BAC Information

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BAC

Clone NameB6Ng01-066J19
Chromosome13 (Build37)
Map Location 62,234,358 - 62,235,452
singlet/doubletsinglet
Overlap geneEG630579
Upstream geneCtsr, Cts6, Cts8, Cts8-ps, LOC435362, Cts7, Cts7-ps, EG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444
Downstream geneEG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066J19.bB6Ng01-066J19.g
ACCDH885743DH885744
length1,2911,077
definitionDH885743|Mus musculus domesticus DNA, BAC clone: B6Ng01-066J19, 5' end.DH885744|Mus musculus domesticus DNA, BAC clone: B6Ng01-066J19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatagtggagagaaaccctacaaatgtaaccaatgtgatacagcc
tttataaatctcagtcatcttaaaaggcacagaaaattcatcctggagaa
caacgctacaaatgtgatcaatgtggtaaagccttttcacaagactgtaa
tctccaaaaccataaaagaaacatacaggagaaaaaccctacaaatgtaa
tcaacgtgacaaagccttttcccaacattttaatctccggagacataaag
gaatacgtactggatagaaaccatacaaatgtaatctatgtgacaaagcc
tatccccaaccttataatctacaaaatcataaaagtattcgtacaggaaa
gaaaccctacaaatctaataaatgtgagaaagccttttcatgacattatg
atctctgaatacatacaagaatacatacaagaataatacttgagggctgg
agagattgctcagtggttaagagcactgactgctcatccaaaggtcctga
gttcaaatcccagcaaccacatggtggctcacaaccatccataatgagat
atgacacagtcttctggtacatctgaagacagctacattgtacttacata
taataataaataaatcttttttttaaatgctaaatgacctagggcgaact
ctataaaagagagcagccaaaaatgaattagtaaacctcaatgaagtgca
agggctgatcaatgatcattgagtctctctcatcccagtgcaatggatcc
acaaatccgtgggatgcaatagcagagaactcagacgccaattaggtctt
aagcatggacagccaaatttcaggggaggccccttgttcaatggcagcaa
gtgcttgagcaataacgaccttgtcacggttttgttgggttctgagcttg
cagaccaaccagagcatgaacacaagcccacagcagatggcagcagcaaa
taaaactacccccacccattccttaaatatgaaaatgcaaatgaaatcca
ggaggagagaccctctgtcatgacagtcaacttgcatcgagttgatcctt
agaacgccgctttcaaggcctcagggtcttcatcgaattcttcagatcaa
tttctgcaagaatacaaagaaagctgcctagaacagattagctgatgagt
aattttcctatggaacacttgtatgccagagaccattcttttcacagccc
actgggccctgagaagtctatcgttctcacagaatccagggctgatcaaa
ttataggcctctctcttactggtggcagcacagcaaagatg
gaattcatactgtttcctaggctgggtcttctttgggcatcagccagagc
tgaataagtgatctctccctgggaaagatgttaatccacaccagctgtac
ctccaggatttaaataatgtttctgagacaagctttcctaggttgagtca
ggtagcattcattccactctgtatttcccaggacaatgacattggcttct
attgactaaaccaactaaatacttaagtctaaatcactaacaccactgtg
tttttaaattacttgctgagtcatgtatgtaatcaagttttttattacag
taagaggaacaggatttgcatgaagggcatggcttctgcattcacatcag
aagagaagggagtttattgcgatccctactggggaaacagggtaggcaat
cagctgctggagttgccattatgaacaagacctgatcatggcagggaggt
gatttttaattttggatcatgtattaatcatgttctgtgatgaagacagc
ctatattgatgggtgtttgagttgtgaatgtcagttaagccactgagcat
tcaattcgaacgtagggtactgttctacagatacatgtgcaatcttcact
gacatcattaagtcagctcaagaattgaatcccaggccatcgggtgtagt
tgtgtgtgtgtcaagttgtgtgtcaagttacaggtgtcagcaactaagag
tccacatagaggcaagttcaagtagtgtttgattaatgctattcctgatg
tgaggatatgggctgctagttttgaatgtcagtatggcttgtggtttttt
agtatatttaagttggaaaaaatcattattggttcccctttcaatgtaat
ttctatgaattaagcactgctcttgatctctactatttgcattctgttgt
atttcccaggtaaaagatttcttttcatatttacaaggtcagttaggaca
ggtctcttgagcccaggctggctcatgcttgtattgataactgctttgaa
catctggtctgtcttaagacacatgattcaagacatgctgcatgcttcta
gcttatgctttgagggaaagttttcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_62234358_62235452
seq2: B6Ng01-066J19.g_68_1144

seq1  GAATTCATACTGTTTCCTAGGCTGGGTCTTCTTTGGGCATCAGCCAGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACTGTTTCCTAGGCTGGGTCTTCTTTGGGCATCAGCCAGAGC  50

seq1  TGAATAAGTGATCTCTCCCTGGGAAAGATGTTAATCCACACCAGCTGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAGTGATCTCTCCCTGGGAAAGATGTTAATCCACACCAGCTGTAC  100

seq1  CTCCAGGATTTAAATAATGTTTCTGAGACAAGCTTTCCTAGGTTGAGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGATTTAAATAATGTTTCTGAGACAAGCTTTCCTAGGTTGAGTCA  150

seq1  GGTAGCATTCATTCCACTCTGTATTTCCCAGGACAATGACATTGGCTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCATTCATTCCACTCTGTATTTCCCAGGACAATGACATTGGCTTCT  200

seq1  ATTGACTAAACCAACTAAATACTTAAGTCTAAATCACTAACACCACTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTAAACCAACTAAATACTTAAGTCTAAATCACTAACACCACTGTG  250

seq1  TTTTTAAATTACTTGCTGAGTCATGTATGTAATCAAGTTTTTTATTACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAATTACTTGCTGAGTCATGTATGTAATCAAGTTTTTTATTACAG  300

seq1  TAAGAGGAACAGGATTTGCATGAAGGGCATGGCTTCTGCATTCACATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGAACAGGATTTGCATGAAGGGCATGGCTTCTGCATTCACATCAG  350

seq1  AAGAGAAGGGAGTTTATTGCGATCCCTACTGGGGAAACAGGGTAGGCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGGGAGTTTATTGCGATCCCTACTGGGGAAACAGGGTAGGCAAT  400

seq1  CAGCTGCTGGAGTTGCCATTATGAACAAGACCTGATCATGGCAGGGAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCTGGAGTTGCCATTATGAACAAGACCTGATCATGGCAGGGAGGT  450

seq1  GATTTTTAATTTTGGATCATGTATTAATCATGTTCTGTGATGAAGACAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTAATTTTGGATCATGTATTAATCATGTTCTGTGATGAAGACAGC  500

seq1  CTATATTGATGGGTGTTTGAGTTGTGAATGTCAGTTAAGCCACTGAGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTGATGGGTGTTTGAGTTGTGAATGTCAGTTAAGCCACTGAGCAT  550

seq1  TCAATTCGAACGTAGGGTACTGTTCTACAGATACATGTGCAATCTTCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCGAACGTAGGGTACTGTTCTACAGATACATGTGCAATCTTCACT  600

seq1  GACATCATTAAGTCAGCTCAAGAATTGAATCCCAGGCCATCGGGTGTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCATTAAGTCAGCTCAAGAATTGAATCCCAGGCCATCGGGTGTAGT  650

seq1  TGTGTGTGTGTCAAGTTGTGTGTCAAGTTACAGGTGTCAGCAACTAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTCAAGTTGTGTGTCAAGTTACAGGTGTCAGCAACTAAGAG  700

seq1  TCCACATAGAGGCAAGTTCAAGTAGTGTTTGATTAATGCTATTCCTGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATAGAGGCAAGTTCAAGTAGTGTTTGATTAATGCTATTCCTGATG  750

seq1  TGAGGATATGGGCTGCTAGTTTTGAATGTCAGTATGGCTTGTGGTTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATATGGGCTGCTAGTTTTGAATGTCAGTATGGCTTGTGGTTTTTT  800

seq1  AGTAATATTTAAGTTGGAAAAAATCAATTATTGGTTCCCCTTTCAATGTA  850
      ||| ||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGT-ATATTTAAGTTGGAAAAAATC-ATTATTGGTTCCCCTTTCAATGTA  848

seq1  ATTTCTATGAATTAAGCACTGCTC-TGATCTCTTACTATTTGCAATTCTG  899
      |||||||||||||||||||||||| ||||||| |||||||||| ||||||
seq2  ATTTCTATGAATTAAGCACTGCTCTTGATCTC-TACTATTTGC-ATTCTG  896

seq1  TTGTATTTCCCAGGTATAAGAATTTCTTTTCATATTTTACAAGGTCAGTT  949
      |||||||||||||||| ||| ||||||||||||| ||||||||||||| |
seq2  TTGTATTTCCCAGGTAAAAG-ATTTCTTTTCATA-TTTACAAGGTCAG-T  943

seq1  TAGGACAAGGTCTCTTGATGCCCAGGCTGGCTCATGCTATGTAATTGATA  999
      |||||| ||||||||||| ||||||||||||||||||| ||| |||||||
seq2  TAGGAC-AGGTCTCTTGA-GCCCAGGCTGGCTCATGCT-TGT-ATTGATA  989

seq1  ACTGCTTTGAACATCTGGTCCTGTCCCTAAGACCACATGATTCAAAGACA  1049
      ||||||||||||||||||| |||| | ||||| |||||||||| ||||||
seq2  ACTGCTTTGAACATCTGGT-CTGT-CTTAAGA-CACATGATTC-AAGACA  1035

seq1  GTGCTGCATGTCTTCTAGCCTAGGCTTTGAAGGGGAAAGTTTTCCT  1095
       ||||||||| |||||||| || |||||||  ||||||||||||||
seq2  -TGCTGCATG-CTTCTAGCTTATGCTTTGA--GGGAAAGTTTTCCT  1077