BAC Information

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BAC

Clone NameB6Ng01-061D15
Chromosome13 (Build37)
Map Location 36,684,570 - 36,817,458
singlet/doubletdoublet
Overlap genenone
Upstream geneCdyl, Rpp40, LOC100041568, Ppp1r3g, Lyrm4, LOC100042773, Fars2, LOC100041590, LOC666758
Downstream geneNrn1, F13a1, Ly86, LOC100042794, LOC100042800, LOC100042802, LOC100041624
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061D15.bB6Ng01-061D15.g
ACCDH881962DH881963
length1,134650
definitionDH881962|Mus musculus domesticus DNA, BAC clone: B6Ng01-061D15, 5' end.DH881963|Mus musculus domesticus DNA, BAC clone: B6Ng01-061D15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,684,570 - 36,685,713)(36,816,810 - 36,817,458)
sequence
gaattcactctgtttaatctaatagttggattttaggaatgtatatgagg
cagggaagaacaggaaaaagcttgccttaggctaccctagaattgggctc
ttgagctttgagaagataaacatctcccagacactaaacttactgaagac
tgttggtactgacggagacagtctgtactgtgttaggaagaaggacaatg
cttgggagaatactccagtcagaaccccactcccctcctggtgggatggg
catagtggtgaggctaccatggaaacagcatcaaggcccttacaaaagta
aagagagaagcacagcatggtccagcaatctactctggagtatacaccct
aaggaactgacatcactgtgtcgaagcctctgtgctgtctccaacctcat
agtaacactcttgacaacagctcagattcagaaagaaacagcagaagaat
gggttaagaaaatgtgttatgcttttcacagatagctcatttgtaaaatg
attccatttcattcaacctttgaaaaggaggaaaccaggggctggaaaga
tgccccagtggttaagagcacctacttgctcttgcagagaatctacattt
ggtacccagcatcaatattgggttggcgaggctcacaaccacctgtaact
ccagttccagggggacttcacagaagtgaacattgggacgagcaggcaca
catacatgcacataaataagtaatgattaaaatgaataaaaaataaaaaa
ggaagaaatagcacattgagacaagatggatgaacccgagcagagtaggc
tgagtgagaaaagctggacaaagaagaacaagtatggtgagcactgcaag
atcccaggttcacggggttctgagaacagccacagaagagacagtggaat
ggtggtttctaggggctgggggaaggtagcaggagctgttgtgcagttaa
tgtgagcttgcagttatgctgggagactggaataaacatctatccacagc
atgagcctggaataagtcatgctgtatatatcacacctttacatgtgtaa
taaagatcaatttcacagtattgatctttcccagacataaaacagggtac
cgaagagaggcgcaggagctttcggaagattgtt
gaattcttgggggaacacacggtgacaggtgataaattcacctgctcacc
aaactgtctggatgaccctgctgacttcatgggaaccttaattagggaca
cttggccatgtctcctacattctgcttatactggggaggtgggggaggtc
gttttcaaattaagagcaaggcctttactacatgcactggaggaccggtc
ttgcacacacagatacattgccggtggtcagccggctgcccaggcaccag
gtgggcctgagccctaaccacggttccttgggctgggccctaacaaccac
acgcagcttcctctgtggtgactagaggtagcctgcaaaggaaccgccat
taagggctcctcagaggggcagaggcgaggatcgggcgaatcctttcata
attaataagacagcacaactgaaatggcgagaagacggggcctattgatc
tgccattcgatctgcccccttctttcctatttataggctcctcatggcct
cacaaataagtaaataggcgcagtccagacccaggtcctgggtctgcagt
catggtgtaggctgtgggggacggagaactacacataagctcttggattc
attgaaatcaaaatctgatttcgctgaaggtagggttgggaggggagttt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_36684570_36685713
seq2: B6Ng01-061D15.b_46_1179

seq1  GAATTCACTCTGTTTAATCTAATAGTTGGATTATAGGAATGTATATGAGG  50
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAATTCACTCTGTTTAATCTAATAGTTGGATTTTAGGAATGTATATGAGG  50

seq1  CAGGGAAGAACAGGAAAAAGCTTGCCTTAGGCTACCCTAGAATTGGGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAGAACAGGAAAAAGCTTGCCTTAGGCTACCCTAGAATTGGGCTC  100

seq1  TTGAGCTTTGAGAAGATAAACATCTCCCAGACACTAAACTTACTGAAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTTTGAGAAGATAAACATCTCCCAGACACTAAACTTACTGAAGAC  150

seq1  TGTTGGTACTGACGGAGACAGTCTGTACTGTGTTAGGAAGAAGGACAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTACTGACGGAGACAGTCTGTACTGTGTTAGGAAGAAGGACAATG  200

seq1  CTTGGGAGAATACTCCAGTCAGAACCCCACTCCCCTCCTGGTGGGATGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAGAATACTCCAGTCAGAACCCCACTCCCCTCCTGGTGGGATGGG  250

seq1  CATAGTGGTGAGGCTACCATGGAAACAGCATCAAGGCCCTTACAAAAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGGTGAGGCTACCATGGAAACAGCATCAAGGCCCTTACAAAAGTA  300

seq1  AAGAGAGAAGCACAGCATGGTCCAGCAATCTACTCTGGAGTATACACCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGAAGCACAGCATGGTCCAGCAATCTACTCTGGAGTATACACCCT  350

seq1  AAGGAACTGACATCACTGTGTCGAAGCCTCTGTGCTGTCTCCAACCTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACTGACATCACTGTGTCGAAGCCTCTGTGCTGTCTCCAACCTCAT  400

seq1  AGTAACACTCTTGACAACAGCTCAGATTCAGAAAGAAACAGCAGAAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACACTCTTGACAACAGCTCAGATTCAGAAAGAAACAGCAGAAGAAT  450

seq1  GGGTTAAGAAAATGTGTTATGCTTTTCACAGATAGCTCATTTGTAAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAAGAAAATGTGTTATGCTTTTCACAGATAGCTCATTTGTAAAATG  500

seq1  ATTCCATTTCATTCAACCTTTGAAAAGGAGGAAACCAGGGGCTGGAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATTTCATTCAACCTTTGAAAAGGAGGAAACCAGGGGCTGGAAAGA  550

seq1  TGCCCCAGTGGTTAAGAGCACCTACTTGCTCTTGCAGAGAATCTACATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCAGTGGTTAAGAGCACCTACTTGCTCTTGCAGAGAATCTACATTT  600

seq1  GGTACCCAGCATCAATATTGGGTTGGCGAGGCTCACAACCACCTGTAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCCAGCATCAATATTGGGTTGGCGAGGCTCACAACCACCTGTAACT  650

seq1  CCAGTTCCAGGGGGACTTCACAGAAGTGAACATTGGGACGAGCAGGCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCCAGGGGGACTTCACAGAAGTGAACATTGGGACGAGCAGGCACA  700

seq1  CATACATGCACATAAATAAGTAATGATTAAAATGAATAAAAAATAAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATGCACATAAATAAGTAATGATTAAAATGAATAAAAAATAAAAAA  750

seq1  GGAAGAAATAGCACATTGAGACAAGATGGATGAACCCGAGCAGAGTAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAATAGCACATTGAGACAAGATGGATGAACCCGAGCAGAGTAGGC  800

seq1  TGAGTGAGAAAAGCTGGACAAAGAAGAACAAGTATGGTGAGCACTGCAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAGAAAAGCTGGACAAAGAAGAACAAGTATGGTGAGCACTGCAAG  850

seq1  ATCCCAGGTTCACGGGGTTCTGAGAACAGCCACAGAAGAGACAGTGGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGGTTCACGGGGTTCTGAGAACAGCCACAGAAGAGACAGTGGAAT  900

seq1  GGTGGTTTCTAGGGGCTGGGGGAAGGTAGCAGGAAGCTGTTGTGCAGTTA  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGTGGTTTCTAGGGGCTGGGGGAAGGTAGCAGG-AGCTGTTGTGCAGTTA  949

seq1  ATGTGAGCTTGCAGTTATGCTGGGAAGACTGGTAATAAACATCTATCCCA  1000
      |||||||||||||||||||||||| ||||||| ||||||||||||| |||
seq2  ATGTGAGCTTGCAGTTATGCTGGG-AGACTGG-AATAAACATCTAT-CCA  996

seq1  CAGCATTGAGCCTGGAATAAGTCATGCTGTATATATCACA-CTTTACATG  1049
      ||||| |||||||||||||||||||||||||||||||||| |||||||||
seq2  CAGCA-TGAGCCTGGAATAAGTCATGCTGTATATATCACACCTTTACATG  1045

seq1  TGTAATAAAGATCAATTTCACAGTAATTGATCTTACCACAGACATAAAAC  1099
      |||||||||||||||||||||||| ||||||||| || ||||||||||||
seq2  TGTAATAAAGATCAATTTCACAGT-ATTGATCTTTCC-CAGACATAAAAC  1093

seq1  AAGGGAACAGAAGAGAGGCGCAGGAAGCTTTCCGGAAGTATTGTT  1144
       |||| || ||||||||||||||| |||||| |||||| ||||||
seq2  -AGGGTACCGAAGAGAGGCGCAGG-AGCTTT-CGGAAG-ATTGTT  1134

seq1: chr13_36816810_36817458
seq2: B6Ng01-061D15.g_69_718 (reverse)

seq1  AAACT-CCCTCCCAACCCTACCTTCAGCGAAATCAGATTTTGATTTCAAT  49
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCCCTCCCAACCCTACCTTCAGCGAAATCAGATTTTGATTTCAAT  50

seq1  GAATCCAAGAGCTTATGTGTAGTTCTCCGTCCCCCACAGCCTACACCATG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCAAGAGCTTATGTGTAGTTCTCCGTCCCCCACAGCCTACACCATG  100

seq1  ACTGCAGACCCAGGACCTGGGTCTGGACTGCGCCTATTTACTTATTTGTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGACCCAGGACCTGGGTCTGGACTGCGCCTATTTACTTATTTGTG  150

seq1  AGGCCATGAGGAGCCTATAAATAGGAAAGAAGGGGGCAGATCGAATGGCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATGAGGAGCCTATAAATAGGAAAGAAGGGGGCAGATCGAATGGCA  200

seq1  GATCAATAGGCCCCGTCTTCTCGCCATTTCAGTTGTGCTGTCTTATTAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAATAGGCCCCGTCTTCTCGCCATTTCAGTTGTGCTGTCTTATTAAT  250

seq1  TATGAAAGGATTCGCCCGATCCTCGCCTCTGCCCCTCTGAGGAGCCCTTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAGGATTCGCCCGATCCTCGCCTCTGCCCCTCTGAGGAGCCCTTA  300

seq1  ATGGCGGTTCCTTTGCAGGCTACCTCTAGTCACCACAGAGGAAGCTGCGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCGGTTCCTTTGCAGGCTACCTCTAGTCACCACAGAGGAAGCTGCGT  350

seq1  GTGGTTGTTAGGGCCCAGCCCAAGGAACCGTGGTTAGGGCTCAGGCCCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGTTAGGGCCCAGCCCAAGGAACCGTGGTTAGGGCTCAGGCCCAC  400

seq1  CTGGTGCCTGGGCAGCCGGCTGACCACCGGCAATGTATCTGTGTGTGCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCCTGGGCAGCCGGCTGACCACCGGCAATGTATCTGTGTGTGCAA  450

seq1  GACCGGTCCTCCAGTGCATGTAGTAAAGGCCTTGCTCTTAATTTGAAAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGGTCCTCCAGTGCATGTAGTAAAGGCCTTGCTCTTAATTTGAAAAC  500

seq1  GACCTCCCCCACCTCCCCAGTATAAGCAGAATGTAGGAGACATGGCCAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCCCCCACCTCCCCAGTATAAGCAGAATGTAGGAGACATGGCCAAG  550

seq1  TGTCCCTAATTAAGGTTCCCATGAAGTCAGCAGGGTCATCCAGACAGTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTAATTAAGGTTCCCATGAAGTCAGCAGGGTCATCCAGACAGTTT  600

seq1  GGTGAGCAGGTGAATTTATCACCTGTCACCGTGTGTTCCCCCAAGAATTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGCAGGTGAATTTATCACCTGTCACCGTGTGTTCCCCCAAGAATTC  650