgcctttcagcgttatctgctacctctgtaact
tgaagaagacacacacttttagttggaggttttatctgtgtacagaggtg
gcatgggggtagagttaatggtgacaggctgtgtgtggttcagaggaggg
tcatgtgctttaaaagtgagagtacactttattactaatgttcgatatac
attagtcttatcaggcaagtactttgagtttggagaaaggcacaccaggg
gaccatgcacattgcatttagttttcttatgtagtagctaagagctgctc
caggctcctttgtcatggcttccatggtgatcctttaggaaaggacagaa
tgaactattcttcttacagcattgtgtgaagctttcagctaagttttagc
tttagctattattatttgagatgccatccttagctgtggttcaggaaaac
aaacaaacaaacaaacaagcacagaaagagctacatttgattaaaattga
aggtgtttacttcttacatgttcaaatgtttcttttcaggtctaatgcag
atttaagagaattttccattttttctttgctaacaatgtaatggcatttg
tgccaaagagagatcataaacttaagaacatagagaagcataaggtgatt
aacacattataaagtatatgtaggctgtgtgctctgttgacagcttacag
agtgggagaagatcttgccagacaagtgttatatctagaatgtataaaga
aaaaattaaatatcaaagacagactatcagtcaaaatggtgaataaaatg
atagacagttctcccagagaaaaaacataaatggctaataatattgtttt
agtggttcagaatccttagctttcaccaaatccagttataacctctgaaa
tatcatcttacttcagtcagcatgtcctctcaccaggaaacaagattaga
aatgcctagcttagtatgggaaaagaaaccaccctctctgatgtggtgga
ctggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053471_104054363
seq2: B6Ng01-060O11.b_48_728 (reverse)

seq1  GCAAAGTGTCCACACTTTGGTCTTCGTTC-TCTTGAGTTTAATGTGTTTA  49
      | ||||||||||||||||||||||| ||| |||||| ||| ||| |||| 
seq2  GTAAAGTGTCCACACTTTGGTCTTCATTCTTCTTGAATTTCATGCGTTTG  50

seq1  GCAAATTGTATCTTATATCTTGGGTATCCTAAGTTTCTGGGCTAATATCC  99
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTGTATCTTATATCTTGGGTATCCTAAGTTTCTGGGCTAATATCC  100

seq1  ACTTATCAGTGAGTACATATTGCGCGAGTTCCTTTGTGATTGGGTTACCG  149
      |||||||||||||||||||||| |||||||||||||||||||||||||| 
seq2  ACTTATCAGTGAGTACATATTGTGCGAGTTCCTTTGTGATTGGGTTACCT  150

seq1  CACTCAGGATGATACTCTCCAGGTCCATCCATTTGCCTAGGAATTTCATA  199
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CACTCAGGATGATACCCTCCAGGTCCATCCATTTGCCTAGGAATTTCATA  200

seq1  AATTCATTCTTTTTAATAGCTCCATTTACATTTAATTTAATTAATGTAAT  249
      |||||||| |||||||||||                              
seq2  AATTCATT-TTTTTAATAGC------------------------------  219

seq1  TACAATTAATTAATTTATTAATTAAATAATTTAATAATTTAATTGATAAA  299
                                                        
seq2  --------------------------------------------------  219

seq1  TTAATTTAATTAATTAATTTAATTAATTAAATTAAATAATAATTTAATAA  349
                                                        
seq2  --------------------------------------------------  219

seq1  TAAATTAAATATTTTAAAATTAATAATAATTTTATAAGTAAATAATTTAA  399
                                        | ||||          
seq2  ----------------------------------TGAGTA----------  225

seq1  TTAATGTAATTTAATTAATGTAATTACATTACATTTAATAGCTCCATTGT  449
                         |||                    ||||||||
seq2  -------------------GTA-------------------TTCCATTGT  237

seq1  GTAAATGTACCACATTTTCTGTATCTATTCCTCTGTTGAGGGGCATCTGG  499
      ||||||||||||||||||||||||| |||||||||||||||| |||||||
seq2  GTAAATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGACATCTGG  287

seq1  GTTCTTTCCAGCTCCTGGCTATTATAAATAAGGCTGCTATGAATATAGTG  549
      ||||||||||||| ||||||||||||||||||||||||||||| ||||||
seq2  GTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTG  337

seq1  GAGCATGTGTCCTTCTTACCGGTTGGGGCATCTTCTGGATATATGCCCAG  599
      |||||||||| ||||||||| |||||| ||||||||| ||||||||||||
seq2  GAGCATGTGTTCTTCTTACCAGTTGGGACATCTTCTGTATATATGCCCAG  387

seq1  AAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAATTTTCTGACGA  649
       ||||||||||| ||||||||| |||||||||||||||||||||||| ||
seq2  GAGAGGTATTGCAGGATCCTCCAGTAGTACTATGTCCAATTTTCTGAGGA  437

seq1  ACCGCCAGACGGATTTCCAGAGTGGTTGTACAAGCCTGCAATCCCACCAA  699
      ||| |||||| |||||||||||||||||||||||| ||||||||||||||
seq2  ACCTCCAGACTGATTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACCAA  487

seq1  CAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTC  749
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CAATGGAGGAGTGTTCCCCTTTCTCCACATCCTCGCCAGCATCTGCTGTC  537

seq1  ACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCA  799
      ||||||||||||||||||||||||||||||||||||||  | ||||||||
seq2  ACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAAATAGAATCTCA  587

seq1  GGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTT  637

seq1  TTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAATTC  893
      |||||||||||||||||||||| |||||||||||||||||||||
seq2  TTCAGGTGCTTCTCTGCCATTCAGTATTCCTCAGGTGAGAATTC  681

seq1: chr13_36318462_36319629
seq2: B6Ng01-060O11.g_70_1225

seq1  GAATTCCCTTGAATAATGGAAGTAGGCTTGCTTTAACTTTGCTGCTCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTGAATAATGGAAGTAGGCTTGCTTTAACTTTGCTGCTCCTT  50

seq1  CCTTGCTTTCTGAGTGATTTTCTGCATGTTTGATGTATTTGCACAAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTTTCTGAGTGATTTTCTGCATGTTTGATGTATTTGCACAAACAT  100

seq1  TCCAGTGCTTCTGATTTGTTGAAAATGGTTTACTGCATTCCATAATTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGCTTCTGATTTGTTGAAAATGGTTTACTGCATTCCATAATTGAA  150

seq1  TTGATTAGGCCACAACTTGCCTTTCAGCGTTATCTGCTACCTCTGTAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTAGGCCACAACTTGCCTTTCAGCGTTATCTGCTACCTCTGTAACT  200

seq1  TGAAGAAGACACACACTTTTAGTTGGAGGTTTTATCTGTGTACAGAGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAGACACACACTTTTAGTTGGAGGTTTTATCTGTGTACAGAGGTG  250

seq1  GCATGGGGGTAGAGTTAATGGTGACAGGCTGTGTGTGGTTCAGAGGAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGGGTAGAGTTAATGGTGACAGGCTGTGTGTGGTTCAGAGGAGGG  300

seq1  TCATGTGCTTTAAAAGTGAGAGTACACTTTATTACTAATGTTCGATATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGCTTTAAAAGTGAGAGTACACTTTATTACTAATGTTCGATATAC  350

seq1  ATTAGTCTTATCAGGCAAGTACTTTGAGTTTGGAGAAAGGCACACCAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTCTTATCAGGCAAGTACTTTGAGTTTGGAGAAAGGCACACCAGGG  400

seq1  GACCATGCACATTGCATTTAGTTTTCTTATGTAGTAGCTAAGAGCTGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGCACATTGCATTTAGTTTTCTTATGTAGTAGCTAAGAGCTGCTC  450

seq1  CAGGCTCCTTTGTCATGGCTTCCATGGTGATCCTTTAGGAAAGGACAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCCTTTGTCATGGCTTCCATGGTGATCCTTTAGGAAAGGACAGAA  500

seq1  TGAACTATTCTTCTTACAGCATTGTGTGAAGCTTTCAGCTAAGTTTTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTATTCTTCTTACAGCATTGTGTGAAGCTTTCAGCTAAGTTTTAGC  550

seq1  TTTAGCTATTATTATTTGAGATGCCATCCTTAGCTGTGGTTCAGGAAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTATTATTATTTGAGATGCCATCCTTAGCTGTGGTTCAGGAAAAC  600

seq1  AAACAAACAAACAAACAAGCACAGAAAGAGCTACATTTGATTAAAATTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAAACAAGCACAGAAAGAGCTACATTTGATTAAAATTGA  650

seq1  AGGTGTTTACTTCTTACATGTTCAAATGTTTCTTTTCAGGTCTAATGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTTACTTCTTACATGTTCAAATGTTTCTTTTCAGGTCTAATGCAG  700

seq1  ATTTAAGAGAATTTTCCA-TTTTTCTTTGCTAACAATGTAATGGCATTTG  749
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATTTAAGAGAATTTTCCATTTTTTCTTTGCTAACAATGTAATGGCATTTG  750

seq1  TGCCAAAGAGAGATCATAAACTTAAGAACATAGAGAAGCATAAGGTGATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAAGAGAGATCATAAACTTAAGAACATAGAGAAGCATAAGGTGATT  800

seq1  AACACATTATAAAGTATATGTAGGCTGTGTGCTCTGTTGACAGCTTACAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATTATAAAGTATATGTAGGCTGTGTGCTCTGTTGACAGCTTACAG  850

seq1  AGTGGGAGAAGATCTTTGCCAGACAAGGTGTTAATATCTAGAATGTATAA  899
      |||||||||||||| ||||||||||| ||||| |||||||||||||||||
seq2  AGTGGGAGAAGATC-TTGCCAGACAA-GTGTT-ATATCTAGAATGTATAA  897

seq1  AGAAAAAAATTAAATATCAAAAGAACAGAACTATCAGTCAAAATGGTGAA  949
      || ||||||||||||||||||   |||| |||||||||||||||||||||
seq2  AG-AAAAAATTAAATATCAAA--GACAG-ACTATCAGTCAAAATGGTGAA  943

seq1  TAAAATGAATAGACAGTTCT-CCAGAGAAAAAACATAAATGGCTAATAAA  998
      ||||||| |||||||||||| |||||||||||||||||||||||||| ||
seq2  TAAAATG-ATAGACAGTTCTCCCAGAGAAAAAACATAAATGGCTAAT-AA  991

seq1  TATTTGTTTTAAGTGTTCAGTATCCTTAGCTGTCAACAAATCCAAGTTAT  1048
      || ||||||||   |||||| |||||||||| ||| ||||||| ||||||
seq2  TA-TTGTTTTAGTGGTTCAGAATCCTTAGCTTTCACCAAATCC-AGTTAT  1039

seq1  AACC-CTGAAAATACATCTTACTTCAGTCAGCATGGCCTC-CACCAGGAA  1096
      |||| ||||||   ||||||||||||||||||||| |||| |||||||||
seq2  AACCTCTGAAATATCATCTTACTTCAGTCAGCATGTCCTCTCACCAGGAA  1089

seq1  ACAAAAGAGTAAGAAATG-CTAGC-TAGTATGGGGAAAAGAAAACCAACC  1144
      |||| |   | ||||||| ||||| |||||| |||||||| |||||| ||
seq2  ACAAGA---TTAGAAATGCCTAGCTTAGTAT-GGGAAAAG-AAACCACCC  1134

seq1  -CTCTGAATTGTGGTGGGACTGGGA  1168
       ||||||  |||||| |||||||||
seq2  TCTCTGA--TGTGGT-GGACTGGGA  1156