BAC Information

Click to search

BAC

Clone NameB6Ng01-062G12
Chromosome13 (Build37)
Map Location 106,032,816 - 106,163,383
singlet/doubletdoublet
Overlap geneRnf180
Upstream geneCenpk, Adamts6, LOC667518, Sdccag10, 3110031B13Rik, A930021C24Rik, EG238836, Rgs7bp, 4933425L06Rik, LOC100040646, LOC100040656
Downstream geneHtr1a, EG668025, Olfr717-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062G12.bB6Ng01-062G12.g
ACCDH882814DH882815
length956589
definitionDH882814|Mus musculus domesticus DNA, BAC clone: B6Ng01-062G12, 5' end.DH882815|Mus musculus domesticus DNA, BAC clone: B6Ng01-062G12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,162,736 - 106,163,383)(106,032,816 - 106,033,404)
sequence
gaattcttttctgttggggactgttataatgtggatgggcacaatgtgta
tgtattctttctgatatggattcatttgtgaaaagggtgaagagccatcc
acattgcatatggcctatgtcagaatgttaacatatgctctgtatgatat
aaatacataagttctgtgaatatactattttttcctattgacgggcacct
gtgctgtgctgcttctagtttgaagtatcataaatgaagctgatgtcaac
actgttacacaagtcctttgatgcacatctgatttaacagatcaggaata
agatcaggagccttgacctaagattagattgtcgttacatgtggaatttt
ttaatcttcgtttccccaaacggtatcttttctatcttttaacatttcca
ccactggaaatgtttgttatcccatatccttggcaataattcttttggtc
agccatttaaaattattcagtctaaaacctttacagtggtgttatatttt
aatttttatttccattataaatagtgatattgtccaaaaaaataaaataa
aataaaataaaataaaagacaggggttggggatttagctcagttgtagag
tgagcagttgcctagcaagtgcaagaccctgggttcagtcctcaattccg
gaaaaaaaaaaaagagacaaaataaatagtgatattgaattatttctttt
acttttgagattataatataattacatcatttccacatttccctttttcc
ttaaaactctcctatatacaggtccttgctctctttcttgtcattgttat
gtgcatatgtgtgtacgtatatattaatttctttactgattgtactttaa
catccttgcactgtggaaaaatgttgttaaaatcctcttcctaacaacta
aagaaagtgttgatcaagtgcagagggagcccaaagaacaagagagactt
ttagct
gaattctatgatattatttgtatgtacagtttcagaactgaccatgcact
gaacaaagaattggtaagtccccagggaagatcacctcccccacctctcc
cacacccagcttcacttggctgcctgtacttctgggtatggttgggacct
caagggctttctccatccagtttggcatgcccattggtgtcatatttgtt
caactcatatttggacggtcatgtttggggaaaaaaaagctatttttaag
accagagtctagatatgtaacaccaactagcctctagcctggtgctttct
atgtagaccaggctggcctcaaacatggacaatcctcctgcctcagcttc
ctgacagttaggattattagagtgagtcgacagacctagttaaaaagcct
cactcctaagagtagttaggtgacataaactggactccagtggtctgaaa
ggctaaaagagaaaccttcaagttggatgggtaaggaggtgaatgtgggt
gggggtctaggaggagctgaggaggtaaatactatcaaaacaagctatat
gcattctcaaagaattaacaaagtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_106162736_106163383
seq2: B6Ng01-062G12.b_48_695 (reverse)

seq1  GAATTGAGGACTGAACCCAGGGTCTTGCACTTGCTAGGCAACTGCTCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGAGGACTGAACCCAGGGTCTTGCACTTGCTAGGCAACTGCTCACT  50

seq1  CTACAACTGAGCTAAATCCCCAACCCCTGTCTTTTATTTTATTTTATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAACTGAGCTAAATCCCCAACCCCTGTCTTTTATTTTATTTTATTTT  100

seq1  ATTTTATTTTTTTGGACAATATCACTATTTATAATGGAAATAAAAATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTTTTTGGACAATATCACTATTTATAATGGAAATAAAAATTAA  150

seq1  AATATAACACCACTGTAAAGGTTTTAGACTGAATAATTTTAAATGGCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAACACCACTGTAAAGGTTTTAGACTGAATAATTTTAAATGGCTGA  200

seq1  CCAAAAGAATTATTGCCAAGGATATGGGATAACAAACATTTCCAGTGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGAATTATTGCCAAGGATATGGGATAACAAACATTTCCAGTGGTG  250

seq1  GAAATGTTAAAAGATAGAAAAGATACCGTTTGGGGAAACGAAGATTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTTAAAAGATAGAAAAGATACCGTTTGGGGAAACGAAGATTAAAA  300

seq1  AATTCCACATGTAACGACAATCTAATCTTAGGTCAAGGCTCCTGATCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCACATGTAACGACAATCTAATCTTAGGTCAAGGCTCCTGATCTTA  350

seq1  TTCCTGATCTGTTAAATCAGATGTGCATCAAAGGACTTGTGTAACAGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGATCTGTTAAATCAGATGTGCATCAAAGGACTTGTGTAACAGTGT  400

seq1  TGACATCAGCTTCATTTATGATACTTCAAACTAGAAGCAGCACAGCACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCAGCTTCATTTATGATACTTCAAACTAGAAGCAGCACAGCACAG  450

seq1  GTGCCCGTCAATAGGAAAAAATAGTATATTCACAGAACTTATGTATTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCGTCAATAGGAAAAAATAGTATATTCACAGAACTTATGTATTTAT  500

seq1  ATCATACAGAGCATATGTTAACATTCTGACATAGGCCATATGCAATGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATACAGAGCATATGTTAACATTCTGACATAGGCCATATGCAATGTGG  550

seq1  ATGGCTCTTCACCCTTTTCACAAATGAATCCATATCAGAAAGAATACATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCTTCACCCTTTTCACAAATGAATCCATATCAGAAAGAATACATA  600

seq1  CACATTGTGCCCATCCACATTATAACAGTCCCCAACAGAAAAGAATTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGTGCCCATCCACATTATAACAGTCCCCAACAGAAAAGAATTC  648

seq1: chr13_106032816_106033404
seq2: B6Ng01-062G12.g_68_656

seq1  GAATTCTATGATATTATTTGTATGTACAGTTTCAGAACTGACCATGCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGATATTATTTGTATGTACAGTTTCAGAACTGACCATGCACT  50

seq1  GAACAAAGAATTGGTAAGTCCCCAGGGAAGATCACCTCCCCCACCTCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAGAATTGGTAAGTCCCCAGGGAAGATCACCTCCCCCACCTCTCC  100

seq1  CACACCCAGCTTCACTTGGCTGCCTGTACTTCTGGGTATGGTTGGGACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCAGCTTCACTTGGCTGCCTGTACTTCTGGGTATGGTTGGGACCT  150

seq1  CAAGGGCTTTCTCCATCCAGTTTGGCATGCCCATTGGTGTCATATTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGCTTTCTCCATCCAGTTTGGCATGCCCATTGGTGTCATATTTGTT  200

seq1  CAACTCATATTTGGACGGTCATGTTTGGGGAAAAAAAAGCTATTTTTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCATATTTGGACGGTCATGTTTGGGGAAAAAAAAGCTATTTTTAAG  250

seq1  ACCAGAGTCTAGATATGTAACACCAACTAGCCTCTAGCCTGGTGCTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGTCTAGATATGTAACACCAACTAGCCTCTAGCCTGGTGCTTTCT  300

seq1  ATGTAGACCAGGCTGGCCTCAAACATGGACAATCCTCCTGCCTCAGCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGACCAGGCTGGCCTCAAACATGGACAATCCTCCTGCCTCAGCTTC  350

seq1  CTGACAGTTAGGATTATTAGAGTGAGTCGACAGACCTAGTTAAAAAGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGTTAGGATTATTAGAGTGAGTCGACAGACCTAGTTAAAAAGCCT  400

seq1  CACTCCTAAGAGTAGTTAGGTGACATAAACTGGACTCCAGTGGTCTGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTAAGAGTAGTTAGGTGACATAAACTGGACTCCAGTGGTCTGAAA  450

seq1  GGCTAAAAGAGAAACCTTCAAGTTGGATGGGTAAGGAGGTGAATGTGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAAAGAGAAACCTTCAAGTTGGATGGGTAAGGAGGTGAATGTGGGT  500

seq1  GGGGGTCTAGGAGGAGCTGAGGAGGTAAATACTATCAAAACAAGCTATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTCTAGGAGGAGCTGAGGAGGTAAATACTATCAAAACAAGCTATAT  550

seq1  GCATTCTCAAAGAATTAACAAAGTGTGTGTGTGTGTGTG  589
      |||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTCAAAGAATTAACAAAGTGTGTGTGTGTGTGTG  589