BAC Information

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BAC

Clone NameB6Ng01-062M15
Chromosome12 (Build37)13 (Build37)
Map Location 32,631,616 - 32,631,843104,743,949 - 104,745,140
singlet/doubletsingletsinglet
Overlap geneHbp1
Upstream geneSh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22
Downstream genePrkar2b, Pik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062M15.bB6Ng01-062M15.g
ACCDH883078DH883079
length6851,162
definitionDH883078|Mus musculus domesticus DNA, BAC clone: B6Ng01-062M15, 5' end.DH883079|Mus musculus domesticus DNA, BAC clone: B6Ng01-062M15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,631,616 - 32,631,843)(104,743,949 - 104,745,140)
sequence
gaattcatgaaattcttaggcaaatagatgtatctggaggatatcatcct
gaatgaggtaacccaatcacaaaacaagtcacttgatatgcactcactga
taagtggttattagcccagaaacctagaatacccaagatacaatttgcaa
aacacaagaaaatcaagaagaagaaagaccaacgcgtggatacttcactc
ctccctagaataggggataaaatacccatggaaggagttacagagacaaa
gtttgaagctaagacgaaaggatggaccattcagagactaccccacccgg
gggtccaccccataatcagccaccaaacgcagacactattgcatatgcca
gcaagattttgctgaaaggaccctgatatagctgtctcttgtgagactat
gccagtgcctggcaaatacagaagtggatgttcacagtcatctataggct
agaacacagggcccccaaaggaggagctagagaaagtacccaaggagctg
aaggggtctgcaaccctataggtggaacaacaatatgaactaaccagtac
ccccagagctcatatctctagctgcatatgtagcagaagatggcctagtt
ggccatcattgggaagagaggtcccttcgtcttacaaactttatatgtcc
cagtacaggggaacaccagggccaagaagtgggag
gaattcaataagataatgttcacaagccaagctctagtagcatgttttca
taaactatccttttctatcattcctgtcagttcagtccccatttgtaaag
tatgacaatcttatttttcaacacacaattaaacactgttcctttctccc
gaatgtaattgatttcagcgttcactcattccagagcctgtgctaacttc
tggagctacaatcattagtttgtggcaatgtcactgtttgcataaagttg
aggatcttgaataggaaccgggtagcaaaacactgcacagtgaagcaggg
gacaatgggaagaagcgccaccgtgtgcgcggtggcacagggcatggtct
cttgacctgggctgagagctttggtgaggctccggaagatgccataccag
agacaacagaatagatgagacttagctaggtgatgccggggctacaaact
gttccagaaaggtcataatgagtcccaagaaaggaaatgctggagtagag
aatgggagagcacccagagatgacgatgagtggccagaagctacagaaag
actctgtaagccatataaagaagtcttcccttctccctgaagacatgcaa
aggcctgattggccatgacgtgaccacattgctggcccaactgtggagga
gatcctcttgggaaaaaatgaggaggggtgggtaagatcgtgttcttgga
caaggctgtgcttgtggtcagcagaacaagggtgctggctttcatctgtc
atcctcatgggaaacccaggcaggaaagtgtaagtttgaagtccacctta
actacatagtgagaccctgtctcacaaagaaaaaagaaaaaaaaaagcat
atatctttcccctggatgttgataaagtcaagggtaaaatgatatcattt
taattaagcaattatttagcagacacatggtatgaagtttccaccaaaag
gtagtaccaaaagtagacatggacattctgcctcccactagatgcctact
ctttagcttctttctaggcaattatacagcatagtcctgacatgaagtac
gtcccatgatgaattttgtctgaatgcatggaagctgtgagctgcttctc
tcagctttagcaataaaaccagggcccagaccaatgagcgaatgtagctc
ctgtccaagaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_32631616_32631843
seq2: B6Ng01-062M15.b_461_734 (reverse)

seq1  CTCCCACTTCTTGGCCCTG-------------------------------  19
      |||||||||||||||||||                               
seq2  CTCCCACTTCTTGGCCCTGGTGTTCCCCTGTACTGGGACATATAAAGTTT  50

seq1  GCAAGACCCATGGGCCTCTCTTTCCACTGA----------------CTTC  53
      | |||||  | || |||||||| ||| |||                ||||
seq2  GTAAGACGAAGGGACCTCTCTTCCCAATGATGGCCAACTAGGCCATCTTC  100

seq1  TGATACATACGCAGCTAGAGACACGAGCTCCGGGGGTACTGGTCAGTTCA  103
      || |||||| ||||||||||| | |||||| |||||||||||| ||||||
seq2  TGCTACATATGCAGCTAGAGATATGAGCTCTGGGGGTACTGGTTAGTTCA  150

seq1  TAATGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTAC  153
      || |||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TATTGTTGTTCCACCTATAGGGTTGCAGACCCCTTCAGCTCCTTGGGTAC  200

seq1  TTTCTCTAACTCCTCCATTGGGGACCCTGTGATCCTATCCAATAGCTGAC  203
      |||||||| ||||||| |||||| ||||||| | ||| || |||| ||||
seq2  TTTCTCTAGCTCCTCCTTTGGGGGCCCTGTG-TTCTAGCCTATAGATGAC  249

seq1  TGTGAGCATCCACTTCTGTGTTTGC  228
      ||||| ||||||||||||| |||||
seq2  TGTGAACATCCACTTCTGTATTTGC  274

seq1: chr13_104743949_104745140
seq2: B6Ng01-062M15.g_69_1230 (reverse)

seq1  CTTCTTGGACAGAAAGCTAACCATTCAGCTCATTGTGTCTGTGCCCCTGT  50
      ||||||||||||  |||||  ||||| |||||||| ||||| | ||||| 
seq2  CTTCTTGGACAG-GAGCTA--CATTC-GCTCATTG-GTCTG-GGCCCTG-  43

seq1  GTTTTACTGCCATAAGGACTGAGAGAAGGCAGCTTCACAGCTGCCCATGA  100
      |||||| |||  ||| | ||||||||| ||||| ||||||||  ||||| 
seq2  GTTTTATTGC--TAAAG-CTGAGAGAA-GCAGC-TCACAGCT-TCCATG-  86

seq1  CATATCAAGACAACATTCATCAATGGGGACGTACTTCATGTCAGGGACCT  150
      ||| || |||||| ||||||||   ||||||||||||||||||||   ||
seq2  CAT-TC-AGACAAAATTCATCA--TGGGACGTACTTCATGTCAGG--ACT  130

seq1  ATGGCTGGTAATAATTGCCTAGAAAGGAAGCTTAAAGAGGTAGGCACTCT  200
      || ||||   ||||||||||||||| ||||| |||||| ||||||| |||
seq2  AT-GCTG--TATAATTGCCTAGAAA-GAAGC-TAAAGA-GTAGGCA-TCT  173

seq1  AGTGGGAGGCAGAATGTCCATGTCCTACCTTTTGGTACTACCTTTTGGTG  250
      ||||||||||||||||||||||| ||| ||||||||||||||||||||||
seq2  AGTGGGAGGCAGAATGTCCATGT-CTA-CTTTTGGTACTACCTTTTGGTG  221

seq1  GAAACTTCATACCATGTGTCTTGCTAAATAATTGCTTAATTAAAATGATA  300
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAAACTTCATACCATGTGTC-TGCTAAATAATTGCTTAATTAAAATGATA  270

seq1  TCATTTTACCCTTGACTTTATCAACATCCAGGGGAAAGATATATGCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTACCCTTGACTTTATCAACATCCAGGGGAAAGATATATGCTTTT  320

seq1  TTTTTTCTTTTTTCTTTGTGAGACAGGGTCTCACTATGTAGTTAAGGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTTTTTCTTTGTGAGACAGGGTCTCACTATGTAGTTAAGGTGG  370

seq1  ACTTCAAACTTACACTTTCCTGCCTGGGTTTCCCATGAGGATGACAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAACTTACACTTTCCTGCCTGGGTTTCCCATGAGGATGACAGATG  420

seq1  AAAGCCAGCACCCTTGTTCTGCTGACCACAAGCACAGCCTTGTCCAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAGCACCCTTGTTCTGCTGACCACAAGCACAGCCTTGTCCAAGAA  470

seq1  CACGATCTTACCCACCCCTCCTCATTTTTTCCCAAGAGGATCTCCTCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGATCTTACCCACCCCTCCTCATTTTTTCCCAAGAGGATCTCCTCCAC  520

seq1  AGTTGGGCCAGCAATGTGGTCACGTCATGGCCAATCAGGCCTTTGCATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGCCAGCAATGTGGTCACGTCATGGCCAATCAGGCCTTTGCATGT  570

seq1  CTTCAGGGAGAAGGGAAGACTTCTTTATATGGCTTACAGAGTCTTTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGGAGAAGGGAAGACTTCTTTATATGGCTTACAGAGTCTTTCTGT  620

seq1  AGCTTCTGGCCACTCATCGTCATCTCTGGGTGCTCTCCCATTCTCTACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTGGCCACTCATCGTCATCTCTGGGTGCTCTCCCATTCTCTACTC  670

seq1  CAGCATTTCCTTTCTTGGGACTCATTATGACCTTTCTGGAACAGTTTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTTCCTTTCTTGGGACTCATTATGACCTTTCTGGAACAGTTTGTA  720

seq1  GCCCCGGCATCACCTAGCTAAGTCTCATCTATTCTGTTGTCTCTGGTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCGGCATCACCTAGCTAAGTCTCATCTATTCTGTTGTCTCTGGTATG  770

seq1  GCATCTTCCGGAGCCTCACCAAAGCTCTCAGCCCAGGTCAAGAGACCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTCCGGAGCCTCACCAAAGCTCTCAGCCCAGGTCAAGAGACCATG  820

seq1  CCCTGTGCCACCGCGCACACGGTGGCGCTTCTTCCCATTGTCCCCTGCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGCCACCGCGCACACGGTGGCGCTTCTTCCCATTGTCCCCTGCTT  870

seq1  CACTGTGCAGTGTTTTGCTACCCGGTTCCTATTCAAGATCCTCAACTTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGCAGTGTTTTGCTACCCGGTTCCTATTCAAGATCCTCAACTTTA  920

seq1  TGCAAACAGTGACATTGCCACAAACTAATGATTGTAGCTCCAGAAGTTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACAGTGACATTGCCACAAACTAATGATTGTAGCTCCAGAAGTTAG  970

seq1  CACAGGCTCTGGAATGAGTGAACGCTGAAATCAATTACATTCGGGAGAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCTCTGGAATGAGTGAACGCTGAAATCAATTACATTCGGGAGAAA  1020

seq1  GGAACAGTGTTTAATTGTGTGTTGAAAAATAAGATTGTCATACTTTACAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGTGTTTAATTGTGTGTTGAAAAATAAGATTGTCATACTTTACAA  1070

seq1  ATGGGGACTGAACTGACAGGAATGATAGAAAAGGATAGTTTATGAAAACA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGACTGAACTGACAGGAATGATAGAAAAGGATAGTTTATGAAAACA  1120

seq1  TGCTACTAGAGCTTGGCTTGTGAACATTATCTTATTGAATTC  1192
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTAGAGCTTGGCTTGTGAACATTATCTTATTGAATTC  1162