BAC Information

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BAC

Clone NameB6Ng01-065F19
Chromosome13 (Build37)
Map Location 5,478,701 - 5,479,738
singlet/doubletsinglet
Overlap genenone
Upstream geneAkr1c20, Akr1c21, Akr1e1, EG432721, EG432723
Downstream gene1700016G22Rik, Klf6, LOC100039388, LOC100039395
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065F19.bB6Ng01-065F19.g
ACCDH884859DH884860
length1,1201,008
definitionDH884859|Mus musculus domesticus DNA, BAC clone: B6Ng01-065F19, 5' end.DH884860|Mus musculus domesticus DNA, BAC clone: B6Ng01-065F19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctatttcactcttgattgaatttttaaaattgggttatttgta
tctttagtgtataaattcttgagttctttataaattgtggatattagtgt
tatgtcaaatgtaggattggtgaagatcctttcccaatctgtaggattcg
attttgtcctattgacagtgtcctttgccttaaagaaggttttcagtgtc
atgaggtctcacttattggttgttgatcttagagcctgagccattgttct
tctgttcagggagttgtatcctgtacaaagtagtttaaggtttttcccta
gtttttgttatattagatttattgtatccagttttatgttgaggtgtttt
actttgtgtttctttgtcaaaaataaaatctccataggtctgtgggttta
tttttgggttttcaattcaattatattgatcaacctctcttttcctattc
cataatattttttattactatttcactgtggtacagcttgaagtcaggga
tggtgatacctccagaagttcattattgttaaggattattttagtggtcc
tagatttttttgttattccatatgatattgagaattgttatgttaacgtc
tgtaaggaattgtactggaattttgtggcaattccactgaaatctgtaat
ttacttttggtaagatggccattttcactattttaattctactgatccat
gagcatggggcatctttccatcttctgatatctttcctcaaactctgtct
tcagcatcttgatgctcatgtcatataaggaattttacaccaaatatgtt
atattatttgtagatattatgaaagggtgctgtttcctttatttcttttc
ttggcccattgaagactactgcttttttttttttttggtaattttgtatc
catcatctttgctgaagtgtttaccagtaacagagttctttgtgaatttg
ggggtcgcctaagtatactgtcatatcattcagaaatagcaatgctttga
tactcctttcaatttgcattggtacaagtggggggtgaaacccattcctg
tgtgtgggcctaaaatgtgattagttagcattgatgtttccaagtgtccg
attgaatacacctagagaaa
gaattcattctaatatggccaatggtagagaagtagaaagtgtctaatct
atcttatgtgccttccaatgaagtgtcctcttcccactcaaccagacaca
gcctctggtatttcccttcaaccattggtacactacaaaaggaagattaa
ttgttttgctctaactcaggatgagtctatttcattgaaattgcccttgt
ttattttcccccagttaagagcttttcaataaacatttacttatcgttga
aagttaagaatgtaaaaaaaaagttctttttaatttgattgagatttatt
attattgttatataagtacatagtttgtcctgtcttataatcctcagcat
ctctcatgcagatgctaccacatctgtatcaatttagaataaaatagttt
caccatctgactcaagtacttcttaataattttggttttgctttcattga
attttatttacctacaaaatttatgatttatgaaatacccatgtttcact
ttgtgttttctgccttaaaacttgatggttttgacatcagatttacaaat
gtatttcatgacctcccttctggcctgtgccttctgcctgggcaaatcat
cagcatgttgcccctttgaagacccacagtttgaaggcctcccaagagat
ctgttgtacccagggcaatagaccccacagtctgaaggctttccaggaga
tgtgctatacccaaggcaacaaaccccacaatctgaatgcctttaggaaa
tctgatgcagccagaacaatagatcattggcatatttgccccactgaaga
ccccacagtctgagacctcccaggagatccactgcagacaggccataggt
ctgccatgagactgagtacccagggacccaggagcagactagacacccag
gcagttacagcagaacacagatagcagttcacgagccatatactttgggg
catcagactcattctccactgcaaaaacactagaacgcacatctgaaaca
tgatgcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_5478701_5479738
seq2: B6Ng01-065F19.g_68_1075 (reverse)

seq1  TGGCATCATGGTTTTCAGATATGTTGCGGTTTCTAGTGTTTTCTGCAGTG  50
      ||||||||||  ||||||||    ||||  |||||||||||| |||||| 
seq2  TGGCATCATG--TTTCAGAT---GTGCG--TTCTAGTGTTTT-TGCAGT-  41

seq1  GGAGAAATGAGTTCTGATGGCCCCAAAGTATATTGGCTTCCGTTGAACTT  100
      |||| |||||| |||||| ||||||||||||| |||||  || |||||| 
seq2  GGAG-AATGAG-TCTGAT-GCCCCAAAGTATA-TGGCT--CG-TGAACT-  83

seq1  GCCTATCTGGTTGTTTCTGCTGTTAACTGGCCTGGGTGTCTATGTCTGCC  150
        |||||||  || |||||||| ||||| ||||||||||||| ||||| |
seq2  -GCTATCTG--TG-TTCTGCTG-TAACT-GCCTGGGTGTCTA-GTCTG-C  125

seq1  TCCTGGGTCCCTGGGTTACTTCAGGTCTCATGGCAGACCTATGGCCTTGT  200
      ||||||||||||||| ||| ||| |||||||||||||||||||||| |||
seq2  TCCTGGGTCCCTGGG-TAC-TCA-GTCTCATGGCAGACCTATGGCC-TGT  171

seq1  CTGCAGTGGATCTCCTGGGAGGTCTTCAGACTGTGGGGTCTTCAGTGGGG  250
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTGCAGTGGATCTCCTGGGAGGTC-TCAGACTGTGGGGTCTTCAGTGGGG  220

seq1  CAAATATGCCAATGATCTATTGTTCTGGCTGCATCAGATTTCCTAAAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATGCCAATGATCTATTGTTCTGGCTGCATCAGATTTCCTAAAGGC  270

seq1  ATTCAGATTGTGGGGTTTGTTGCCTTGGGTATAGCACATCTCCTGGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGATTGTGGGGTTTGTTGCCTTGGGTATAGCACATCTCCTGGAAAG  320

seq1  CCTTCAGACTGTGGGGTCTATTGCCCTGGGTACAACAGATCTCTTGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGACTGTGGGGTCTATTGCCCTGGGTACAACAGATCTCTTGGGAG  370

seq1  GCCTTCAAACTGTGGGTCTTCAAAGGGGCAACATGCTGATGATTTGCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCAAACTGTGGGTCTTCAAAGGGGCAACATGCTGATGATTTGCCCA  420

seq1  GGCAGAAGGCACAGGCCAGAAGGGAGGTCATGAAATACATTTGTAAATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAGGCACAGGCCAGAAGGGAGGTCATGAAATACATTTGTAAATCT  470

seq1  GATGTCAAAACCATCAAGTTTTAAGGCAGAAAACACAAAGTGAAACATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCAAAACCATCAAGTTTTAAGGCAGAAAACACAAAGTGAAACATGG  520

seq1  GTATTTCATAAATCATAAATTTTGTAGGTAAATAAAATTCAATGAAAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCATAAATCATAAATTTTGTAGGTAAATAAAATTCAATGAAAGCA  570

seq1  AAACCAAAATTATTAAGAAGTACTTGAGTCAGATGGTGAAACTATTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAATTATTAAGAAGTACTTGAGTCAGATGGTGAAACTATTTTAT  620

seq1  TCTAAATTGATACAGATGTGGTAGCATCTGCATGAGAGATGCTGAGGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATTGATACAGATGTGGTAGCATCTGCATGAGAGATGCTGAGGATT  670

seq1  ATAAGACAGGACAAACTATGTACTTATATAACAATAATAATAAATCTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACAGGACAAACTATGTACTTATATAACAATAATAATAAATCTCAA  720

seq1  TCAAATTAAAAAGAACTTTTTTTTTACATTCTTAACTTTCAACGATAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTAAAAAGAACTTTTTTTTTACATTCTTAACTTTCAACGATAAGT  770

seq1  AAATGTTTATTGAAAAGCTCTTAACTGGGGGAAAATAAACAAGGGCAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTATTGAAAAGCTCTTAACTGGGGGAAAATAAACAAGGGCAATT  820

seq1  TCAATGAAATAGACTCATCCTGAGTTAGAGCAAAACAATTAATCTTCCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGAAATAGACTCATCCTGAGTTAGAGCAAAACAATTAATCTTCCTT  870

seq1  TTGTAGTGTACCAATGGTTGAAGGGAAATACCAGAGGCTGTGTCTGGTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTGTACCAATGGTTGAAGGGAAATACCAGAGGCTGTGTCTGGTTG  920

seq1  AGTGGGAAGAGGACACTTCATTGGAAGGCACATAAGATAGATTAGACACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAAGAGGACACTTCATTGGAAGGCACATAAGATAGATTAGACACT  970

seq1  TTCTACTTCTCTACCATTGGCCATATTAGAATGAATTC  1038
      ||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTTCTCTACCATTGGCCATATTAGAATGAATTC  1008