BAC Information

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BAC

Clone NameB6Ng01-065O05
Chromosome13 (Build37)
Map Location 118,285,399 - 118,439,092
singlet/doubletdoublet
Overlap geneHcn1
Upstream geneLOC100041169, Parp8, LOC668288, LOC623312, Emb, EG623365, LOC382807
Downstream geneLOC100041695, LOC674926, Mrps30, LOC668309
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065O05.bB6Ng01-065O05.g
ACCDH885232DH885233
length1,084788
definitionDH885232|Mus musculus domesticus DNA, BAC clone: B6Ng01-065O05, 5' end.DH885233|Mus musculus domesticus DNA, BAC clone: B6Ng01-065O05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,437,990 - 118,439,092)(118,285,399 - 118,286,191)
sequence
gaattcttttgatgatttattgtgaattaggtacatcttttatacattca
taactacagtgtaatacttctgggaactctcagtggtttcacaagtaata
ttgcttcagggatgaattaacatcaatagatgctataaatgttttgagca
ttttatttagaaaaaattgaaatcttgaaaataacaaattacgcttgaga
gatcagtcagaacttgctctttcttctgcatcaaatcatgttcataaaaa
cacaaagagcgatttattaactgagtttcctttcataaccacagtcaatc
ctcacaatcatagtttaatttttatttaaaaccttttggttttcaaaaat
cccattaattgccctatgatgtggtacatactatatgagaataatatagt
gtcttttctaaactctgggtcctctttttaatatcctcagtgggaatatg
cttaagtctcccaaaacaacacctgaatattgatctgatatgtcctcagg
ttttcccatcatcaatgagaatattcaaactgctactgagaaaaaaaata
agtgcttttagtgagtttcacaaaagagatttctcgtttgggtctgaatt
tatttctgatgctctaatatctcatagggaatgaatttattgttcatgaa
cagcagaaggaaaaaatatcagcacaggcttatacaaggaatgcaactat
aagtgattgaaacaagaatatctctttatgtccacctttctttctttgat
tcctttttcatccttttggatttgtttctctcacattttgttttgttgtc
tgtctgtctgtgggtctgttttagagataatgcttcattgagacgatatt
agcttagaattcattgtgtttcatagcatgacttgaactcctcgccctcc
tccttgcactcctgatcttactcttagctttagtgctgggatcatgagca
tctactatcattctagtttacctctcgtaataaaaaagaaagttatatgt
tcattatgagggaaaacttacctgacttaaataagacaattatgcataat
taaatgctaaatgcacttatctctgttactggca
gaattcccctctacaccttgtctaccttcctctaagtttcttatcttgct
tcaatcaatctctttttcactggatacacacacacacacacacacacaca
cacacacacacacacacacactcacacatgcacacacacacacacacaca
cacacactcacacatgcacacacacacacacacacacactctcacacaca
cacttgcacacacacacacacaaacacgatttatatttttatacattaac
aagagcatttatttcagcagtgctgacattttggctgcttagctgttcct
aatagtcacagagccttgacaatttcctggaatgaagtgtactttcaagc
gttttgtttagttaaagaggccatgaacttgagagaaagctaggttgggt
caggctatggagaacttgaatttaataaatcaaaaggaaaaatgacacaa
gtttattttattttttaaaaatgaaagaaatatacatttaacattagtct
attgaaataataatgcaatcttataacagacaataaaaatgtatgtttat
attgaactgcaggtcattcatggataataatctgtctttatttctaaaga
aattagtgacctttccactcttttctcaacaatatattctaattttgaga
tatttttgggaaagatgttttatgagaaaagaagggaaaatgttctttgt
ctatcttttatttgcataatacctgctttgaaatgatactccctcataaa
aatgatgttaaaaaaggagtcattgttggaaaggtaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_118437990_118439092
seq2: B6Ng01-065O05.b_47_1130 (reverse)

seq1  TGCCAGTATACAGGAAGAATTAAGTGCATTTAAGCATTTAAATATTGCAT  50
      |||||||| ||||  |||  ||||||||||| ||||||||| || |||||
seq2  TGCCAGTA-ACAG--AGA--TAAGTGCATTT-AGCATTTAATTA-TGCAT  43

seq1  AAATTGGTCTTATTTAAAGTCAAGCTAAGTTTTCCCTCATATTGAACATA  100
      ||  | ||||||||| ||||| || |||||||||||||||| ||||||||
seq2  AA--TTGTCTTATTT-AAGTC-AGGTAAGTTTTCCCTCATAATGAACATA  89

seq1  TAACTTTTCTTTTTTTATTTACGAGAGGTAAACTAGAAATGATAGTAGAT  150
      |||| ||||||||||   |||||||||||||||||| |||||||||||||
seq2  TAAC-TTTCTTTTTT--ATTACGAGAGGTAAACTAG-AATGATAGTAGAT  135

seq1  GCTCATGATCCCAGCACTTAAAGCTAAGGAGTTAAGATCAGGAAGTGCAA  200
      ||||||||||||||||| ||||||||| ||| |||||||||| |||||||
seq2  GCTCATGATCCCAGCAC-TAAAGCTAA-GAG-TAAGATCAGG-AGTGCAA  181

seq1  GGAGGAGGGCGAGGAGTTCAAGTCATGCTATGAAACACAATGAATTCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGGCGAGGAGTTCAAGTCATGCTATGAAACACAATGAATTCTAA  231

seq1  GCTAATATCGTCTCAATGAAGCATTATCTCTAAAACAGACCCACAGACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATATCGTCTCAATGAAGCATTATCTCTAAAACAGACCCACAGACAG  281

seq1  ACAGACAACAAAACAAAATGTGAGAGAAACAAATCCAAAAGGATGAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAACAAAACAAAATGTGAGAGAAACAAATCCAAAAGGATGAAAAA  331

seq1  GGAATCAAAGAAAGAAAGGTGGACATAAAGAGATATTCTTGTTTCAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCAAAGAAAGAAAGGTGGACATAAAGAGATATTCTTGTTTCAATCA  381

seq1  CTTATAGTTGCATTCCTTGTATAAGCCTGTGCTGATATTTTTTCCTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAGTTGCATTCCTTGTATAAGCCTGTGCTGATATTTTTTCCTTCTG  431

seq1  CTGTTCATGAACAATAAATTCATTCCCTATGAGATATTAGAGCATCAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCATGAACAATAAATTCATTCCCTATGAGATATTAGAGCATCAGAA  481

seq1  ATAAATTCAGACCCAAACGAGAAATCTCTTTTGTGAAACTCACTAAAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTCAGACCCAAACGAGAAATCTCTTTTGTGAAACTCACTAAAAGC  531

seq1  ACTTATTTTTTTTCTCAGTAGCAGTTTGAATATTCTCATTGATGATGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTTTTTTTCTCAGTAGCAGTTTGAATATTCTCATTGATGATGGGA  581

seq1  AAACCTGAGGACATATCAGATCAATATTCAGGTGTTGTTTTGGGAGACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGAGGACATATCAGATCAATATTCAGGTGTTGTTTTGGGAGACTT  631

seq1  AAGCATATTCCCACTGAGGATATTAAAAAGAGGACCCAGAGTTTAGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATATTCCCACTGAGGATATTAAAAAGAGGACCCAGAGTTTAGAAAA  681

seq1  GACACTATATTATTCTCATATAGTATGTACCACATCATAGGGCAATTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTATATTATTCTCATATAGTATGTACCACATCATAGGGCAATTAAT  731

seq1  GGGATTTTTGAAAACCAAAAGGTTTTAAATAAAAATTAAACTATGATTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTTTGAAAACCAAAAGGTTTTAAATAAAAATTAAACTATGATTGT  781

seq1  GAGGATTGACTGTGGTTATGAAAGGAAACTCAGTTAATAAATCGCTCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTGACTGTGGTTATGAAAGGAAACTCAGTTAATAAATCGCTCTTT  831

seq1  GTGTTTTTATGAACATGATTTGATGCAGAAGAAAGAGCAAGTTCTGACTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTTATGAACATGATTTGATGCAGAAGAAAGAGCAAGTTCTGACTG  881

seq1  ATCTCTCAAGCGTAATTTGTTATTTTCAAGATTTCAATTTTTTCTAAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCAAGCGTAATTTGTTATTTTCAAGATTTCAATTTTTTCTAAATA  931

seq1  AAATGCTCAAAACATTTATAGCATCTATTGATGTTAATTCATCCCTGAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTCAAAACATTTATAGCATCTATTGATGTTAATTCATCCCTGAAG  981

seq1  CAATATTACTTGTGAAACCACTGAGAGTTCCCAGAAGTATTACACTGTAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTACTTGTGAAACCACTGAGAGTTCCCAGAAGTATTACACTGTAG  1031

seq1  TTATGAATGTATAAAAGATGTACCTAATTCACAATAAATCATCAAAAGAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAATGTATAAAAGATGTACCTAATTCACAATAAATCATCAAAAGAA  1081

seq1  TTC  1103
      |||
seq2  TTC  1084

seq1: chr13_118285399_118286191
seq2: B6Ng01-065O05.g_76_863

seq1  GAATTCCCCTCTACACCTTGTCTACCTTCCTCTAAGTTTCATTATCTTGC  50
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAATTCCCCTCTACACCTTGTCTACCTTCCTCTAAGTTTC-TTATCTTGC  49

seq1  TTCAATCAATCTCTTTTTCACTGGATACACACACACACACACACACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCAATCTCTTTTTCACTGGATACACACACACACACACACACACAC  99

seq1  ACACACACACACACACACACACTCACACATGCACACACACACACACACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACTCACACATGCACACACACACACACACAC  149

seq1  ACACACACTCACACATGCACACACACACACACACACACACTCACACACAC  200
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACACACACTCACACATGCACACACACACACACACACACACTCTCACACAC  199

seq1  ACACTTGCACACACACACACACAAACACGATTTATATTTTTATACATTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGCACACACACACACACAAACACGATTTATATTTTTATACATTAA  249

seq1  CAAGAGCATTTATTTCAGCAGTGCTGACATTTTGGCTGCTTAGCTGTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCATTTATTTCAGCAGTGCTGACATTTTGGCTGCTTAGCTGTTCC  299

seq1  TAATAGTCACAGAGCCTTGACAATTTCCTGGAATGAAGTGTACTTTCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTCACAGAGCCTTGACAATTTCCTGGAATGAAGTGTACTTTCAAG  349

seq1  CGTTTTGTTGAGTAAAAGAGGCCATGAACTTGAGAGAAAGCAAGGATGGG  400
      ||||||||| ||| ||||||||||||||||||||||||||| ||| ||||
seq2  CGTTTTGTTTAGTTAAAGAGGCCATGAACTTGAGAGAAAGCTAGGTTGGG  399

seq1  TCAGGCTATGGAGAACTTGAATTTAAGAAATCAAAAGGAAAAATGACACA  450
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCAGGCTATGGAGAACTTGAATTTAATAAATCAAAAGGAAAAATGACACA  449

seq1  AGTATATTTTAATTTTTAAAAATGAAAGAAATATACATTTAACATTAGTC  500
      ||| ||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATTTTATTTTTTAAAAATGAAAGAAATATACATTTAACATTAGTC  499

seq1  TATTGAAATAATAATGCAAGCTTATAACAGACAATAAAAATGTATGTTTA  550
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TATTGAAATAATAATGCAATCTTATAACAGACAATAAAAATGTATGTTTA  549

seq1  TATTGAACAGCAGGTCATTCATTGGATAATAATCTGTCTTTATTTCTAAA  600
      |||||||| |||||||||||| ||||||||||||||||||||||||||||
seq2  TATTGAACTGCAGGTCATTCA-TGGATAATAATCTGTCTTTATTTCTAAA  598

seq1  GAAATAAGTGACCTTTCCACTCTTTGTCTCAACAACATATTCAATTTGTC  650
      ||||| ||||||||||||||||||| ||||||||| |||||| | || | 
seq2  GAAATTAGTGACCTTTCCACTCTTT-TCTCAACAATATATTCTAATTTTG  647

seq1  AGATATTTTTGGGAAAGATGTTTTATGAGAAACAGAAAGG-AAATGTTCT  699
      |||||||||||||||||||||||||||||||| |||| || |||||||||
seq2  AGATATTTTTGGGAAAGATGTTTTATGAGAAA-AGAAGGGAAAATGTTCT  696

seq1  TAGTCAATCTTGTATTTGCAAAAATACCTGCTTGAAAATGATACTCCCTC  749
      | ||| ||||| ||||||| | |||||||||||  |||||||||||||||
seq2  TTGTCTATCTTTTATTTGC-ATAATACCTGCTTTGAAATGATACTCCCTC  745

seq1  TGTAAAAATGATGTT-GAAAAGGAGTCATTGTTTGGAAAGGTAAA  793
        |||||||||||||  |||||||||||||| |||||||||||||
seq2  -ATAAAAATGATGTTAAAAAAGGAGTCATTG-TTGGAAAGGTAAA  788