BAC Information

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BAC

Clone NameB6Ng01-064M24
Chromosome6 (Build37)13 (Build37)
Map Location 67,987,476 - 67,988,53242,103,977 - 42,105,056
singlet/doubletsingletsinglet
Overlap geneIgk
Upstream geneE230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435
Downstream geneEG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064M24.bB6Ng01-064M24.g
ACCDH884486DH884487
length1,0491,056
definitionDH884486|Mus musculus domesticus DNA, BAC clone: B6Ng01-064M24, 5' end.DH884487|Mus musculus domesticus DNA, BAC clone: B6Ng01-064M24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(67,987,476 - 67,988,532)(42,103,977 - 42,105,056)
sequence
gaattcttttacctcagtgtactacagtccttgacttcattcactgtcac
tcttacgttacctctgttgaggtgtccctccaactccaacattcaaagtg
aaatactcgctcactagacacaacccttttacttttcccattttatacct
ggccataatacttttgtggactctacttttgcctctcccactaatctgca
caggagagatggattccccttttaaacagaatgcaccacctcttaaaagt
ggctggtttaactaattcatgtaactactcagtctatctgttcattagat
tccattgttccctggagccaaggctgtcaatttgtctcagtcactatgaa
gccacaccgctctcatcctacagctttacaaaatgactgactgctttatg
ggcctgtgcacataactgactctttctgatttatcagtattctccatccc
ctaccatctcctaatacttccttattgccaaatgactaactactgttctc
caccaacttaacaataattgcttccttcctattctgacacaattcacccc
tgcaaaatacttacaagccactgagacaaaatccttcaccactctatctg
cgagagtccatttctttctgactcttctctgggtcttcctctttcaacct
ctttcactttgcccagccccctctggaagctttttttttttttttctgta
ataaaatcatatattctcaagtctatagcaatcatttttctaaagtttct
taagagcaaaagttggtaaacacatggctcacaaacatctcacaaattaa
atctcttctgatcaataattcctgaattacaatgctcatttcctagtatt
agataatatcaaaacgaattatatatggacctaaaccagattcagcacaa
atcaaattctttgatttatctcaaatgtaaactggggtgtacatggacag
gacttagtactctgcagtggcagcaggaaactgcattccctggaaattgt
atcaactattactggtctctctaagggaagggttcaggagtaatagggg
gaattctataagaagaccaatggggaaggggcaaagcctagaaaatgaag
ttttccatccatctgcagttaagcaaattagaaaaccagaagtcatattt
cctatttctcttcattctccatcattttgagaggaaaaaaaaaatacatc
atcaattcaactttcaaagtatctctcaaatctcatcgccttcgactgag
tttcaacagcaacgtcctgaacatgtctcacagggaagccacagcgatct
gacgcgtcacaaagtcgctcctgttctgaacacctgtctacatggcagct
aggagatctctaaagctgctcattctctattgtgagtgtacacctctccc
atgctgtttaaggggacgatcacatcatgaccttgaggacagaagttctt
gtcatgaagtgccttcgcttttccagcttccatccaggcctctcctgttc
gctaagctaacttttcttcctctttctccctacatctgtactcaatattc
atctcacacccaatttcttccacattgattcttctcagcaatcatgcctc
aactgaaatggcagctgccaatcaatgcttcctcgaccacactgtcccta
ttttgatctcaggtagtaatcacaaaactgtttaattacctactattttg
acctattatagatatcccaaggcaggtaatatgtctgcctcattcactac
tgcacttcagtgtccagccttaacatatcatggttgtccaaaagtgaatg
aattggtaaacacacttgcataattgggtccagaaatactttgaaaggat
gaaatacctattgaagtgaatattaataggaataactattgatttggcta
tttaaagacagaaaccatgttacagggctagatgtaagtcctcaagggag
tagatggcttcccaacaatacagtggggtgcaatgtatctttcacatgtc
tgtctactactaaatggtctacaataacttgtaatgcagcactagaatag
cacttatcatactaataaactcacgacgatatgtgtcatagaaatacatt
gattgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_67987476_67988532
seq2: B6Ng01-064M24.b_47_1095 (reverse)

seq1  CCCCTATTACTTCCTGAACCCTTCCCTTAAGAGAGA-CAGTAATAGTTTG  49
      |||||||||| ||||||||||||||||| ||||||| |||||||||||  
seq2  CCCCTATTAC-TCCTGAACCCTTCCCTT-AGAGAGACCAGTAATAGTT--  46

seq1  GATACAATTTTCCAGGGAATGCAGTTTTCCTGCTG-CACTGCAGAGGTAC  98
      ||||||| |||||||||||||||| |||||||||| ||||||||| ||||
seq2  GATACAA-TTTCCAGGGAATGCAG-TTTCCTGCTGCCACTGCAGA-GTAC  93

seq1  TAAGTCCTGTCCATTGGTACACTCAGTTTTACATTTGAGATAAAATCAAA  148
      ||||||||||||||  |||||| |   |||||||||||||| ||||||||
seq2  TAAGTCCTGTCCAT--GTACACCCCAGTTTACATTTGAGAT-AAATCAAA  140

seq1  GAATTTGATTTGTGCTGAATCTGGTTTAGGTCCATATATAATTCGTTTTG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGATTTGTGCTGAATCTGGTTTAGGTCCATATATAATTCGTTTTG  190

seq1  ATATTATCTAATACTAGGAAATGAGCATTGTAATTCAGGAATTATTGATC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATCTAATACTAGGAAATGAGCATTGTAATTCAGGAATTATTGATC  240

seq1  AGAAGAGATTTAATTTTGTGAGATGTTTGTGAGCCATGTGTTTACCAACT  298
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGATTTAA-TTTGTGAGATGTTTGTGAGCCATGTGTTTACCAACT  289

seq1  TTTGCTCTTAAGAAACTTTAGAAAAATGATTGCTATAGACTTGAGAATAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCTTAAGAAACTTTAGAAAAATGATTGCTATAGACTTGAGAATAT  339

seq1  ATGATTTTATTACAG-AAAAAAAAAAAAAAGCTTCCAGAGGGGGCTGGGC  397
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATGATTTTATTACAGAAAAAAAAAAAAAAAGCTTCCAGAGGGGGCTGGGC  389

seq1  AAAGTGAAAGAGGTTGAAAGAGGAAGACCCAGAGAAGAGTCAGAAAGAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAAAGAGGTTGAAAGAGGAAGACCCAGAGAAGAGTCAGAAAGAAA  439

seq1  TGGACTCTCGCAGATAGAGTGGTGAAGGATTTTGTCTCAGTGGCTTGTAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCTCGCAGATAGAGTGGTGAAGGATTTTGTCTCAGTGGCTTGTAA  489

seq1  GTATTTTGCAGGGGTGAATTGTGTCAGAATAGGAAGGAAGCAATTATTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTGCAGGGGTGAATTGTGTCAGAATAGGAAGGAAGCAATTATTGT  539

seq1  TAAGTTGGTGGAGAACAGTAGTTAGTCATTTGGCAATAAGGAAGTATTAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTGGTGGAGAACAGTAGTTAGTCATTTGGCAATAAGGAAGTATTAG  589

seq1  GAGATGGTAGGGGATGGAGAATACTGATAAATCAGAAAGAGTCAGTTATG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGTAGGGGATGGAGAATACTGATAAATCAGAAAGAGTCAGTTATG  639

seq1  TGCACAGGCCCATAAAGCAGTCAGTCATTTTGTAAAGCTGTAGGATGAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGGCCCATAAAGCAGTCAGTCATTTTGTAAAGCTGTAGGATGAGA  689

seq1  GCGGTGTGGCTTCATAGTGACTGAGACAAATTGACAGCCTTGGCTCCAGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTGTGGCTTCATAGTGACTGAGACAAATTGACAGCCTTGGCTCCAGG  739

seq1  GAACAATGGAATCTAATGAACAGATAGACTGAGTAGTTACATGAATTAGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATGGAATCTAATGAACAGATAGACTGAGTAGTTACATGAATTAGT  789

seq1  TAAACCAGCCACTTTTAAGAGGTGGTGCATTCTGTTTAAAAGGGGAATCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCAGCCACTTTTAAGAGGTGGTGCATTCTGTTTAAAAGGGGAATCC  839

seq1  ATCTCTCCTGTGCAGATTAGTGGGAGAGGCAAAAGTAGAGTCCACAAAAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCCTGTGCAGATTAGTGGGAGAGGCAAAAGTAGAGTCCACAAAAG  889

seq1  TATTATGGCCAGGTATAAAATGGGAAAAGTAAAAGGGTTGTGTCTAGTGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGGCCAGGTATAAAATGGGAAAAGTAAAAGGGTTGTGTCTAGTGA  939

seq1  GCGAGTATTTCACTTTGAATGTTGGAGTTGGAGGGACACCTCAACAGAGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGTATTTCACTTTGAATGTTGGAGTTGGAGGGACACCTCAACAGAGG  989

seq1  TAACGTAAGAGTGACAGTGAATGAAGTCAAGGACTGTAGTACACTGAGGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGTAAGAGTGACAGTGAATGAAGTCAAGGACTGTAGTACACTGAGGT  1039

seq1  AAAAGAATTC  1057
      ||||||||||
seq2  AAAAGAATTC  1049

seq1: chr13_42103977_42105056
seq2: B6Ng01-064M24.g_70_1125

seq1  GAATTCTATAAGAAGACCAATGGGGAAGGGGCAAAGCCTAGAAAATGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAAGAAGACCAATGGGGAAGGGGCAAAGCCTAGAAAATGAAG  50

seq1  TTTTCCATCCATCTGCAGTTAAGCAAATTAGAAAACCAGAAGTCATATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATCCATCTGCAGTTAAGCAAATTAGAAAACCAGAAGTCATATTT  100

seq1  CCTATTTCTCTTCATTCTCCATCATTTTGAGAGGAAAAAAAAAATACATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTCTCTTCATTCTCCATCATTTTGAGAGGAAAAAAAAAATACATC  150

seq1  ATCAATTCAACTTTCAAAGTATCTCTCAAATCTCATCGCCTTCGACTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTCAACTTTCAAAGTATCTCTCAAATCTCATCGCCTTCGACTGAG  200

seq1  TTTCAACAGCAACGTCCTGAACATGTCTCACAGGGAAGCCACAGCGATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACAGCAACGTCCTGAACATGTCTCACAGGGAAGCCACAGCGATCT  250

seq1  GACGCGTCACAAAGTCGCTCCTGTTCTGAACACCTGTCTACATGGCAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCGTCACAAAGTCGCTCCTGTTCTGAACACCTGTCTACATGGCAGCT  300

seq1  AGGAGATCTCTAAAGCTGCTCATTCTCTATTGTGAGTGTACACCTCTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATCTCTAAAGCTGCTCATTCTCTATTGTGAGTGTACACCTCTCCC  350

seq1  ATGCTGTTTAAGGGGACGATCACATCATGACCTTGAGGACAGAAGTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTTTAAGGGGACGATCACATCATGACCTTGAGGACAGAAGTTCTT  400

seq1  GTCATGAAGTGCCTTCGCTTTTCCAGCTTCCATCCAGGCCTCTCCTGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGAAGTGCCTTCGCTTTTCCAGCTTCCATCCAGGCCTCTCCTGTTC  450

seq1  GCTAAGCTAACTTTTCTTCCTCTTTCTCCCTACATCTGTACTCAATATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGCTAACTTTTCTTCCTCTTTCTCCCTACATCTGTACTCAATATTC  500

seq1  ATCTCACACCCAATTTCTTCCACATTGATTCTTCTCAGCAATCATGCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACACCCAATTTCTTCCACATTGATTCTTCTCAGCAATCATGCCTC  550

seq1  AACTGAAATGGCAGCTGCCAATCAATGCTTCCTCGACCACACTGTCCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAATGGCAGCTGCCAATCAATGCTTCCTCGACCACACTGTCCCTA  600

seq1  TTTTGATCTCAGGTAGTAATCACAAAACTGTTTAATTACCTACTATTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATCTCAGGTAGTAATCACAAAACTGTTTAATTACCTACTATTTTG  650

seq1  ACCTATTATAGATATCCCAAGGCAGGTAATATGTCTGCCTCATTCACTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTATAGATATCCCAAGGCAGGTAATATGTCTGCCTCATTCACTAC  700

seq1  TGCACTTCAGTGTCCAGCCTTAACATATCATGGTTGTCCAAAAGTGAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTCAGTGTCCAGCCTTAACATATCATGGTTGTCCAAAAGTGAATG  750

seq1  AATTGGTAAACACACTTGCATAATTGGGTCCAGAAATACTTTGAAAGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGTAAACACACTTGCATAATTGGGTCCAGAAATACTTTGAAAGGAT  800

seq1  GAAAATACCTATTGAAGTGAATATTAATAGGAATAACTATTGATTTGGCT  850
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-AAATACCTATTGAAGTGAATATTAATAGGAATAACTATTGATTTGGCT  849

seq1  ATTTAAAGACAGAAACCATGTTACAGGGCTAGATGTAAGGCCCTCAAGGG  900
      |||||||||||||||||||||||||||||||||||||| | |||||||||
seq2  ATTTAAAGACAGAAACCATGTTACAGGGCTAGATGTAA-GTCCTCAAGGG  898

seq1  AGGTAGAATGGCTTCCCAAACAATACAGTGGGGTTGCAATGTATCTTTCC  950
      | |||| |||||||||| ||||||||||||||| ||||||||||||||| 
seq2  A-GTAG-ATGGCTTCCC-AACAATACAGTGGGG-TGCAATGTATCTTTC-  943

seq1  ACCATGTCTGTTCTACTACTAAAATGGTCTTAACAATAACTTGTAAATGC  1000
        |||||||| ||||||||| |||||||||  |||||||||||| |||||
seq2  -ACATGTCTG-TCTACTACT-AAATGGTCT--ACAATAACTTGT-AATGC  987

seq1  AGCCACTAAGAATAGCACTTAATCAATACCAAATAAACTCACGACAGATT  1050
      || |||| |||||||||||| ||| ||| | |||||||||||||| ||  
seq2  AG-CACT-AGAATAGCACTT-ATC-ATA-CTAATAAACTCACGAC-GA--  1029

seq1  TATGTGTTCATTAAGAAATACAATGATTGG  1080
      |||||| ||||  ||||||||| |||||||
seq2  TATGTG-TCAT--AGAAATACATTGATTGG  1056