BAC Information

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BAC

Clone NameB6Ng01-063A01
Chromosome13 (Build37)
Map Location 37,844,963 - 37,939,124
singlet/doubletdoublet
Overlap geneRreb1
Upstream geneF13a1, Ly86, LOC100042794, LOC100042800, LOC100042802, LOC100041624
Downstream geneSsr1, Cage1, Riok1, Dsp, 6530403A03Rik, Bmp6, Txndc5, Muted, Eef1e1, LOC621102
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063A01.bB6Ng01-063A01.g
ACCDH883229DH883230
length1,1271,066
definitionDH883229|Mus musculus domesticus DNA, BAC clone: B6Ng01-063A01, 5' end.DH883230|Mus musculus domesticus DNA, BAC clone: B6Ng01-063A01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,937,954 - 37,939,124)(37,844,963 - 37,846,046)
sequence
gaattcagtcgcctgctacctggccgcaccttccttacacctctcaaagg
tggctcgcctgaatcggcagctatggagccagagattgtgactcagcttt
tcaccgagacttccttgtgtgtgcatcagtgcagtggctcggggcaatta
gcatcctaagtacttagcttagtgcatcctgtaccaggtgccctgggatg
tgttctctgctttggatcatggtggtcaccaaagcaccaatgctcaaacc
tccttctcccttgtaaggatgctgccaagaccctgggaggacagactgtc
actactctgctcaaatcttagggtccctatgtccagaagatggaaaggtc
aacttctgccccacctgacccgggctctaagtaacccgtcaatcctgtta
tctcctggtacatcgtcttcaacagcaaattataccctggacttccaaac
cggcctgtcctctcctgctgggacctcggcccctgcttgtactttttcct
ggaagtgcagacccagtgcggtgagcctctctgaaccctggccttcccat
gggaacttggcttgggggaccattaggcattgtgggttcctttcacaaca
taaactcccccgaggcaaaagccaccgtgcttcacctgccaaaacctaaa
cccaattccctcaacactacagctgctcaattaaggccatttaccgactg
aaggtggaggcaatcaaatcgcatgcaacactctcacgaggtacttgtca
aggcacaagaatggagtttaaggaatagaaagcttcaggtacccaggtgt
gaagatcatccacagcaaaaatgaccaaatgcgcggggcgggggtgtagt
tcatcaaaagatcgcacgattagcatctgtgagactccgagttccatacc
cagaatcaaatacaataaaaaaaagataaaaaagaaagaaaaggtagaga
aaataaacaacacacacaaagattatcctatgctatgaaatgagcattga
gcttcttgaaactacattagctgtaaatgctagctaacaaacgtctcaag
cctctgttctcttcagaagaaagggggcaggagtcagcagtagagcttaa
cagtcttagtcacctagtgggcagcct
gaattcaaaggccagtctggtctttataagcaagatcctgattcaaaaca
aaatgaaacaaaaccaaccagagtccggtctgatgatgtgtcccttcaat
cagcattcaagaggcagacacaggagggtatggggggacttttgggatag
cattggaaatgtaaatgaggaaaatacctaataaaaaaatattaaaaaaa
aaaaaaaaaaagaagcagacaaaggtggctctctacactgactgttggtc
tggtttatagagtgagctccagtacagcaaggctacggtgcgaccaccta
actcaaataccagccaccatgagagaccttttcccttcttcaactgtgag
ccaaaataaaacctgggctcctgttctgcaacctcctacaaagtgatctg
acaggtagtcagaactgtgccagaaccatatctcctaaaatctctttcta
ggagatatggtgtgtggtccaacctctgcaacaacctccaagacaccccc
tccccataccctctacctaccaaccctgcagctggctggcaccaggcttc
cagtttttttttcttttcccagaattaggttcctagggaaagttcaatac
cttggggttcattgtttcaaaggtctgaaagtccaaggagaagaacaaag
gttcttctacggcatcttcattcttgctagaatggctacagcttggccta
gaactttttgcagtacttgccactagtttgttctaagagcttgatggtcc
cacctacaggcactgtgcagaacttcctaggaattccacaccacacgtgg
gacatccctgagtcttaaagagttgctgggcaggaaatggggcagtattt
gcaaagcaagctttaaaagagagtggtctctgtctgagttatcaaactac
aaaagaatgaaggccaggtctgacctttacctacacctgtgggacaggac
tggatgtgaagacgatcatggtggggtgtctcagctcccagaatgccacg
agctactgttatatacaattctcattgcagaaagatggcctacatagaag
cagcattacacatgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_37937954_37939124
seq2: B6Ng01-063A01.b_44_1170 (reverse)

seq1  AGGCTGCCACATGGGTGACTAAGACTGTTCAGCTCTTAACTGCTGAGCTC  50
      ||||||||   | |||||||||||||||| ||||||  |||||||| |||
seq2  AGGCTGCCCACTAGGTGACTAAGACTGTTAAGCTCT--ACTGCTGA-CTC  47

seq1  CTGCCCCCCTGTCTTTCTTGTAAAGGAAGGAAACAGAGGCTTGGAGACGT  100
      |||||||     ||||||| |    ||||  ||||||||||| |||||||
seq2  CTGCCCC-----CTTTCTTCT----GAAGAGAACAGAGGCTT-GAGACGT  87

seq1  TTGTTTAGCTAGCATCTTACAGCTAATGGTAGTTTTCCAGGAAGCTCAAT  150
      ||| ||||||||||| ||||||||||| |||||||  || ||||||||||
seq2  TTG-TTAGCTAGCAT-TTACAGCTAAT-GTAGTTT--CAAGAAGCTCAAT  132

seq1  GGCTCATTTTCCATAGCATTAGGGATAATCTTTTGTTGTTGTTGTTTGTT  200
       ||||||||  ||||||||   |||||||| |||||   |||||||| ||
seq2  -GCTCATTT--CATAGCAT--AGGATAATC-TTTGTGTGTGTTGTTTATT  176

seq1  TTATTTTTCCTCTTACCTTTTCTTTTCTTTTTTTTTTTTTTTTTTTTTTT  250
      ||       ||| |||||||||          ||| |||||| | |||||
seq2  TT-------CTC-TACCTTTTC----------TTTCTTTTTTATCTTTTT  208

seq1  TTTTTTGTTATTTTGATTCTGGGTATGGAACTCGGAGTCTCACAGATGCT  300
      ||| ||||   |||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGT--ATTTGATTCTGGGTATGGAACTCGGAGTCTCACAGATGCT  256

seq1  AATCGTGCGATCTTTTGATGAACTACACCCCCGCCCCGCGCATTTGGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGTGCGATCTTTTGATGAACTACACCCCCGCCCCGCGCATTTGGTCA  306

seq1  TTTTTGCTGTGGATGATCTTCACACCTGGGTACCTGAAGCTTTCTATTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTGTGGATGATCTTCACACCTGGGTACCTGAAGCTTTCTATTCC  356

seq1  TTAAACTCCATTCTTGTGCCTTGACAAGTACCTCGTGAGAGTGTTGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTCCATTCTTGTGCCTTGACAAGTACCTCGTGAGAGTGTTGCATG  406

seq1  CGATTTGATTGCCTCCACCTTCAGTCGGTAAATGGCCTTAATTGAGCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTTGATTGCCTCCACCTTCAGTCGGTAAATGGCCTTAATTGAGCAGC  456

seq1  TGTAGTGTTGAGGGAATTGGGTTTAGGTTTTGGCAGGTGAAGCACGGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGTTGAGGGAATTGGGTTTAGGTTTTGGCAGGTGAAGCACGGTGG  506

seq1  CTTTTGCCTCGGGGGAGTTTATGTTGTGAAAGGAACCCACAATGCCTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCCTCGGGGGAGTTTATGTTGTGAAAGGAACCCACAATGCCTAAT  556

seq1  GGTCCCCCAAGCCAAGTTCCCATGGGAAGGCCAGGGTTCAGAGAGGCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCCCAAGCCAAGTTCCCATGGGAAGGCCAGGGTTCAGAGAGGCTCA  606

seq1  CCGCACTGGGTCTGCACTTCCAGGAAAAAGTACAAGCAGGGGCCGAGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCACTGGGTCTGCACTTCCAGGAAAAAGTACAAGCAGGGGCCGAGGTC  656

seq1  CCAGCAGGAGAGGACAGGCCGGTTTGGAAGTCCAGGGTATAATTTGCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGGAGAGGACAGGCCGGTTTGGAAGTCCAGGGTATAATTTGCTGT  706

seq1  TGAAGACGATGTACCAGGAGATAACAGGATTGACGGGTTACTTAGAGCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACGATGTACCAGGAGATAACAGGATTGACGGGTTACTTAGAGCCC  756

seq1  GGGTCAGGTGGGGCAGAAGTTGACCTTTCCATCTTCTGGACATAGGGACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGGTGGGGCAGAAGTTGACCTTTCCATCTTCTGGACATAGGGACC  806

seq1  CTAAGATTTGAGCAGAGTAGTGACAGTCTGTCCTCCCAGGGTCTTGGCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATTTGAGCAGAGTAGTGACAGTCTGTCCTCCCAGGGTCTTGGCAG  856

seq1  CATCCTTACAAGGGAGAAGGAGGTTTGAGCATTGGTGCTTTGGTGACCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTACAAGGGAGAAGGAGGTTTGAGCATTGGTGCTTTGGTGACCAC  906

seq1  CATGATCCAAAGCAGAGAACACATCCCAGGGCACCTGGTACAGGATGCAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATCCAAAGCAGAGAACACATCCCAGGGCACCTGGTACAGGATGCAC  956

seq1  TAAGCTAAGTACTTAGGATGCTAATTGCCCCGAGCCACTGCACTGATGCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTAAGTACTTAGGATGCTAATTGCCCCGAGCCACTGCACTGATGCA  1006

seq1  CACACAAGGAAGTCTCGGTGAAAAGCTGAGTCACAATCTCTGGCTCCATA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAGGAAGTCTCGGTGAAAAGCTGAGTCACAATCTCTGGCTCCATA  1056

seq1  GCTGCCGATTCAGGCGAGCCACCTTTGAGAGGTGTAAGGAAGGTGCGGCC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCGATTCAGGCGAGCCACCTTTGAGAGGTGTAAGGAAGGTGCGGCC  1106

seq1  AGGTAGCAGGCGACTGAATTC  1171
      |||||||||||||||||||||
seq2  AGGTAGCAGGCGACTGAATTC  1127

seq1: chr13_37844963_37846046
seq2: B6Ng01-063A01.g_65_1130

seq1  GAATTCAAAGGCCAGTCTGGTCTTTATAAGCAAGATCCTGATTCAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGCCAGTCTGGTCTTTATAAGCAAGATCCTGATTCAAAACA  50

seq1  AAATGAAACAAAACCAACCAGAGTCCGGTCTGATGATGTGTCCCTTCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAACAAAACCAACCAGAGTCCGGTCTGATGATGTGTCCCTTCAAT  100

seq1  CAGCATTCAAGAGGCAGACACAGGAGGGTATGGGGGGACTTTTGGGATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTCAAGAGGCAGACACAGGAGGGTATGGGGGGACTTTTGGGATAG  150

seq1  CATTGGAAATGTAAATGAGGAAAATACCTAATAAAAAAATATTAAAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGAAATGTAAATGAGGAAAATACCTAATAAAAAAATATTAAAAAAA  200

seq1  AAAAAAAAAAAGAAGCAGACAAAGGTGGCTCTCTACACTGACTGTTGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAGAAGCAGACAAAGGTGGCTCTCTACACTGACTGTTGGTC  250

seq1  TGGTTTATAGAGTGAGCTCCAGTACAGCAAGGCTACGGTGCGACCACCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTATAGAGTGAGCTCCAGTACAGCAAGGCTACGGTGCGACCACCTA  300

seq1  ACTCAAATACCAGCCACCATGAGAGACCTTTTCCCTTCTTCAACTGTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAATACCAGCCACCATGAGAGACCTTTTCCCTTCTTCAACTGTGAG  350

seq1  CCAAAATAAAACCTGGGCTCCTGTTCTGCAACCTCCTACAAAGTGATCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATAAAACCTGGGCTCCTGTTCTGCAACCTCCTACAAAGTGATCTG  400

seq1  ACAGGTAGTCAGAACTGTGCCAGAACCATATCTCCTAAAATCTCTTTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTAGTCAGAACTGTGCCAGAACCATATCTCCTAAAATCTCTTTCTA  450

seq1  GGAGATATGGTGTGTGGTCCAACCTCTGCAACAACCTCCAAGACACCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATATGGTGTGTGGTCCAACCTCTGCAACAACCTCCAAGACACCCCC  500

seq1  TCCCCATACCCTCTACCTACCAACCCTGCAGCTGGCTGGCACCAGGCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATACCCTCTACCTACCAACCCTGCAGCTGGCTGGCACCAGGCTTC  550

seq1  CAGTTTTTTTTTCTTTTCCCAGAATTAGGTTCCTAGGGAAAGTTCAATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTTTTTTCTTTTCCCAGAATTAGGTTCCTAGGGAAAGTTCAATAC  600

seq1  CTTGGGGTTCATTGTTTCAAAGGTCTGAAAGTCCAAGGAGAAGAACAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGGTTCATTGTTTCAAAGGTCTGAAAGTCCAAGGAGAAGAACAAAG  650

seq1  GTTCTTCTACGGCATCTTCATTCTTGCTAGAATGGCTACAGCTTGGCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCTACGGCATCTTCATTCTTGCTAGAATGGCTACAGCTTGGCCTA  700

seq1  GAACTTTTTGCAGTACTTGCCACTAGTTTGTTCTAAGAGCTTGATGGTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTTTGCAGTACTTGCCACTAGTTTGTTCTAAGAGCTTGATGGTCC  750

seq1  CACCTACAGGCACTGTGCAGAACTTCCTAGGAATTCCACACCACACGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTACAGGCACTGTGCAGAACTTCCTAGGAATTCCACACCACACGTGG  800

seq1  GACATCCCTGAGTCTTAAAGAGTTGCTGGGCAGGAAATGGGGCAGTATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCCCTGAGTCTTAAAGAGTTGCTGGGCAGGAAATGGGGCAGTATTT  850

seq1  GCAAAGCAAGCTTTAAAAGAGAGTGGTCTCTGTCTGAGTTATCAAACTAA  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCAAAGCAAGCTTTAAAAGAGAGTGGTCTCTGTCTGAGTTATCAAACT-A  899

seq1  CAAAAGAATGAAGGCCAGGTCTGACCTTTTACCTACACCTGTGGGACAGG  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAAAAGAATGAAGGCCAGGTCTGACC-TTTACCTACACCTGTGGGACAGG  948

seq1  ACTGGATGTGAAAGACGAATCATGGTGGGGTGTCTCCAGCTCCCCAGAAA  1000
      |||||||||| |||||| ||||||||||||||||| ||||| ||||||| 
seq2  ACTGGATGTG-AAGACG-ATCATGGTGGGGTGTCT-CAGCT-CCCAGAA-  993

seq1  TGGCCACAGAGCTACTGTTTAATATACAA-TCTCATATGCAGAAAAGATG  1049
        ||||| |||||||||||  |||||||| |||||| ||||| |||||||
seq2  -TGCCAC-GAGCTACTGTT--ATATACAATTCTCAT-TGCAG-AAAGATG  1037

seq1  GGCCCTACATAGACAGGCAGCATTTACACAGTGAC  1084
      |  |||||||||  | |||||| ||||||| ||||
seq2  G--CCTACATAG--AAGCAGCA-TTACACA-TGAC  1066