BAC Information

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BAC

Clone NameB6Ng01-063N23
Chromosome13 (Build37)
Map Location 78,891,223 - 79,017,789
singlet/doubletdoublet
Overlap geneEG666883
Upstream gene1110033M05Rik, 1700013G10Rik, Nr2f1, EG666856, LOC268676, LOC100042683, LOC622365, LOC100043052
Downstream geneLOC666925
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063N23.bB6Ng01-063N23.g
ACCDH883834DH883835
length1,115913
definitionDH883834|Mus musculus domesticus DNA, BAC clone: B6Ng01-063N23, 5' end.DH883835|Mus musculus domesticus DNA, BAC clone: B6Ng01-063N23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,016,662 - 79,017,789)(78,891,223 - 78,891,856)
sequence
gaattctttcatgtatcgacagtgtgtgtgtgtgtgtgtgtgtgtgtgtt
ctatgttctcattgaatagagtcatataatataatatggctgaactataa
tttgctcatgaatatctgcccataggtgttaggttgttttcaacttggaa
cttggttctattctaaaagaatggaaatgctatgactattcataggcaga
catggtaccaatatgtttcagtaccttatactaaacaatattattggcga
tgctatcctcaggcaagtatatgtttagtttcataagcaatggacaaatt
gaatatagcaatgtactttccttcagcactgtcccagaatgctccatgct
ccatattcattgaaatacacaatattgtcagcatttttccttagcattct
aataggtacttgcaagtgcctgacagaagcattgatgtttatcctctatg
gactctgattttccctagcagtagttgtgtagcacatactctctgtcttt
gacccttttaattctattacctgccctgttatgtctaccttttggtgact
gttttcaaatttatgatctcactctatatatttctctttaaaactgagaa
actataagacattgttaaaaacattatataagtccatgagctaaatttaa
aaagtcatgaaaatgtagcatttaatttttgatattttatttcttttcca
taaatgagtttctgatagtctaaaatgcatattagatttgtttgggtttg
ttttgttttgttttgtttttgctattgttgttatttggtttggtttttcc
aagtctgagttttctaaactctggaatggaatttgtaaaagacataaatg
actgaaagaagacaaaaaaaaaaatcacactttcagcaagaaccccatgg
aagttttcttttgaaatgttaatacattgtttagcatattgttggcactg
ccactttagtatataatttctgttcactgctagctcaaaggagagaaaga
gagagatgaacaggggtcaataactatggagttttagtataggtgttcat
caaaagtttcaaaacatcccttagtttagacataaaaaaattcaagccag
ggagtgggtagtgca
gaattctttgttcagttctgaaaaaaattacaggtaaggtctattgattt
ctaagttgaaagatagggtcagattctagaattctgtctccatctacttg
aagccatgctagtacacagtagaatccttaaaccaactcctaaacctgat
aaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaa
tggcctttctctacacaaagactaaacaggctgagaaagaaattagggaa
acaacacccttctcaatagtcacaaataatataaaatatcttggcgtgac
tctaactaaggaagcaaaagatctgtatgataaaaacttcaaatctctga
agaaagaaattaaagaagatctcaggagatgtaaggatctcccatgctca
tggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaat
ctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacg
aattagaaggagcaatttgcaaattcatctggaataacaaaaaacctagg
atagcaaaaactcttctcaaggataaaagaagctctggtggaatcaccat
gcctgacctaaagctttactacagagcaattgtgataaaaactgcatggt
actggtatagagacagacaagtagaccaatggaatagaattgaagaccca
gaaatgagcccacacacctatggtcacttgatcttcgacaagggagctaa
aaccatccagtggaagaaagacagcattttcaaaaattggtgctggcaca
actggttgttatcatgtagaagaatgcgaatcgatccatacttatctcct
tgtactaaggtcaaatctaagtggatcaaggaaattcacataaaaccaga
gacactgaaactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_79016662_79017789
seq2: B6Ng01-063N23.b_47_1161 (reverse)

seq1  TGCACTA-CCACTCCCTGGCTTGATATTTTTTTAATTGTCTAATACTTAA  49
      ||||||| |||||||||||||||| |||||||||  ||||||| || |||
seq2  TGCACTACCCACTCCCTGGCTTGA-ATTTTTTTA--TGTCTAA-AC-TAA  45

seq1  GGGATGTTTTGAAAACTTTTTGATG-ACAACTATACTTAAAAACTCCATA  98
      ||||||||||||||   |||||||| ||| |||||||  |||||||||||
seq2  GGGATGTTTTGAAA--CTTTTGATGAACACCTATACT--AAAACTCCATA  91

seq1  GTTATTTGACCCCTGTTCATCTCTCTCTTTCTCTCCTTTGAGCTAGCAGT  148
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTA-TTGACCCCTGTTCATCTCTCTCTTTCTCTCCTTTGAGCTAGCAGT  140

seq1  GAACAGAAATTATATACTAAAAGTGGCAGTGCCAACAATATGCTAAAACA  198
      |||||||||||||||||| ||||||||||||||||||||||||| |||||
seq2  GAACAGAAATTATATACT-AAAGTGGCAGTGCCAACAATATGCT-AAACA  188

seq1  ATGTATTAACATTTCAAAAGAAAACTTCCATGGGGTTCTTTGCTGAAAGT  248
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATGTATTAACATTTCAAAAGAAAACTTCCATGGGGTTC-TTGCTGAAAGT  237

seq1  GTGATTTTTTTTTTTTGTCTTCTTTCAGTCATTTATGTCTTTTTACAAAT  298
      |||| |||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTGA-TTTTTTTTTTTGTCTTCTTTCAGTCATTTATGTC-TTTTACAAAT  285

seq1  TCCATTCCAGAGTTTAGAAAACTCAGACTTGGAAAAACCAAACCAAATAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCCAGAGTTTAGAAAACTCAGACTTGGAAAAACCAAACCAAATAA  335

seq1  CAACAATAGCAAAAACAAAACAAAACAAAACAAACCCAAACAAATCTAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATAGCAAAAACAAAACAAAACAAAACAAACCCAAACAAATCTAAT  385

seq1  ATGCATTTTAGACTATCAGAAACTCATTTATGGAAAAGAAATAAAATATC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTTTAGACTATCAGAAACTCATTTATGGAAAAGAAATAAAATATC  435

seq1  AAAAATTAAATGCTACATTTTCATGACTTTTTAAATTTAGCTCATGGACT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTAAATGCTACATTTTCATGACTTTTTAAATTTAGCTCATGGACT  485

seq1  TATATAATGTTTTTAACAATGTCTTATAGTTTCTCAGTTTTAAAGAGAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATGTTTTTAACAATGTCTTATAGTTTCTCAGTTTTAAAGAGAAA  535

seq1  TATATAGAGTGAGATCATAAATTTGAAAACAGTCACCAAAAGGTAGACAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGAGTGAGATCATAAATTTGAAAACAGTCACCAAAAGGTAGACAT  585

seq1  AACAGGGCAGGTAATAGAATTAAAAGGGTCAAAGACAGAGAGTATGTGCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGCAGGTAATAGAATTAAAAGGGTCAAAGACAGAGAGTATGTGCT  635

seq1  ACACAACTACTGCTAGGGAAAATCAGAGTCCATAGAGGATAAACATCAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACTACTGCTAGGGAAAATCAGAGTCCATAGAGGATAAACATCAAT  685

seq1  GCTTCTGTCAGGCACTTGCAAGTACCTATTAGAATGCTAAGGAAAAATGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGTCAGGCACTTGCAAGTACCTATTAGAATGCTAAGGAAAAATGC  735

seq1  TGACAATATTGTGTATTTCAATGAATATGGAGCATGGAGCATTCTGGGAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATATTGTGTATTTCAATGAATATGGAGCATGGAGCATTCTGGGAC  785

seq1  AGTGCTGAAGGAAAGTACATTGCTATATTCAATTTGTCCATTGCTTATGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGAAGGAAAGTACATTGCTATATTCAATTTGTCCATTGCTTATGA  835

seq1  AACTAAACATATACTTGCCTGAGGATAGCATCGCCAATAATATTGTTTAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAACATATACTTGCCTGAGGATAGCATCGCCAATAATATTGTTTAG  885

seq1  TATAAGGTACTGAAACATATTGGTACCATGTCTGCCTATGAATAGTCATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGTACTGAAACATATTGGTACCATGTCTGCCTATGAATAGTCATA  935

seq1  GCATTTCCATTCTTTTAGAATAGAACCAAGTTCCAAGTTGAAAACAACCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCCATTCTTTTAGAATAGAACCAAGTTCCAAGTTGAAAACAACCT  985

seq1  AACACCTATGGGCAGATATTCATGAGCAAATTATAGTTCAGCCATATTAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCTATGGGCAGATATTCATGAGCAAATTATAGTTCAGCCATATTAT  1035

seq1  ATTATATGACTCTATTCAATGAGAACATAGAACACACACACACACACACA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATGACTCTATTCAATGAGAACATAGAACACACACACACACACACA  1085

seq1  CACACACACTGTCGATACATGAAAGAATTC  1128
      ||||||||||||||||||||||||||||||
seq2  CACACACACTGTCGATACATGAAAGAATTC  1115

seq1: chr13_78891223_78891856
seq2: B6Ng01-063N23.g_69_702

seq1  GAATTCTTTGTTCAGTTCTGAAAAAAATTACAGGTAAGGTCTATTGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGTTCTGAAAAAAATTACAGGTAAGGTCTATTGATTT  50

seq1  CTAAGTTGAAAGATAGGGTCAGATTCTAGAATTCTGTCTCCATCTACTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTTGAAAGATAGGGTCAGATTCTAGAATTCTGTCTCCATCTACTTG  100

seq1  AAGCCATGCTAGTACACAGTAGAATCCTTAAACCAACTCCTAAACCTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATGCTAGTACACAGTAGAATCCTTAAACCAACTCCTAAACCTGAT  150

seq1  AAACAGCTTCGGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCTTCGGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGTCAA  200

seq1  TGGCCTTTCTCTACACAAAGACTAAACAGGCTGAGAAAGAAATTAGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTTCTCTACACAAAGACTAAACAGGCTGAGAAAGAAATTAGGGAA  250

seq1  ACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGGCGTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGGCGTGAC  300

seq1  TCTAACTAAGGAAGCAAAAGATCTGTATGATAAAAACTTCAAATCTCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTAAGGAAGCAAAAGATCTGTATGATAAAAACTTCAAATCTCTGA  350

seq1  AGAAAGAAATTAAAGAAGATCTCAGGAGATGTAAGGATCTCCCATGCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAATTAAAGAAGATCTCAGGAGATGTAAGGATCTCCCATGCTCA  400

seq1  TGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAAT  450

seq1  CTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACG  500

seq1  AATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAAACCTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAAACCTAGG  550

seq1  ATAGCAAAAACTCTTCTCAAGGATAAAAGAAGCTCTGGTGGAATCACCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAAAAACTCTTCTCAAGGATAAAAGAAGCTCTGGTGGAATCACCAT  600

seq1  GCCTGACCTAAAGCTTTACTACAGAGCAATTGTG  634
      ||||||||||||||||||||||||||||||||||
seq2  GCCTGACCTAAAGCTTTACTACAGAGCAATTGTG  634