BAC Information

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BAC

Clone NameB6Ng01-063J16
Chromosome13 (Build37)
Map Location 38,035,747 - 38,142,806
singlet/doubletdoublet
Overlap geneRreb1, Ssr1, Cage1, Riok1
Upstream geneF13a1, Ly86, LOC100042794, LOC100042800, LOC100042802, LOC100041624
Downstream geneDsp, 6530403A03Rik, Bmp6, Txndc5, Muted, Eef1e1, LOC621102, Slc35b3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063J16.bB6Ng01-063J16.g
ACCDH883647DH883648
length1,044750
definitionDH883647|Mus musculus domesticus DNA, BAC clone: B6Ng01-063J16, 5' end.DH883648|Mus musculus domesticus DNA, BAC clone: B6Ng01-063J16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,035,747 - 38,036,800)(38,142,066 - 38,142,806)
sequence
gaattccttttaaatccctaaacatgttttataatgtcagtgtcactttt
ccaaccacatgaggtcttccatgaaaatgtaccccagatttcctcctgta
cccgatgctaaaaatactaaggcggggacagttttcccttctagggttgt
attaaatattcagttttacactgagacgctttcctctgcgtggcagatgt
ggcctactctactcttgaatgttcttggttcttattcaggggatgcgtgg
aggagccattccattggtaggcacctggaccagaccttttacaatataaa
catgaattttttttatgtattttatatgtgtgagtgctctgtctgcatgt
acacctacctgcatgacagaagagagcatcaaataccattacagatgatt
gtgagccattgtgtggttgctgagaattgaactctgaccaggcagccagt
gatcttaaactacatttcatttgtaggaaggaagcgatccttaactgtgg
agatgaccaacaaaatatgtggggttttttgaggacaagccataatagga
cctgcccattcaagttgactagtcactctcttgtatgagaggaggttaag
tctattgttcccaagaatcataaaccaggtcacaggctatcctgctaaaa
cactcccccctagtggaagtctggagtgcaaccaagctacctttgttctt
tgtacacagaaagaccttatccacccaccctcagaatggaattgtgaatg
ggacagttcagactgggggcatgcacttggctttggttcagaattcattt
ttattttcataagtctatcattttaaatacattctctccagttcaaacag
cctatgtgctgggttagtccaggggctgaaatggaagaaacacaaatttg
agagactagtctaggatgcatagcaagctccattttcaaagcagaagatg
tttttgctgagaacccaataataggacagcagggtaaagtaggaaaaagt
agaatttaccacaagtaacttattttaactggacttggcttatt
gaattcactgagatccgcgtggacaagtctagcgtcctgatacattttcc
tcatgtactgaatgacctgcaggtacaactcccgtgccttggactctgac
agctggacatttttcaaaagtggggctggcctggaatgaaaagggagtgg
acataaactcattacgatcaagttttcttgcctcactccacagtgtccac
acacctctcctgtaactcatcacgtgaactgacaagggaatagtgacagg
caccttcccagcacgctaataaattaaacatttaaaagcacggctgcttt
tgtcattctgaagcaccatgaaacatcacagcagtgaatcgcagcagtta
tgcactaacacataagaaaagaataatgaaagccgggcgtggtggtgcac
gcctttaatcccagcagaggcaggcggatttctgagttcgaggccagcct
ggtctacacagtgagttccagggacagccagagctatacagagaaaccat
gtcttgaaaaaccaaaaaaaaaaaaaaaagaaagaaagaaaaagaatgaa
aataaagggaggaaataattacctagtacatggctcacacagctttcacc
atgaaatttctctgatgttccacatacttacatgtcatccttgccaatga
aagcccatgagaagaacatgacttcttagcctgattggttctgggacatg
ggtatgtttgctgtttttaagcctgtgatgtagaaaaaaagaacaattgg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_38035747_38036800
seq2: B6Ng01-063J16.b_49_1092

seq1  GAATTCCTTTTAAATCCCTAAACATGTTTTATAATGTCAGTGTCACTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTAAATCCCTAAACATGTTTTATAATGTCAGTGTCACTTTT  50

seq1  CCAACCACATGAGGTCTTCCATGAAAATGTACCCCAGATTTCCTCCTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCACATGAGGTCTTCCATGAAAATGTACCCCAGATTTCCTCCTGTA  100

seq1  CCCGATGCTAAAAATACTAAGGCGGGGACAGTTTTCCCTTCTAGGGTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGATGCTAAAAATACTAAGGCGGGGACAGTTTTCCCTTCTAGGGTTGT  150

seq1  ATTAAATATTCAGTTTTACACTGAGACGCTTTCCTCTGCGTGGCAGATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATATTCAGTTTTACACTGAGACGCTTTCCTCTGCGTGGCAGATGT  200

seq1  GGCCTACTCTACTCTTGAATGTTCTTGGTTCTTATTCAGGGGATGCGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTACTCTACTCTTGAATGTTCTTGGTTCTTATTCAGGGGATGCGTGG  250

seq1  AGGAGCCATTCCATTGGTAGGCACCTGGACCAGACCTTTTACAATATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCATTCCATTGGTAGGCACCTGGACCAGACCTTTTACAATATAAA  300

seq1  CATGAATTTTTTTTATGTATTTTATATGTGTGAGTGCTCTGTCTGCATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATTTTTTTTATGTATTTTATATGTGTGAGTGCTCTGTCTGCATGT  350

seq1  ACACCTACCTGCATGACAGAAGAGAGCATCAAATACCATTACAGATGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTACCTGCATGACAGAAGAGAGCATCAAATACCATTACAGATGATT  400

seq1  GTGAGCCATTGTGTGGTTGCTGAGAATTGAACTCTGACCAGGCAGCCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCATTGTGTGGTTGCTGAGAATTGAACTCTGACCAGGCAGCCAGT  450

seq1  GATCTTAAACTACATTTCATTTGTAGGAAGGAAGCGATCCTTAACTGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTAAACTACATTTCATTTGTAGGAAGGAAGCGATCCTTAACTGTGG  500

seq1  AGATGACCAACAAAATATGTGGGGTTTTTTGAGGACAAGCCATAATAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACCAACAAAATATGTGGGGTTTTTTGAGGACAAGCCATAATAGGA  550

seq1  CCTGCCCATTCAAGTTGACTAGTCACTCTCTTGTATGAGAGGAGGTTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCATTCAAGTTGACTAGTCACTCTCTTGTATGAGAGGAGGTTAAG  600

seq1  TCTATTGTTCCCAAGAATCATAAACCAGGTCACAGGCTATCCTGCTAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGTTCCCAAGAATCATAAACCAGGTCACAGGCTATCCTGCTAAAA  650

seq1  CACTCCCCCCTAGTGGAAGTCTGGAGTGCAACCAAGCTACCTTTGTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCCCCTAGTGGAAGTCTGGAGTGCAACCAAGCTACCTTTGTTCTT  700

seq1  TGTACACAGAAAGACCTTATCCACCCACCCTCAGAATGGAATTGTGAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACAGAAAGACCTTATCCACCCACCCTCAGAATGGAATTGTGAATG  750

seq1  GGACAGTTCAGACTGGGGGCATGCACTTGGCTTTGGTTTCAGAATTCATT  800
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGACAGTTCAGACTGGGGGCATGCACTTGGCTTTGG-TTCAGAATTCATT  799

seq1  TTTATTTTCATAAGTCTATCATTTTAAATACATTCTCTCCAGTTCAAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTCATAAGTCTATCATTTTAAATACATTCTCTCCAGTTCAAACA  849

seq1  GCCTATGTGCTGGGTTAGTCCA-GGGCTGAAATGGAAGAAACACAAATTT  899
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCCTATGTGCTGGGTTAGTCCAGGGGCTGAAATGGAAGAAACACAAATTT  899

seq1  GAGAGACTAGTCTAGGATGCATAGCAAGCTCCATTTTCAAAAGCAGAAGA  949
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GAGAGACTAGTCTAGGATGCATAGCAAGCTCCATTTTC-AAAGCAGAAGA  948

seq1  TGTTTTTGCTGAGAACCCAATAATAGGAACAGCCAGGGTAAAAAGTAGGA  999
      ||||||||||||||||||||||||||| |||| ||||||  |||||||| 
seq2  TGTTTTTGCTGAGAACCCAATAATAGG-ACAG-CAGGGT--AAAGTAGG-  993

seq1  AAAAAGTAGAATTAACCACAAAGTAACCTTATTTTTAAACTGGACTTGGC  1049
      ||||||||||||| ||||| |||||| ||||||||  |||||||||||||
seq2  AAAAAGTAGAATTTACCAC-AAGTAA-CTTATTTT--AACTGGACTTGGC  1039

seq1  TTATT  1054
      |||||
seq2  TTATT  1044

seq1: chr13_38142066_38142806
seq2: B6Ng01-063J16.g_66_815 (reverse)

seq1  CCAATTG-TCTTTTTTTCTACATCACAGGC-TAAAAACAGCAAACATA-C  47
      ||||||| |||||||||||||||||||||| ||||||||||||||||| |
seq2  CCAATTGTTCTTTTTTTCTACATCACAGGCTTAAAAACAGCAAACATACC  50

seq1  CATGT-CCAGAACCAATCAGGCTAAGAAGTCATGTTCTTCTCATGGGC-T  95
      ||||| |||||||||||||||||||||||||||||||||||||||||| |
seq2  CATGTCCCAGAACCAATCAGGCTAAGAAGTCATGTTCTTCTCATGGGCTT  100

seq1  TCATTGGCAAGGATGACATGTAAGTATGTGGAACATCAGAG-AATTTCAT  144
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCATTGGCAAGGATGACATGTAAGTATGTGGAACATCAGAGAAATTTCAT  150

seq1  GGTG-AAGCTGTGTGAGCCATGTACTAGGTAATTATTTCCTCCCTTTCTT  193
      |||| |||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGTGAAAGCTGTGTGAGCCATGTACTAGGTAATTATTTCCTCCCTTTATT  200

seq1  TTCATTC-TTTTCTTTCTTTCTTTTTTTTTTTTTTTTGGTTTTTCAAGAC  242
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCTTTTTCTTTCTTTCTTTTTTTTTTTTTTTTGGTTTTTCAAGAC  250

seq1  ATGGTTTCTCTGTATAGCTCTGGCTGT-CCTGGAACTCACTGTGTAGACC  291
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATGGTTTCTCTGTATAGCTCTGGCTGTCCCTGGAACTCACTGTGTAGACC  300

seq1  AGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCTGGGATTAAAGGC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCTGGGATTAAAGGC  350

seq1  GTGCACCACCACGCCCGGCTTTCATTATTCTTTTCTTATGTGTTAGTGCA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACCACCACGCCCGGCTTTCATTATTCTTTTCTTATGTGTTAGTGCA  400

seq1  TAACTGCTGCGATTCACTGCTGTGATGTTTCATGGTGCTTCAGAATGACA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCTGCGATTCACTGCTGTGATGTTTCATGGTGCTTCAGAATGACA  450

seq1  AAAGCAGCCGTGCTTTTAAATGTTTAATTTATTAGCGTGCTGGGAAGGTG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGCCGTGCTTTTAAATGTTTAATTTATTAGCGTGCTGGGAAGGTG  500

seq1  CCTGTCACTATTCCCTTGTCAGTTCACGTGATGAGTTACAGGAGAGGTGT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCACTATTCCCTTGTCAGTTCACGTGATGAGTTACAGGAGAGGTGT  550

seq1  GTGGACACTGTGGAGTGAGGCAAGAAAACTTGATCGTAATGAGTTTATGT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACACTGTGGAGTGAGGCAAGAAAACTTGATCGTAATGAGTTTATGT  600

seq1  CCACTCCCTTTTCATTCCAGGCCAGCCCCACTTTTGAAAAATGTCCAGCT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCCTTTTCATTCCAGGCCAGCCCCACTTTTGAAAAATGTCCAGCT  650

seq1  GTCAGAGTCCAAGGCACGGGAGTTGTACCTGCAGGTCATTCAGTACATGA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGTCCAAGGCACGGGAGTTGTACCTGCAGGTCATTCAGTACATGA  700

seq1  GGAAAATGTATCAGGACGCTAGACTTGTCCACGCGGATCTCAGTGAATTC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATGTATCAGGACGCTAGACTTGTCCACGCGGATCTCAGTGAATTC  750