BAC Information

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BAC

Clone NameB6Ng01-066E05
Chromosome13 (Build37)
Map Location 104,555,491 - 104,556,628
singlet/doubletsinglet
Overlap genenone
Upstream geneMast4, EG621312, EG432800, LOC432801, LOC100040045, Ppia-ps13_1282.1, Sfrs12
Downstream geneErbb2ip, LOC100040086, D130037M23Rik, Nln, Sgtb, 2410002O22Rik, LOC100040518, Trim23, Ppwd1, Cenpk, Adamts6, LOC667518, Sdccag10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066E05.bB6Ng01-066E05.g
ACCDH885489DH885490
length1,090865
definitionDH885489|Mus musculus domesticus DNA, BAC clone: B6Ng01-066E05, 5' end.DH885490|Mus musculus domesticus DNA, BAC clone: B6Ng01-066E05, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaagttgtaatctaaaactttagataatagttttagcttatctat
agaaaaaacaaacaaaacagaattacagtttagcggctttggcaaatgca
tactttctaattctacagcatctaaatttaactaatttaaaaaatgaggt
tattacttttaaattctggagaacaaatttcttaacatgcagaatgataa
caaggtaagactttctgaagatataaaataacaatgaactactactatta
ctactcatctacatatacccatatatatgctatttatattagttatcaca
ttcgttttatatactaaacatacagagttctttcttaaggcttaaaacct
gaacacctgccatcccaggtatacactctatgcttcggtaccctaattta
ttcacctgagttacaatctagtaatgtgctaaatttaatattatttgtca
ataaccagacccagctatccattcagtctagagactacacagataataat
attcaacatgaaccaagttcattacttagtactgtgaggcctcagctctg
tcttaagtattagtaggctatcagacccacctcataacaataaactgtta
aaaatcagtaactttaagctcacattatttctgtcttattctactaaaga
tactcttaagaaaaattccattgtactattccaaactctaactctgtaaa
ctgtgtcctctaaagcacccctggagtacagagaagtgtgaaacaagcaa
gcatttagcattttccccaaactacacttcaaaactgaggcagacatctt
tcatactattgtgagtcctcacttcagaatgcacttaaaaagcgagtaag
ttctgaagagttttcacaaagaattcaagcaaacaacaacaaaaaatgca
tgcaataatatgacagttttctcatttcccagagcacaaaggcgtcatac
accatgtataaagataagacctcccctacttcagatgtaaagaatgcact
atttcctgatggtttatatgcctaagttctaggaggaaaaatatagcatc
agttggtttatgaggatgtgactgggaaaatgcctgagcc
gaattcactgtggtagctgaggttggccctgaacttctgattcctctgct
tctgctttcacagtgcttggggttacaggtgtgtactgctaaccactacc
ctggccataagatggattttttattttattttattttattttttctgaga
cagggtttctctgtgtagccctggctgtcctggaactcactctgtagacc
aggctggcctcgaactcagaaatccgcctgcctctgcctcccgagtgctg
ggattaaaggtgtgagccaccactgcctggcataagatggattcttattg
tggagtttagtatatttattaccaagaacttgtacctttttttctgaaaa
ggaaatgtgtgtgtgtgtgtgtatgtgtgtgtgtcttactagcctattta
cattttgagcccattaaataaaatagcactgaaatacctctgccatgtat
ttgatgccctacatggctatgacgtgactgataggaagggtgtgtacacg
gagtggatgcactgcacaaagggatagtgtgccttttccttgagaattgt
tcattctggaactgcctatcaaatacttttagactatggctgactttggg
tgactgaccgtaggctgtgggactggatgaccaggccagctggattttat
atgacgctcacttcccctccccaatccttggtagtctgattactctggat
atacagactcttcccacgcttcttgtgatggctggtgactcatttgaacg
attatctcttgttggaagtgtcatataactgtctgagagacacttgcgga
gaatatctttctaccattcatgacttgatttttctttcttcttttttgtg
aatactttcgttaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_104555491_104556628
seq2: B6Ng01-066E05.b_44_1133

seq1  GAATTCAAGTTGTAATCTAAAACTTTAGATAATAGTTTTAGCTTATCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTTGTAATCTAAAACTTTAGATAATAGTTTTAGCTTATCTAT  50

seq1  AGAAAAAACAAACAAAACAGAATTACAGTTTAGCGGCTTTGGCAAATGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAACAAACAAAACAGAATTACAGTTTAGCGGCTTTGGCAAATGCA  100

seq1  TACTTTCTAATTCTACAGCATCTAAATTTAACTAATTTAAAAAATGAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCTAATTCTACAGCATCTAAATTTAACTAATTTAAAAAATGAGGT  150

seq1  TATTACTTTTAAATTCTGGAGAACAAATTTCTTAACATGCAGAATGATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTTTTAAATTCTGGAGAACAAATTTCTTAACATGCAGAATGATAA  200

seq1  CAAGGTAAGACTTTCTGAAGATATAAAATAACAATGAACTACTACTATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTAAGACTTTCTGAAGATATAAAATAACAATGAACTACTACTATTA  250

seq1  CTACTCATCTACATATACCCATATATATGCTATTTATATTAGTTATCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCATCTACATATACCCATATATATGCTATTTATATTAGTTATCACA  300

seq1  TTCGTTTTATATACTAAACATACAGAGTTCTTTCTTAAGGCTTAAAACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTTTTATATACTAAACATACAGAGTTCTTTCTTAAGGCTTAAAACCT  350

seq1  GAACACCTGCCATCCCAGGTATACACTCTATGCTTCGGTACCCTAATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACCTGCCATCCCAGGTATACACTCTATGCTTCGGTACCCTAATTTA  400

seq1  TTCACCTGAGTTACAATCTAGTAATGTGCTAAATTTAATATTATTTGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTGAGTTACAATCTAGTAATGTGCTAAATTTAATATTATTTGTCA  450

seq1  ATAACCAGACCCAGCTATCCATTCAGTCTAGAGACTACACAGATAATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCAGACCCAGCTATCCATTCAGTCTAGAGACTACACAGATAATAAT  500

seq1  ATTCAACATGAACCAAGTTCATTACTTAGTACTGTGAGGCCTCAGCTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACATGAACCAAGTTCATTACTTAGTACTGTGAGGCCTCAGCTCTG  550

seq1  TCTTAAGTATTAGTAGGCTATCAGACCCACCTCATAACAATAAACTGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGTATTAGTAGGCTATCAGACCCACCTCATAACAATAAACTGTTA  600

seq1  AAAATCAGTAACTTTAAGCTCACATTATTTCTGTCTTATTCTACTAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAGTAACTTTAAGCTCACATTATTTCTGTCTTATTCTACTAAAGA  650

seq1  TACTCTTAAGAAAAATTCCATTGTACTATTCCAAACTCTAACTCTGTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTAAGAAAAATTCCATTGTACTATTCCAAACTCTAACTCTGTAAA  700

seq1  CTGTGTCCTCTAAAGCACCCCTGGAGTACAGAGAAGTGTGAAACAAGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCCTCTAAAGCACCCCTGGAGTACAGAGAAGTGTGAAACAAGCAA  750

seq1  GCATTTAGCATTTTCCCCAAACTACACTTCAAAACTGAGGCAGACATCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTAGCATTTTCCCCAAACTACACTTCAAAACTGAGGCAGACATCTT  800

seq1  TCATACTATTGTGAGTCCTCACTTCAGAATGCACTTAAAAAGCGAGTAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTATTGTGAGTCCTCACTTCAGAATGCACTTAAAAAGCGAGTAAG  850

seq1  TTCTGAAGAGTTTTCAACAAAAGAAATTCAAGCAAACAAACAAACAAAAA  900
      ||||||||||||||| |||||   ||||||||||||| |||||   ||||
seq2  TTCTGAAGAGTTTTC-ACAAA--GAATTCAAGCAAAC-AACAA--CAAAA  894

seq1  AATGCATGCAAATAAATAATGAACAGTTTTCTCCATTTCCCCAGAAGCAA  950
      ||||||||| |||||   ||| |||||||||| ||||| ||||| |||| 
seq2  AATGCATGC-AATAA--TATG-ACAGTTTTCT-CATTT-CCCAG-AGCA-  936

seq1  CAAAAGGCTTCATAACACCATGGTAATAAAAGACAAAGACCTCCCCCTAC  1000
        |||||| |||| ||||||| |||   |||||  ||||||| |||||| 
seq2  -CAAAGGCGTCAT-ACACCAT-GTA--TAAAGA-TAAGACCT-CCCCTA-  978

seq1  CTTCAGATGGTAAAAGAAATGCACTTATTTTCCTTGATGGTTTTATATGC  1050
      |||||||| |||||   ||||||| |||||  | |||||| |||||||||
seq2  CTTCAGAT-GTAAA--GAATGCAC-TATTT--CCTGATGG-TTTATATGC  1021

seq1  CTACAGTTCTAAGGGAAGGACAAAAATTATAAGGCATCAGTTGGTTTTTA  1100
      ||| ||||||      ||||  |||| ||||  |||||||||||  ||||
seq2  CTA-AGTTCT------AGGAGGAAAAATATA--GCATCAGTTGG--TTTA  1060

seq1  TGAGAGATGTAGACTTGGGGAAAAATATGCACTGAGCC  1138
      |||| ||||| ||||  ||||||   |||| |||||||
seq2  TGAG-GATGT-GACT--GGGAAA---ATGC-CTGAGCC  1090