BAC Information

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BAC

Clone NameB6Ng01-067M04
Chromosome13 (Build37)
Map Location 53,379,944 - 53,539,877
singlet/doubletdoublet
Overlap geneRor2, Sptlc1, LOC100040421
Upstream geneLOC100040321, Diras2, LOC100040572, Syk, Auh, Nfil3
Downstream geneMsx2, EG432760, E130119H09Rik, Drd1a, Sfxn1, Hrh2, LOC100040535, Cplx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067M04.bB6Ng01-067M04.g
ACCDH886546DH886547
length1,0991,058
definitionDH886546|Mus musculus domesticus DNA, BAC clone: B6Ng01-067M04, 5' end.DH886547|Mus musculus domesticus DNA, BAC clone: B6Ng01-067M04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,538,758 - 53,539,877)(53,379,944 - 53,381,013)
sequence
gaattcctgagagttcaaaaccagtgtaagttacgcaggaagtctctggc
cagcttgggatttaattattactgttgttgttttaaagatgcttgcctct
tcttggtattaagtgttaaacttgacaagtctttctgtcttggccacttc
ttattacaaaccaaaccactatgtctatagcagggctttcgtttgatgtc
tgttgagaaagcagagctcttaaaacaactaaaagcaaggacagggatag
ataggaaatagaaatcaaagctgaatctgtccaggccacatggggccagg
agacaggcacctgagtgcttctccccccactctcccacccctctgctgag
cactccagtcacagcctcttagcctttctcaaggaggaggaaacgcagag
gctaagggagccctcagtgcttgtactgatcatttgcataaggcaactag
ggtgagtgggcagtctaactagaatccctgctagcccctttccaggactg
tgacaggcctcctcagaagttgccctggctgaaaggagctgactatctct
cagaactggttctcttgggggacagccaacctgaggtgatgtaatagaag
caggatgcaacgtctggaccccttctgtttggctgagacatccctggcaa
gccttctgcttagggtaacacacatcacagctcagcatggccctctgtgt
gttctgttccccagtgactcactcaagccccgccccccatctccaaaagt
tattcccactaagccacctagtgggaggtctgcttgctacagcgatacag
aataaaaattatgaggctttttctcacattgagtacttaatgttgaattg
aatacttaatgaaaatgttagagcacttttgttttcatctcatataaaga
ttatgcaaatacaaactagtgggaaacaccaataaagtacaaacccattc
ttctatatatatttatttatttataaagttgtttatttgtattatttata
gaagaattgctagctgcagaatgcacctttttctgttttttatttattta
tttttgtcctggatttttaatcattatattttttaagattattattatt
gaattcttgcggggcgggcagtttggtaatgacattaatttaagatacag
ggcactctcattctgcaatcagcggttcctgctttcggggataggtgtat
caatgcaaatcaagagatcagaaacggtaaataccatcagcatcggttta
aacccaaacgccctcctggaaggttgctcagcatttccttccttctttgg
acccgacacaagaaagcgcccccgcacagcaggacttggaaagatcccca
agtcctgctgcctgactctgccccttaactctcacctgcttgcgggaaca
ctggggggctggggaacactgaagtcactgtcccagtagggcgcgtctca
cgcagctcagaaacttagggcaaacctcaagagtccctgaccctcctggg
cccggaggccgtgcctaccttcagccgagccaacaggccgcggggattcg
ggccacagacctgacggccagtaggtgctctagggtttgcactgggagga
tcatcgcctcttcctcctccggccaccacagtcatttctacccaggtatc
ctccaaaaacacgtctgtgctccttgacagggtctcctgagccctgatca
agcccacacagaatcctccagaggtggaagaaacgctcgagaaaacacta
cgaggacagggggaagggcacttccccttcagcctcgcaaatcaaatccc
ggggccaagcccccagctaagcaggacccaccaaacaccactttggccac
caatttcaacaaaagggaagccaagaccttcgatcgtgcgttccccactg
ccccggggaaaaaaaagactaactcaggaccgcatctgccccggaggcag
acaaggttcaagggatgcatgtggactggaacggcggtgacctgggaaga
aacgatggagtccaggtcttgggtcacacagagcacgtctaccggtgcac
atctcgactgtgatgtcttagaaaagctcccggccgctgccacctcggct
ctgaacacttagtggtcctagagcgcactcattgtacagcccaagcgact
gaggcacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_53538758_53539877
seq2: B6Ng01-067M04.b_49_1147 (reverse)

seq1  AATAATAAATAAATCTTTAAAAAAATATTAAATGATTAAAAAAATCACAG  50
      ||||||||   ||||||  |||||||||  |||||||  ||||||| |||
seq2  AATAATAA--TAATCTT--AAAAAATAT--AATGATT--AAAAATC-CAG  41

seq1  GACCAAAAAATAAAATAAAATAAAAAAACAGAAAAAGGTGCTATCTGCCA  100
      |||  |||||| |||||||   |||||||||||||||||||  |||||  
seq2  GAC--AAAAAT-AAATAAA--TAAAAAACAGAAAAAGGTGCATTCTGC--  84

seq1  AGCTAGCAATTCTTCTATAAATAATACAAATTAAACAACTTTATAAAATA  150
      |||||||||||||||||||||||||||||| ||||||||||||| |||||
seq2  AGCTAGCAATTCTTCTATAAATAATACAAA-TAAACAACTTTAT-AAATA  132

seq1  AATAAATAATATATAGAAGAATGGGTTTTGTTACTTTATTGGTGTTTCCC  200
      ||||||| ||||||||||||||||||||   |||||||||||||||||||
seq2  AATAAAT-ATATATAGAAGAATGGGTTT--GTACTTTATTGGTGTTTCCC  179

seq1  ACTAGTTTGTATTTTGCATAATCTTTATATGAGATGAAAACAAAAGTGCT  250
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTTGTA-TTTGCATAATCTTTATATGAGATGAAAACAAAAGTGCT  228

seq1  CTAACATTTTCATTAAGTATTCAATTCAACATTAAGTACTCAATGTGAG-  299
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTAACATTTTCATTAAGTATTCAATTCAACATTAAGTACTCAATGTGAGA  278

seq1  AAAAGCCTCATAATTTTTATTCTGTATCGCTGTAGCAAGCAGACCTCCCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCTCATAATTTTTATTCTGTATCGCTGTAGCAAGCAGACCTCCCA  328

seq1  CTAGGTGGCTTAGTGGGAATAACTTTTGGAGATGGGGGGCGGGGCTTGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTGGCTTAGTGGGAATAACTTTTGGAGATGGGGGGCGGGGCTTGAG  378

seq1  TGAGTCACTGGGGAACAGAACACACAGAGGGCCATGCTGAGCTGTGATGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCACTGGGGAACAGAACACACAGAGGGCCATGCTGAGCTGTGATGT  428

seq1  GTGTTACCCTAAGCAGAAGGCTTGCCAGGGATGTCTCAGCCAAACAGAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTACCCTAAGCAGAAGGCTTGCCAGGGATGTCTCAGCCAAACAGAAG  478

seq1  GGGTCCAGACGTTGCATCCTGCTTCTATTACATCACCTCAGGTTGGCTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCAGACGTTGCATCCTGCTTCTATTACATCACCTCAGGTTGGCTGT  528

seq1  CCCCCAAGAGAACCAGTTCTGAGAGATAGTCAGCTCCTTTCAGCCAGGGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAAGAGAACCAGTTCTGAGAGATAGTCAGCTCCTTTCAGCCAGGGC  578

seq1  AACTTCTGAGGAGGCCTGTCACAGTCCTGGAAAGGGGCTAGCAGGGATTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTGAGGAGGCCTGTCACAGTCCTGGAAAGGGGCTAGCAGGGATTC  628

seq1  TAGTTAGACTGCCCACTCACCCTAGTTGCCTTATGCAAATGATCAGTACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAGACTGCCCACTCACCCTAGTTGCCTTATGCAAATGATCAGTACA  678

seq1  AGCACTGAGGGCTCCCTTAGCCTCTGCGTTTCCTCCTCCTTGAGAAAGGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGAGGGCTCCCTTAGCCTCTGCGTTTCCTCCTCCTTGAGAAAGGC  728

seq1  TAAGAGGCTGTGACTGGAGTGCTCAGCAGAGGGGTGGGAGAGTGGGGGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGCTGTGACTGGAGTGCTCAGCAGAGGGGTGGGAGAGTGGGGGGA  778

seq1  GAAGCACTCAGGTGCCTGTCTCCTGGCCCCATGTGGCCTGGACAGATTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACTCAGGTGCCTGTCTCCTGGCCCCATGTGGCCTGGACAGATTCA  828

seq1  GCTTTGATTTCTATTTCCTATCTATCCCTGTCCTTGCTTTTAGTTGTTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGATTTCTATTTCCTATCTATCCCTGTCCTTGCTTTTAGTTGTTTT  878

seq1  AAGAGCTCTGCTTTCTCAACAGACATCAAACGAAAGCCCTGCTATAGACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTCTGCTTTCTCAACAGACATCAAACGAAAGCCCTGCTATAGACA  928

seq1  TAGTGGTTTGGTTTGTAATAAGAAGTGGCCAAGACAGAAAGACTTGTCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGTTTGGTTTGTAATAAGAAGTGGCCAAGACAGAAAGACTTGTCAA  978

seq1  GTTTAACACTTAATACCAAGAAGAGGCAAGCATCTTTAAAACAACAACAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAACACTTAATACCAAGAAGAGGCAAGCATCTTTAAAACAACAACAG  1028

seq1  TAATAATTAAATCCCAAGCTGGCCAGAGACTTCCTGCGTAACTTACACTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTAAATCCCAAGCTGGCCAGAGACTTCCTGCGTAACTTACACTG  1078

seq1  GTTTTGAACTCTCAGGAATTC  1120
      |||||||||||||||||||||
seq2  GTTTTGAACTCTCAGGAATTC  1099

seq1: chr13_53379944_53381013
seq2: B6Ng01-067M04.g_67_1124

seq1  GAATTCTTGCGGGGCGGGCAGTTTGGTAATGACATTAATTTAAGATACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCGGGGCGGGCAGTTTGGTAATGACATTAATTTAAGATACAG  50

seq1  GGCACTCTCATTCTGCAATCAGCGGTTCCTGCTTTCGGGGATAGGTGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTCTCATTCTGCAATCAGCGGTTCCTGCTTTCGGGGATAGGTGTAT  100

seq1  CAATGCAAATCAAGAGATCAGAAACGGTAAATACCATCAGCATCGGTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCAAATCAAGAGATCAGAAACGGTAAATACCATCAGCATCGGTTTA  150

seq1  AACCCAAACGCCCTCCTGGAAGGTTGCTCAGCATTTCCTTCCTTCTTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAAACGCCCTCCTGGAAGGTTGCTCAGCATTTCCTTCCTTCTTTGG  200

seq1  ACCCGACACAAGAAAGCGCCCCCGCACAGCAGGACTTGGAAAGATCCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGACACAAGAAAGCGCCCCCGCACAGCAGGACTTGGAAAGATCCCCA  250

seq1  AGTCCTGCTGCCTGACTCTGCCCCTTAACTCTCACCTGCTTGCGGGAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGCTGCCTGACTCTGCCCCTTAACTCTCACCTGCTTGCGGGAACA  300

seq1  CTGGGGGGCTGGGGAACACTGAAGTCACTGTCCCAGTAGGGCGCGTCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGGCTGGGGAACACTGAAGTCACTGTCCCAGTAGGGCGCGTCTCA  350

seq1  CGCAGCTCAGAAACTTAGGGCAAACCTCAAGAGTCCCTGACCCTCCTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCTCAGAAACTTAGGGCAAACCTCAAGAGTCCCTGACCCTCCTGGG  400

seq1  CCCGGAGGCCGTGCCTACCTTCAGCCGAGCCAACAGGCCGCGGGGATTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGAGGCCGTGCCTACCTTCAGCCGAGCCAACAGGCCGCGGGGATTCG  450

seq1  GGCCACAGACCTGACGGCCAGTAGGTGCTCTAGGGTTTGCACTGGGAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACAGACCTGACGGCCAGTAGGTGCTCTAGGGTTTGCACTGGGAGGA  500

seq1  TCATCGCCTCTTCCTCCTCCGGCCACCACAGTCATTTCTACCCAGGTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCGCCTCTTCCTCCTCCGGCCACCACAGTCATTTCTACCCAGGTATC  550

seq1  CTCCAAAAACACGTCTGTGCTCCTTGACAGGGTCTCCTGAGCCCTGATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAAACACGTCTGTGCTCCTTGACAGGGTCTCCTGAGCCCTGATCA  600

seq1  AGCCCACACAGAATCCTCCAGAGGTGGAAGAAACGCTCGAGAAAACACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCACACAGAATCCTCCAGAGGTGGAAGAAACGCTCGAGAAAACACTA  650

seq1  CGAGGACAGGGGGAAGGGCACTTCCCCTTCAGCCTCGCAAATCAAATCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGACAGGGGGAAGGGCACTTCCCCTTCAGCCTCGCAAATCAAATCCC  700

seq1  GGGGCCAAGCCCCCAGCTAAGCAGGACCCACCAAACACCACTTTGGCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCAAGCCCCCAGCTAAGCAGGACCCACCAAACACCACTTTGGCCAC  750

seq1  CAATTTCAACAAAAGGGAAGCCAAGACCTTCGATCGTGCGTTCCCCACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCAACAAAAGGGAAGCCAAGACCTTCGATCGTGCGTTCCCCACTG  800

seq1  CCCCGGGGAAAAAAAAGACTAACTCAGGACCGCATCTGCCCCGGAGGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGGGGAAAAAAAAGACTAACTCAGGACCGCATCTGCCCCGGAGGCAG  850

seq1  ACAAGGTTCAAGGGATGCATGTGGACTGGAACGGCGGTGACCTGGGAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGTTCAAGGGATGCATGTGGACTGGAACGGCGGTGACCTGGGAAGA  900

seq1  AACGATGGAGTCCAGGTCTTGGGTCACACAGAGCACGTCTACCGGTGCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGATGGAGTCCAGGTCTTGGGTCACACAGAGCACGTCTACCGGTGCAC  950

seq1  ATCTCGACTGTGATGTACTTAAGAAAAGCTCCCGGCCGCTGCCCACCCCG  1000
      |||||||||||||||| ||| |||||||||||||||||||| ||||| ||
seq2  ATCTCGACTGTGATGT-CTT-AGAAAAGCTCCCGGCCGCTG-CCACCTCG  997

seq1  GCCTCTGGAAACACTTAGTGGTCCCTAGAGCGCAGCTCATTGGAACCAGC  1050
      | |||||  ||||||||||||| ||||||||||| ||||||| |  ||| 
seq2  G-CTCTG--AACACTTAGTGGT-CCTAGAGCGCA-CTCATTGTA--CAG-  1039

seq1  CCCAGGCGACTGAGGGCACG  1070
      |||| |||||||| ||||||
seq2  CCCAAGCGACTGA-GGCACG  1058