BAC Information

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BAC

Clone NameB6Ng01-061E08
Chromosome13 (Build37)3 (Build37)
Map Location 14,401,463 - 14,402,637127,391,165 - 127,391,227
singlet/doubletsingletsinglet
Overlap geneHecw1
Upstream geneLOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1, Lyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243, Arid4b, LOC100039916
Downstream geneMrpl32, Psma2, AW209491, EG665099, LOC670994
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061E08.bB6Ng01-061E08.g
ACCDH881994DH881995
length1,149823
definitionDH881994|Mus musculus domesticus DNA, BAC clone: B6Ng01-061E08, 5' end.DH881995|Mus musculus domesticus DNA, BAC clone: B6Ng01-061E08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(14,401,463 - 14,402,637)(127,391,165 - 127,391,227)
sequence
gaattcattttcacatatcctataaacaaagaaaaaacatctggatggat
ctttagggctcagcatcataagaaggattaaccactgtgatgccaggact
ttacttcgacccctgaaaacagtaccaattctacactgtggcagctcata
gtagtgtgtaggtcaggttgagttgtttaggataaaatgaattattgaat
accagattatgttttaacaagaactgaaacgtgtattgtctttatttttg
gattgtgtatttaagtattttaatcaatggtatatcctatttaaacttta
caaacatttgtctaattgccttcatcccatcactagctaataatatctct
agtataatataattaggtcaagctttaggctattcctaaccaaacctact
ctataaaaagttttttttttaaatcagtccaggctgaaactgagtcatta
ttaattcttattttcctcccatgtccatactcaatatgtaatcaaatttg
tcttccaaatgtatgttcaggtattaccattccttaacaatcccctgatg
ccaccctgatccatatcaccaatggtttcatcttggccactgcaatcacc
ttatgctgtattttatagacttctatttttcctctgcagtttattccctg
tacagcaacaaggggaagactttcaaaacacatgtcagaaataccacttc
cctgctcaaaacgctgtggtgtgtcctcattcagaataaaaggcaaacct
ctctggcagttttcaacctgtcagtctcaacaaacttttatctcccaaat
atttacactatgattcttaacagtagcaaaataacaaagtagcaacaaaa
ataatttcatggctgagggtcaccacgatatgaggcactgttttaagggt
cacagctttaggatgtttgagaacaattgcagcagtctacagagtccaga
tgatggtttgtactggtttccctgatatattattattccccttggatgcg
ttggttactctcagctatcatcatggagatgagtgtggctgctgctacgg
ctgctatcttgctgtaaacttctctcagcattatatgtgtactcccctgt
ccattattatggctcttaggagcctgcttagaatcagttctaactgcaa
gaattcacttccttaagtaagataaacccttaagaatctgagggttaaaa
gttctctggctcagtagggttcacgtacacagctccatgacaacttacaa
gatcccattccttaccattcagtgtccttgctttaaccacggacattctc
tgaggctgaaatttgaattttcattgtaactaagccaatcttatagtggg
ggctctaagttctatttttgaaacttgagctttctggctgctggagagaa
gattctcttccagggaacacttagaagcctttaaacagtttatataccca
gtcagttctatcaccaaggttgttcttttcctttgtcactttatcctgat
atgccttgacttgcttaattttatctaggagctcattcttcccacttttc
agtttatcctttgatactaagaagcaactaaccagtatccttactttcat
catctttctagaaattatcaatagctctgtatagagtcattaaacttctt
gttcatcactataggtgaatcaagatcatctgatgcatttatctaaataa
tttcactaaataatttatactatcgactatcagtgttttctgtgcttcta
agatagcctttggtaactgtaggtgtttgtgaattagaaagtctgttaca
gatactttaaaaaatcatccttaccgttgtttctctagaactactcctag
taacacaatctgtactagtgagagttctctaaaggaacaggatagatgga
tagatggatggaaagaaagaaagaaagagagagagagagagagagagaga
gagagagagagagagagagagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_14401463_14402637
seq2: B6Ng01-061E08.b_47_1195

seq1  GAATTCATTTTCACATATCCTATAAACAAAGAAAAAACATCTGGATGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTCACATATCCTATAAACAAAGAAAAAACATCTGGATGGAT  50

seq1  CTTTAGGGCTCAGCATCATAAGAAGGATTAACCACTGTGATGCCAGGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGGCTCAGCATCATAAGAAGGATTAACCACTGTGATGCCAGGACT  100

seq1  TTACTTCGACCCCTGAAAACAGTACCAATTCTACACTGTGGCAGCTCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCGACCCCTGAAAACAGTACCAATTCTACACTGTGGCAGCTCATA  150

seq1  GTAGTGTGTAGGTCAGGTTGAGTTGTTTAGGATAAAATGAATTATTGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGTGTAGGTCAGGTTGAGTTGTTTAGGATAAAATGAATTATTGAAT  200

seq1  ACCAGATTATGTTTTAACAAGAACTGAAACGTGTATTGTCTTTATTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATTATGTTTTAACAAGAACTGAAACGTGTATTGTCTTTATTTTTG  250

seq1  GATTGTGTATTTAAGTATTTTAATCAATGGTATATCCTATTTAAACTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTGTATTTAAGTATTTTAATCAATGGTATATCCTATTTAAACTTTA  300

seq1  CAAACATTTGTCTAATTGCCTTCATCCCATCACTAGCTAATAATATCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATTTGTCTAATTGCCTTCATCCCATCACTAGCTAATAATATCTCT  350

seq1  AGTATAATATAATTAGGTCAAGCTTTAGGCTATTCCTAACCAAACCTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAATATAATTAGGTCAAGCTTTAGGCTATTCCTAACCAAACCTACT  400

seq1  CTATAAAAAGTTTTTTTTTTAAATCAGTCCAGGCTGAAACTGAGTCATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAAAGTTTTTTTTTTAAATCAGTCCAGGCTGAAACTGAGTCATTA  450

seq1  TTAATTCTTATTTTCCTCCCATGTCCATACTCAATATGTAATCAAATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCTTATTTTCCTCCCATGTCCATACTCAATATGTAATCAAATTTG  500

seq1  TCTTCCAAATGTATGTTCAGGTATTACCATTCCTTAACAATCCCCTGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAAATGTATGTTCAGGTATTACCATTCCTTAACAATCCCCTGATG  550

seq1  CCACCCTGATCCATATCACCAATGGTTTCATCTTGGCCACTGCAATCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTGATCCATATCACCAATGGTTTCATCTTGGCCACTGCAATCACC  600

seq1  TTATGCTGTATTTTATAGACTTCTATTTTTCCTCTGCAGTTTATTCCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTGTATTTTATAGACTTCTATTTTTCCTCTGCAGTTTATTCCCTG  650

seq1  TACAGCAACAAGGGGAAGACTTTCAAAACACATGTCAGAAATACCACTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCAACAAGGGGAAGACTTTCAAAACACATGTCAGAAATACCACTTC  700

seq1  CCTGCTCAAAACGCTGTGGTGTGTCCTCATTCAGAATAAAAGGCAAACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCAAAACGCTGTGGTGTGTCCTCATTCAGAATAAAAGGCAAACCT  750

seq1  CTCTGGCAGTTTTCAACCTGTCAGTCTCAACAAACTTTTATCTCCCAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCAGTTTTCAACCTGTCAGTCTCAACAAACTTTTATCTCCCAAAT  800

seq1  ATTTACACTATGATTCTTAACAGTAGCAAAATAACAAAGTAGCAACAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACACTATGATTCTTAACAGTAGCAAAATAACAAAGTAGCAACAAAA  850

seq1  ATAATTTCATGGCTGAGGGTCACCACGATATGAGGCACTGTTTTAAAGGG  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATAATTTCATGGCTGAGGGTCACCACGATATGAGGCACTGTTTT-AAGGG  899

seq1  TCACAGCTTTAGGATGTTTGAGAACAATTGCAGCAGTCTACAGAGTCCCA  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCACAGCTTTAGGATGTTTGAGAACAATTGCAGCAGTCTACAGAGT-CCA  948

seq1  GATGATTGGTTTGTACTGTTTTCCCTTGATTATAATTATTATTCCCCTTG  1000
      ||||| |||||||||||| |||||| ||| ||| ||||||||||||||||
seq2  GATGA-TGGTTTGTACTGGTTTCCC-TGA-TAT-ATTATTATTCCCCTTG  994

seq1  GATGCGTTGGTTTTACTCTTCAAGCTTATCATCAT-GAGATGAGTGTGGC  1049
      ||||||||||  |||||||   ||| ||||||||| ||||||||||||||
seq2  GATGCGTTGG--TTACTCT--CAGC-TATCATCATGGAGATGAGTGTGGC  1039

seq1  TGCTGCTACGGCTGCTATCTTTGCTTGTAAAACTTTCTCTCAGCATTTAT  1099
      ||||||||||||||||||| |||| ||||||   ||||||||||| ||||
seq2  TGCTGCTACGGCTGCTATC-TTGC-TGTAAA--CTTCTCTCAGCA-TTAT  1084

seq1  ATGTGTAACTCCCCTGTCTCATTTATTATTGTCCTCTTAGGGAAGCTTGC  1149
      |||||| ||||||||||| || ||||||| |  ||||||||  ||| |||
seq2  ATGTGT-ACTCCCCTGTC-CA-TTATTATGG--CTCTTAGG--AGCCTGC  1127

seq1  TTAGAATTCTAGTTCTAAAACTGCAA  1175
      |||||||   ||||||  ||||||||
seq2  TTAGAAT--CAGTTCT--AACTGCAA  1149

seq1: chr3_127391165_127391227
seq2: B6Ng01-061E08.g_830_892 (reverse)

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTT  50

seq1  CTTTCTTTCTTTC  63
      |||||||||||||
seq2  CTTTCTTTCTTTC  63