BAC Information

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BAC

Clone NameB6Ng01-064L03
Chromosome13 (Build37)
Map Location 107,005,401 - 107,140,838
singlet/doubletdoublet
Overlap genenone
Upstream geneRnf180, Htr1a, EG668025, Olfr717-ps1
Downstream geneLOC631097, EG620949, Ipo11, Dimt1, Kif2a, LOC100040322, LOC100040350, LOC100040366
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064L03.bB6Ng01-064L03.g
ACCDH884403DH884404
length1,0241,109
definitionDH884403|Mus musculus domesticus DNA, BAC clone: B6Ng01-064L03, 5' end.DH884404|Mus musculus domesticus DNA, BAC clone: B6Ng01-064L03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,139,812 - 107,140,838)(107,005,401 - 107,006,526)
sequence
gaattcttactggcttgatcatatgtaggtcacatataggcaaatgcagc
tgctatgagctgatgagaggaatgaccctggcatgtcccgaagacactat
ttttcaagcattctttctaacctctggttatttgagtctttccagtccct
cttttacagtgtgccctgagcttttggggaaggagtgatatagatgtccc
attttggcctgcattgctattgctttatgttattggtgatccacctctta
atggatgacaatgagaactaattaatactgtatgctatggacataggtag
actcttgaattttccatcttcttgcaatatgaacttggaaaaaaataact
gaactcttttttccctctgtgtttttatttctatgagatgggaacatcaa
ttatatatgtatatgataaggttggtgtgaggcttaaatgaaaataaata
tgtaaatctccttgtcatgggaaataatttgctgcacaagcagacatcac
catttctttgcagcatacagggaacatgtaaatctagtagctactgtctc
tggagtctcctgatcaacactgagatgtcacaagaagagaatttcagtat
gtgaagagatctgctcatttgggagtttatcctgaattctttggaaagta
ctagggaaatctttatagttatcataggaaaatcaatcaccagggacata
gagtgaattatttgaataacaagactgtaatatgcaaatttaagattttt
tgctctctctgcttgctaagctttctcagtcactgtgtgagaattcatta
cctactatgagtttctgtaccctcatgagtatagatattttcttggtccc
tagatcataatcatctccgctcagtatgaatttctagtcctcatacatgg
ctaagtcgcctttccatcttggctgtctgcctacatggattctgaaaatt
catggagatccacgagagtggcattagtaacgtggatgggaaatacatta
gcacctttttctttgaaagctgat
gaattcaaaaacaaattattgaaaagaataaataaatgcaacttgaatgg
tatacataaatatcatctttgagatacatgaaagggttatatgcttaaat
atagtagaaataagtacatatataataataataataataataataataat
aataataataataataataaacacaatacacctgacaatagtggctttct
ctgaggaagaaaggaggatgggtgttaacattattaagaggccatgaagt
gaaaaattaacaaagaagggtgtgcagtaggtttggaggagataaaaaag
gaaaaaatgcagtaatcacttcaaaaaataggcaaaatgatttttaaaga
cattaggcaggacatggagatttcatagtaatcattgccaatgttttagt
tatttctcattcaaactgttgtattttctcttactcttcgttaattaata
attaatcattttctcatatagtcagaaatttattttggctggagtgatga
tggtgcctgcctgtaatcacaggcggcagaggtgagagatcaccgcaagt
ccaaggccaataaattctacatagtaagttccaggttagccaaggctgta
tagtcttttctaatcctgtctcagagtctggctctgtctttattgattaa
ttttttttaatttgaaactatagaaccaaaatgtccttttcttgtagaaa
aagcaaaaacctgtgattaaatataataaaaatgtcatgtttttctcagc
tgaaccatattgaccatcactttcataagttgatctttgttaacttgctg
gtatttgattttacatagcacagacacaaacacacccacacatacacaca
catgcactcacacatgcacacacacacacacactttcttttctctaggct
gagtgaaaactgctatcatacatataattctttcaatatataacttgctt
tatttataaagtctgactcatcagttgtagtatgtgtttcagacatggaa
atagagctatgacacacagcagatatcctcatttgtcttatcacattaat
gacaatcatccggaagtcaaaccacacctcctctatgcaaacttatagca
tctagcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_107139812_107140838
seq2: B6Ng01-064L03.b_42_1066 (reverse)

seq1  ATCAGCTCTTCAAGAAATAAGTGCTAATGTATTTTCCCATCACTGTTTAC  50
      ||||||| |  |||||| | ||||||||||| ||||||||| |   ||||
seq2  ATCAGCTTTCAAAGAAAAAGGTGCTAATGTA-TTTCCCATC-CACGTTAC  48

seq1  TATTG-CACTCTCTGTGATCTCCATGAATTTTCAG-ATTCATGTAGGCAG  98
      || || |||||||   ||||||||||||||||||| || |||||||||||
seq2  TAATGCCACTCTCGTGGATCTCCATGAATTTTCAGAATCCATGTAGGCAG  98

seq1  AACAG-CAAGATGGAAAGGCGACTTTAGCCATGTATGA-GACTAGAAA-T  145
       |||| ||||||||||||||||| |||||||||||||| ||||||||| |
seq2  -ACAGCCAAGATGGAAAGGCGAC-TTAGCCATGTATGAGGACTAGAAATT  146

seq1  CATACTGAGCTGAAGATGATTATGATCTAGGAGACCAAGAAAATATCTAT  195
      |||||||||| | |||||||||||||||||| ||||||||||||||||| 
seq2  CATACTGAGC-GGAGATGATTATGATCTAGG-GACCAAGAAAATATCTA-  193

seq1  TACTCATGAGGGTACAGATACTCATAGTAGGTAATGAATTCTCACACAGT  245
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TACTCATGAGGGTACAGAAACTCATAGTAGGTAATGAATTCTCACACAGT  243

seq1  GACTGAGAAAGCTTAGCAAGCAGAGAGAGCAAAAAATCTTAAATTTGCAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGAAAGCTTAGCAAGCAGAGAGAGCAAAAAATCTTAAATTTGCAT  293

seq1  ATTACAGTCTTGTTATTCAAATAATTCACTCTATGTCCCTGGTGATTGAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGTCTTGTTATTCAAATAATTCACTCTATGTCCCTGGTGATTGAT  343

seq1  TTTCCTATGATAACTATAAAGATTTCCCTAGTACTTTCCAAAGAATTCAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTATGATAACTATAAAGATTTCCCTAGTACTTTCCAAAGAATTCAG  393

seq1  GATAAACTCCCAAATGAGCAGATCTCTTCACATACTGAAATTCTCTTCTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACTCCCAAATGAGCAGATCTCTTCACATACTGAAATTCTCTTCTT  443

seq1  GTGACATCTCAGTGTTGATCAGGAGACTCCAGAGACAGTAGCTACTAGAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATCTCAGTGTTGATCAGGAGACTCCAGAGACAGTAGCTACTAGAT  493

seq1  TTACATGTTCCCTGTATGCTGCAAAGAAATGGTGATGTCTGCTTGTGCAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGTTCCCTGTATGCTGCAAAGAAATGGTGATGTCTGCTTGTGCAG  543

seq1  CAAATTATTTCCCATGACAAGGAGATTTACATATTTATTTTCATTTAAGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTATTTCCCATGACAAGGAGATTTACATATTTATTTTCATTTAAGC  593

seq1  CTCACACCAACCTTATCATATACATATATAATTGATGTTCCCATCTCATA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACCAACCTTATCATATACATATATAATTGATGTTCCCATCTCATA  643

seq1  GAAATAAAAACACAGAGGGAAAAAAGAGTTCAGTTATTTTTTTCCAAGTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAAAACACAGAGGGAAAAAAGAGTTCAGTTATTTTTTTCCAAGTT  693

seq1  CATATTGCAAGAAGATGGAAAATTCAAGAGTCTACCTATGTCCATAGCAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGCAAGAAGATGGAAAATTCAAGAGTCTACCTATGTCCATAGCAT  743

seq1  ACAGTATTAATTAGTTCTCATTGTCATCCATTAAGAGGTGGATCACCAAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATTAATTAGTTCTCATTGTCATCCATTAAGAGGTGGATCACCAAT  793

seq1  AACATAAAGCAATAGCAATGCAGGCCAAAATGGGACATCTATATCACTCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAAGCAATAGCAATGCAGGCCAAAATGGGACATCTATATCACTCC  843

seq1  TTCCCCAAAAGCTCAGGGCACACTGTAAAAGAGGGACTGGAAAGACTCAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAAAAGCTCAGGGCACACTGTAAAAGAGGGACTGGAAAGACTCAA  893

seq1  ATAACCAGAGGTTAGAAAGAATGCTTGAAAAATAGTGTCTTCGGGACATG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCAGAGGTTAGAAAGAATGCTTGAAAAATAGTGTCTTCGGGACATG  943

seq1  CCAGGGTCATTCCTCTCATCAGCTCATAGCAGCTGCATTTGCCTATATGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTCATTCCTCTCATCAGCTCATAGCAGCTGCATTTGCCTATATGT  993

seq1  GACCTACATATGATCAAGCCAGTAAGAATTCC  1027
      ||||||||||||||||||||||||||||||||
seq2  GACCTACATATGATCAAGCCAGTAAGAATTCC  1025

seq1: chr13_107005401_107006526
seq2: B6Ng01-064L03.g_68_1176

seq1  GAATTCAAAAACAAATTATTGAAAAGAATAAATAAATGCAACTTGAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAACAAATTATTGAAAAGAATAAATAAATGCAACTTGAATGG  50

seq1  TATACATAAATATCATCTTTGAGATACATGAAAGGGTTATATGCTTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATAAATATCATCTTTGAGATACATGAAAGGGTTATATGCTTAAAT  100

seq1  ATAGTAGAAATAAGTACATATATAATAATAATAATAATAATAATAATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGAAATAAGTACATATATAATAATAATAATAATAATAATAATAAT  150

seq1  AATAATAATAATAATAATAAACACAATACACCTGACAATAGTGGCTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAATAATAATAATAAACACAATACACCTGACAATAGTGGCTTTCT  200

seq1  CTGAGGAAGAAAGGAGGATGGGTGTTAACATTATTAAGAGGCCATGAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAAGAAAGGAGGATGGGTGTTAACATTATTAAGAGGCCATGAAGT  250

seq1  GAAAAATTAACAAAGAAGGGTGTGCAGTAGGTTTGGAGGAGATAAAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTAACAAAGAAGGGTGTGCAGTAGGTTTGGAGGAGATAAAAAAG  300

seq1  GAAAAAATGCAGTAATCACTTCAAAAAATAGGCAAAATGATTTTTAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATGCAGTAATCACTTCAAAAAATAGGCAAAATGATTTTTAAAGA  350

seq1  CATTAGGCAGGACATGGAGATTTCATAGTAATCATTGCCAATGTTTTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGCAGGACATGGAGATTTCATAGTAATCATTGCCAATGTTTTAGT  400

seq1  TATTTCTCATTCAAACTGTTGTATTTTCTCTTACTCTTCGTTAATTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTCATTCAAACTGTTGTATTTTCTCTTACTCTTCGTTAATTAATA  450

seq1  ATTAATCATTTTCTCATATAGTCAGAAATTTATTTTGGCTGGAGTGATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATCATTTTCTCATATAGTCAGAAATTTATTTTGGCTGGAGTGATGA  500

seq1  TGGTGCCTGCCTGTAATCACAGGCGGCAGAGGTGAGAGATCACCGCAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCTGCCTGTAATCACAGGCGGCAGAGGTGAGAGATCACCGCAAGT  550

seq1  CCAAGGCCAATAAATTCTACATAGTAAGTTCCAGGTTAGCCAAGGCTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCCAATAAATTCTACATAGTAAGTTCCAGGTTAGCCAAGGCTGTA  600

seq1  TAGTCTTTTCTAATCCTGTCTCAGAGTCTGGCTCTGTCTTTATTGATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTTTCTAATCCTGTCTCAGAGTCTGGCTCTGTCTTTATTGATTAA  650

seq1  TTTTTTTTAATTTGAAACTATAGAACCAAAATGTCCTTTTCTTGTAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAATTTGAAACTATAGAACCAAAATGTCCTTTTCTTGTAGAAA  700

seq1  AAGCAAAAACCTGTGATTAAATATAATAAAAATGTCATGTTTTTCTCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAAACCTGTGATTAAATATAATAAAAATGTCATGTTTTTCTCAGC  750

seq1  TGAACCATATTGACCATCACTTTCATAAGTTGATCTTTGTTAACTTGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCATATTGACCATCACTTTCATAAGTTGATCTTTGTTAACTTGCTG  800

seq1  GTATTTGATTTTACATAGCACAGACACAAACACACCCACACATACACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGATTTTACATAGCACAGACACAAACACACCCACACATACACACA  850

seq1  CATGCACTCACACATGCACACACACACACACACTTTC-TCTCTCTAGGCT  899
      ||||||||||||||||||||||||||||||||||||| | ||||||||||
seq2  CATGCACTCACACATGCACACACACACACACACTTTCTTTTCTCTAGGCT  900

seq1  GAGTGAAAAACTGCTAATCATACATATAATTTCTTTCAATATATAACTTG  949
      ||||| ||||||||| ||||||||||||| ||||||||||||||||||||
seq2  GAGTG-AAAACTGCT-ATCATACATATAA-TTCTTTCAATATATAACTTG  947

seq1  CTTTATTTTATAAAGTCTGAACTCATCAAGTTGTAGTATGTGTTTCAGAC  999
      ||||| ||||||||||||| ||||||| ||||||||||||||||||||||
seq2  CTTTA-TTTATAAAGTCTG-ACTCATC-AGTTGTAGTATGTGTTTCAGAC  994

seq1  AATGGAAATAGAGCTATGAACAACACAGGCAAGATATCCTCATTTGTCTT  1049
       ||||||||||||||||||   ||||||   |||||||||||||||||||
seq2  -ATGGAAATAGAGCTATGA--CACACAG--CAGATATCCTCATTTGTCTT  1039

seq1  ATTCACATTACATGACAACCATCACGGAAGGTCAAACCACAACTCACTCT  1099
      | |||||||| ||||||| |||| ||||| ||||||||||| ||| ||||
seq2  A-TCACATTA-ATGACAATCATC-CGGAA-GTCAAACCACACCTC-CTCT  1084

seq1  ATGCAAACTTAATAGCATCCTAGCCTT  1126
      |||||||||| ||||||| ||||||||
seq2  ATGCAAACTT-ATAGCAT-CTAGCCTT  1109