BAC Information

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BAC

Clone NameB6Ng01-062I07
Chromosome13 (Build37)
Map Location 41,712,877 - 41,875,291
singlet/doubletdoublet
Overlap geneEG621976, EG328231, 9530008L14Rik
Upstream geneLOC100039048, Tcfap2a, EG621629, EG637157, LOC100039105, Gcnt2, Pak1ip1, Tmem14c, Mak, EG621771, Gcm2, LOC637277, Elovl2, LOC268650, BC024659, Nedd9
Downstream geneLOC100039272, Hivep1, Edn1, Hn1-ps4, Phactr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062I07.bB6Ng01-062I07.g
ACCDH882889DH882890
length1,0791,149
definitionDH882889|Mus musculus domesticus DNA, BAC clone: B6Ng01-062I07, 5' end.DH882890|Mus musculus domesticus DNA, BAC clone: B6Ng01-062I07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,712,877 - 41,713,961)(41,874,137 - 41,875,291)
sequence
gaattcactaaaggtatttggcttggtggcccttcttatctgtgttacaa
ctattctgtctaccatagtagtatgatagcatccatggatggtctgagca
tactagctggtattcatgtagaatttgttatgaaattttgctttttatat
atttaaaaatcttctttaactgtacaatcatttttagccagagattgttc
agaaacaatgcagagcagacatgactcctaggctgtatgtatttattggc
ccaaatctagggggccttaccaaattatgaatgtaatgtatcccataact
caatcaatacaggatcagaagtttctgctgttagcaatgtagtgggagca
aattctgtatatttcggttctctggaatgaaaaaaaaaaaaaaaccaact
ctacagtcacgtttttttatcacattatttaaaaatattacatggactat
ttacatacagtagaaaattacaaacagttcccaaacatagtcttttatgt
gtgtttttcagcttgggggatagaatatgttgaatagtgggtttttacct
gtttgctggtaactttatttcaaaggggtgtgtgtgtgtgtgtgtccgtg
tccacatgtgtgtgtccgtgtccacatgtgtgtgtgttgagggaatgcat
acctgcccgtgcataggagccgtaagatgacatcaggtgcattcctctat
cactgtgtctctgagggcagagtttcttcctgaactgggggcttgtattt
cctcagctattctggaagtcagtaagtaagacatgggcatcttcctgcct
ctacccttctctgacctcaggttttaggcctgggccacatacccggcttg
tcgtgtgcggcatctgaacgcaagttctcatgcttgcatagcaagcactc
ttagccagctcagccatcttctccagtcctgtgttctcttcccttgtttg
tttctttgtgtttttgatacaggggattctccgtgtacagcctggttttt
ctgcttgctatgtagaccagcctgctttgactcgcaagatcttctgccct
ctgccttccgagtgctgggatttagggct
gaattctgttcccaatgatcattagtgcggacaacagggagcttctggtt
gtgggcgaggttaataaaatctgtcagctcaatggccagcataatgaacc
tgttaatgactcttaatagaagctggatccctccaactactgcagaggaa
aggctggaagagaggcaggtgtctgtgcagagcagacagatgccttagtt
ccttctagatatagacgatatttagatcagtcactgtttgatcaggaatc
agactctgctgtgtttgggggtgttggtacctgggggtcgggagcggaaa
gggtagggagtccccagaataacccacaatggctcggcccccattctcaa
aaatgaatgctatagctgctcacaaagcacaggctagggacatccataga
ctcagagctatggatatcttaaacatctactccaccctgagtttccatat
aagaaagatagaattcacaataataatagcgacagccatggtaggtggtc
accagatgctgtcaaggactcatgtattgtccccatttgacaacaagaaa
gcccaagtggagagggcttcagctactttagcaaggtggtatttagaagc
ttatgcccagaagcatcaggcttcttcactggaaaaacacacaaaagcag
caaactataaagtcagacccatctatcttgccagtcagtacattcaggtc
caggttcaggaaaagtacataaaagctatgttacctgccatgccttgtta
ctacaacagaggatcccaggcctttaggatgcttggctgttcagtgttat
ccacatgtgaccctggctgtgacattccagccaatgatgctcctacccca
tctttgtcattttctccgtattgacctagtcccacttgtcacaaacttgt
cacaaaacttgtcacaatttgtgtcccctgaagctcatcttgatctccca
atgaggccatagtacaacggacaaaagaagctgccaactctaatgacttc
ttctgagcccaagccttttgggactgaacaacaggagtgcccgaagccag
aaacctagtgcaagccccacaggctaggcgggagccacagacgctctcaa
accctaagtctctgttgattcaggtggtgtacggtcttggggctcgaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_41712877_41713961
seq2: B6Ng01-062I07.b_43_1121

seq1  GAATTCACTAAAGGTATTTGGCTTGGTGGCCCTTCTTATCTGTGTTACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAAAGGTATTTGGCTTGGTGGCCCTTCTTATCTGTGTTACAA  50

seq1  CTATTCTGTCTACCATAGTAGTATGATAGCATCCATGGATGGTCTGAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTGTCTACCATAGTAGTATGATAGCATCCATGGATGGTCTGAGCA  100

seq1  TACTAGCTGGTATTCATGTAGAATTTGTTATGAAATTTTGCTTTTTATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGCTGGTATTCATGTAGAATTTGTTATGAAATTTTGCTTTTTATAT  150

seq1  ATTTAAAAATCTTCTTTAACTGTACAATCATTTTTAGCCAGAGATTGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAATCTTCTTTAACTGTACAATCATTTTTAGCCAGAGATTGTTC  200

seq1  AGAAACAATGCAGAGCAGACATGACTCCTAGGCTGTATGTATTTATTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAATGCAGAGCAGACATGACTCCTAGGCTGTATGTATTTATTGGC  250

seq1  CCAAATCTAGGGGGCCTTACCAAATTATGAATGTAATGTATCCCATAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCTAGGGGGCCTTACCAAATTATGAATGTAATGTATCCCATAACT  300

seq1  CAATCAATACAGGATCAGAAGTTTCTGCTGTTAGCAATGTAGTGGGAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAATACAGGATCAGAAGTTTCTGCTGTTAGCAATGTAGTGGGAGCA  350

seq1  AATTCTGTATATTTCGGTTCTCTGGAATGAAAAAAAAAAAAAAACCAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGTATATTTCGGTTCTCTGGAATGAAAAAAAAAAAAAAACCAACT  400

seq1  CTACAGTCACGTTTTTTTATCACATTATTTAAAAATATTACATGGACTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTCACGTTTTTTTATCACATTATTTAAAAATATTACATGGACTAT  450

seq1  TTACATACAGTAGAAAATTACAAACAGTTCCCAAACATAGTCTTTTATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATACAGTAGAAAATTACAAACAGTTCCCAAACATAGTCTTTTATGT  500

seq1  GTGTTTTTCAGCTTGGGGGATAGAATATGTTGAATAGTGGGTTTTTACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTTCAGCTTGGGGGATAGAATATGTTGAATAGTGGGTTTTTACCT  550

seq1  GTTTGCTGGTAACTTTATTTCAAAGGGGTGTGTGTGTGTGTGTGTCCGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTGGTAACTTTATTTCAAAGGGGTGTGTGTGTGTGTGTGTCCGTG  600

seq1  TCCACATGTGTGTGTCCGTGTCCACATGTGTGTGTGTTGAGGGAATGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATGTGTGTGTCCGTGTCCACATGTGTGTGTGTTGAGGGAATGCAT  650

seq1  ACCTGCCCGTGCATAGGAGCCGTAAGATGACATCAGGTGCATTCCTCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCCGTGCATAGGAGCCGTAAGATGACATCAGGTGCATTCCTCTAT  700

seq1  CACTGTGTCTCTGAGGGCAGAGTTTCTTCCTGAACTGGGGGCTTGTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGTCTCTGAGGGCAGAGTTTCTTCCTGAACTGGGGGCTTGTATTT  750

seq1  CCTCAGCTATTCTGGAAGTCAGTAAGTAAGACATGGGCATCTTCCTGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCTATTCTGGAAGTCAGTAAGTAAGACATGGGCATCTTCCTGCCT  800

seq1  CTACCCTTCTCTGACCTCAGGTTTTAGGCCTGGGCCACATACCCGGCTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTTCTCTGACCTCAGGTTTTAGGCCTGGGCCACATACCCGGCTTG  850

seq1  TCGTGTGCGGCATCTGAACGCAAGTCCTCATGCTTGCATAGCAAGCACTC  900
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCGTGTGCGGCATCTGAACGCAAGTTCTCATGCTTGCATAGCAAGCACTC  900

seq1  TTAGCCAGCTCAGCCATC-TCTCCAGTCCTGTTGTTCTCTTCCCTTGTTT  949
      |||||||||||||||||| |||||||||||| ||||||||||||||||||
seq2  TTAGCCAGCTCAGCCATCTTCTCCAGTCCTG-TGTTCTCTTCCCTTGTTT  949

seq1  GTTTCTTTGTTGTTTTTTGATACA-GGGATTCTCCGTGTAACAGCCTGGT  998
      ||||||||||   ||||||||||| |||||||||||||| ||||||||||
seq2  GTTTCTTTGT--GTTTTTGATACAGGGGATTCTCCGTGT-ACAGCCTGGT  996

seq1  TTTTCTGGCTTGCTATGTAGACCAGGCTGGCTTTGAACTCGCAAAGATCC  1048
      |||||| |||||||||||||||||| || |||||| |||||| |||||| 
seq2  TTTTCT-GCTTGCTATGTAGACCAGCCT-GCTTTG-ACTCGC-AAGATCT  1042

seq1  TCCTGCCTCTGCCTTCCGAGTGCTGGGATTTAAGGCT  1085
      ||   ||||||||||||||||||||||||||| ||||
seq2  TCTGCCCTCTGCCTTCCGAGTGCTGGGATTTAGGGCT  1079

seq1: chr13_41874137_41875291
seq2: B6Ng01-062I07.g_69_1217 (reverse)

seq1  ATTCTGAGCCCCAATGACCGT-CACCACCTGAATC-ACAGAGACCTTAGG  48
      |||| ||||||||| |||||| ||||||||||||| ||||||| ||||||
seq2  ATTC-GAGCCCCAA-GACCGTACACCACCTGAATCAACAGAGA-CTTAGG  47

seq1  GTTTGAGAGCGTCTGTGTGCTCCGGCCTAGCCTGTGGGGCTGGCACTTAG  98
      ||||||||||||||||| ||||| ||||||||||||||||| |||| |||
seq2  GTTTGAGAGCGTCTGTG-GCTCCCGCCTAGCCTGTGGGGCTTGCAC-TAG  95

seq1  GTCTCTGGCTTCGGGCACTCCTTGTTG-TCAGTCCCAAAAGGCTTGGGCT  147
      || |||||||||||||||||| ||||| ||||||||||||||||||||||
seq2  GTTTCTGGCTTCGGGCACTCC-TGTTGTTCAGTCCCAAAAGGCTTGGGCT  144

seq1  CAAGAGGAGTCATTAAGAGTTGGCAGCTTCTTTTGTCCCTTGTACCTATG  197
      ||  || ||||||| ||||||||||||||||||||||| ||||| |||||
seq2  CAGAAGAAGTCATT-AGAGTTGGCAGCTTCTTTTGTCCGTTGTA-CTATG  192

seq1  GCCTCATTGGGAGATCAAGATGAGCTTCAGGGGACACAAATTGTGACAAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATTGGGAGATCAAGATGAGCTTCAGGGGACACAAATTGTGACAAG  242

seq1  TTTTGTGACAAGTTTTGTGACAAGTGGGACTAGGTCAATACGGAGAAAAT  297
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGACAAG-TTTGTGACAAGTGGGACTAGGTCAATACGGAGAAAAT  291

seq1  GACAAAGATGGGGTAGGAGCATCATTGGCTGGAATGTCACAGCCAGGGTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGATGGGGTAGGAGCATCATTGGCTGGAATGTCACAGCCAGGGTC  341

seq1  ACATGTGGATAACACTGAACAGCCAAGCATCCTAAAGGCCTGGGATCCTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGGATAACACTGAACAGCCAAGCATCCTAAAGGCCTGGGATCCTC  391

seq1  TGTTGTAGTAACAAGGCATGGCAGGTAACATAGCTTTTATGTACTTTTCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTAGTAACAAGGCATGGCAGGTAACATAGCTTTTATGTACTTTTCC  441

seq1  TGAACCTGGACCTGAATGTACTGACTGGCAAGATAGATGGGTCTGACTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTGGACCTGAATGTACTGACTGGCAAGATAGATGGGTCTGACTTT  491

seq1  ATAGTTTGCTGCTTTTGTGTGTTTTTCCAGTGAAGAAGCCTGATGCTTCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTGCTGCTTTTGTGTGTTTTTCCAGTGAAGAAGCCTGATGCTTCT  541

seq1  GGGCATAAGCTTCTAAATACCACCTTGCTAAAGTAGCTGAAGCCCTCTCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATAAGCTTCTAAATACCACCTTGCTAAAGTAGCTGAAGCCCTCTCC  591

seq1  ACTTGGGCTTTCTTGTTGTCAAATGGGGACAATACATGAGTCCTTGACAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGCTTTCTTGTTGTCAAATGGGGACAATACATGAGTCCTTGACAG  641

seq1  CATCTGGTGACCACCTACCATGGCTGTCGCTATTATTATTGTGAATTCTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGTGACCACCTACCATGGCTGTCGCTATTATTATTGTGAATTCTA  691

seq1  TCTTTCTTATATGGAAACTCAGGGTGGAGTAGATGTTTAAGATATCCATA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTATATGGAAACTCAGGGTGGAGTAGATGTTTAAGATATCCATA  741

seq1  GCTCTGAGTCTATGGATGTCCCTAGCCTGTGCTTTGTGAGCAGCTATAGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGAGTCTATGGATGTCCCTAGCCTGTGCTTTGTGAGCAGCTATAGC  791

seq1  ATTCATTTTTGAGAATGGGGGCCGAGCCATTGTGGGTTATTCTGGGGACT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTTTGAGAATGGGGGCCGAGCCATTGTGGGTTATTCTGGGGACT  841

seq1  CCCTACCCTTTCCGCTCCCGACCCCCAGGTACCAACACCCCCAAACACAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACCCTTTCCGCTCCCGACCCCCAGGTACCAACACCCCCAAACACAG  891

seq1  CAGAGTCTGATTCCTGATCAAACAGTGACTGATCTAAATATCGTCTATAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCTGATTCCTGATCAAACAGTGACTGATCTAAATATCGTCTATAT  941

seq1  CTAGAAGGAACTAAGGCATCTGTCTGCTCTGCACAGACACCTGCCTCTCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGGAACTAAGGCATCTGTCTGCTCTGCACAGACACCTGCCTCTCT  991

seq1  TCCAGCCTTTCCTCTGCAGTAGTTGGAGGGATCCAGCTTCTATTAAGAGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCTTTCCTCTGCAGTAGTTGGAGGGATCCAGCTTCTATTAAGAGT  1041

seq1  CATTAACAGGTTCATTATGCTGGCCATTGAGCTGACAGATTTTATTAACC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACAGGTTCATTATGCTGGCCATTGAGCTGACAGATTTTATTAACC  1091

seq1  TCGCCCACAACCAGAAGCTCCCTGTTGTCCGCACTAATGATCATTGGGAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCCACAACCAGAAGCTCCCTGTTGTCCGCACTAATGATCATTGGGAA  1141

seq1  CAGAATTC  1155
      ||||||||
seq2  CAGAATTC  1149