BAC Information

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BAC

Clone NameB6Ng01-068B01
Chromosome13 (Build37)
Map Location 113,525,828 - 113,642,088
singlet/doubletdoublet
Overlap genePpap2a, LOC100041282
Upstream geneMap3k1, LOC668181, LOC100040716, LOC100041161, LOC100041175, Ankrd55, LOC100040725, Il6st, Il31ra, LOC100041240, Ddx4, 9130023D20Rik
Downstream geneSkiv2l2, Dhx29, LOC667756, Ccnu, EG622408, EG622422, 2310016C16Rik, Cdc20b, Gzma, 1700084D21Rik, Gzmk, Esm1, BC067074, LOC100040888, Snag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068B01.bB6Ng01-068B01.g
ACCDH886766DH886767
length1,247867
definitionDH886766|Mus musculus domesticus DNA, BAC clone: B6Ng01-068B01, 5' end.DH886767|Mus musculus domesticus DNA, BAC clone: B6Ng01-068B01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,640,814 - 113,642,088)(113,525,828 - 113,526,694)
sequence
gaattctttactagtcagatactgtgatgattttaatgatatttccaagt
taattaaatgttaatttaacattaactctaaagttgacaaggtaaagttg
acaaaaaaaaattagcacaaaatatacatagaccaatttaggctcaaatt
acatatttttactcttttgaccttatttaaaatagctccataaaataagc
cttccattaaagtttttttaaaatcctgagggatatacattcaatcatta
ataataaactaccatcgcaagagtaaaaaggcgcatgttcaaaagttata
aacttggaaaagcaggtttgacttacaacgataatacagaatggaatgac
tattccacctaataaggcataaggtatggtgtcttccttgtaagggtact
tgatggagtcatcattacagaatattcctcgctggaagggggtatgcctt
gaagtaagaattgcaaaaggcaatccagctagcaaaagggaataaataaa
aatatcattaaaaattatcgaaactgatcaatggcaacaaccatcccgaa
aagactttagagatgcgattgctttgaacgtcagtcagagcacatgtaaa
agggaatgcggaatgcatgcagcggaagttagaaggatcgcagtgtaggg
taaatgtgctttcttctacaggaaacaaagcttcgagactccgtcagcca
ctctaacacaggcatcttccaacctttgttcccacccaaatacagcaatt
gtgggaagtcgcttctcacacttgtctttaactgccaagtttccagcact
ttcttaaccttctgtcacggactttgtttctgaagaaaacattttaacat
tccccattttatactttttcaaaaaacgacaatatttagacaggccacag
tcacagctaggttatgacagtgcctaaagaaagtgttcatttgtttcttt
ccattattcagaggacactagagcagccttggaatggaccctgaagttga
atcaacttcaaagacagcagtgatgtcaagcctaaagcctcctaacacac
acgtgctgtgtcataatgtttcctgtaaaggttgtgtcccacctcaccct
aatgttaaactttgtctaaataaattccagatccagcttttcagtcaata
aatagtaatctatcagtacagctttcggctttaactagaatgattcggaa
cgcaagttcacactcgaactggtcgaactgaaggctctcccatttgg
gaattctctgagatgttatttgtctttttataggaaaaaaaaagagaaat
cagaattattttgaagaaaaatatctctgggattttgctagtggactttg
gcgaggaaatcttgcctcctaacactggcgctggcggaagcggctgagtc
ccatcctttgcaggactgaatttcttaagtgactgtggctgtgtcccatg
tcaggctgtcaggggccttcttgaatgtcctgatcttctggaaaggtata
tgtcacgttaacggggacctaaggagcccatccccatcagccagtgtgtg
ctctccctctaagaacatttttcgtggctgtggcacgttagataagcgtt
gcccagtttctggccaaaagccctggaaaagtcataactttccagagcct
tcagcgctaataaagaacactaattttctggcttctttaagtaaaattac
tcttttccccaccgaatatcatttttcttcttgatttcccaactgttctg
aaaaggtaaagtaagactgttttaaaagtttaagatgacacggtgtttat
cacagactctgccttgcggttcccaagcagggatgagctgcgctgttctg
acacctccccacccccactcagtccccatcagtccagtaatattcagtca
tagcaggcctcaggatccgattgttggattaagtagtcgagattccactt
aaatagaaagtattagatgctattctattatctaggattttcttacatac
tcctcccccaaagtaatgtcgggctagaggtgtagctgaggggtacagca
tttgcctcagaagtatgaggtcccagattaatccccagtattccctgggc
gggggggggggtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_113640814_113642088
seq2: B6Ng01-068B01.b_47_1293 (reverse)

seq1  CCAAA-GGGAGAGCCTTCAGACTCGGGCCAGTCTTGAAGTG-GATGTTGG  48
      ||||| ||||||||||||||  |  | ||||  ||  |||| ||  ||| 
seq2  CCAAATGGGAGAGCCTTCAG--TTCGACCAG--TTCGAGTGTGAACTTGC  46

seq1  GTTTCTGCAGAACTACATCTCTAGTTATAAAGCAGAAAGCTGTAACTGAT  98
      |||    | |||   ||| ||||||  |||||| ||||||||| ||||||
seq2  GTT----CCGAA--TCAT-TCTAGT--TAAAGCCGAAAGCTGT-ACTGAT  86

seq1  AGATGTAACTATTTAATGACATGAAGAGCTGAATTCTCGAAATTTATATT  148
      |||  | |||||||| |||| |||| ||||| | ||| |||   | ||||
seq2  AGA--TTACTATTTATTGAC-TGAAAAGCTGGA-TCTGGAA---TTTATT  129

seq1  TAGACAAAGTTTAAACATTTTAAGGGGTGAGTGTGGGACACAACCTTTAC  198
      |||||||||||| ||||||     ||||||| ||||||||||||||||||
seq2  TAGACAAAGTTT-AACATT----AGGGTGAG-GTGGGACACAACCTTTAC  173

seq1  AGGAAACATTAATGACACAGCACGTGTGTGTTAGGAGGCTTTAGGCTTGA  248
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACATT-ATGACACAGCACGTGTGTGTTAGGAGGCTTTAGGCTTGA  222

seq1  CATCACTGGCTGTCTTTGAAAGTTGATTCAACTTCAGGGTCCATTCCAAG  298
      ||||||| |||||||||| |||||||||||||||||||||||||||||||
seq2  CATCACT-GCTGTCTTTG-AAGTTGATTCAACTTCAGGGTCCATTCCAAG  270

seq1  GCTGCTCTAGTGTCCTCTGAATAATGGAAAGAAACAAATGAACACTTTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTCTAGTGTCCTCTGAATAATGGAAAGAAACAAATGAACACTTTCT  320

seq1  TTAGGCACTGTCATAACCTAGCTGTGACTGTGGCCTGTCTAAATATTGTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCACTGTCATAACCTAGCTGTGACTGTGGCCTGTCTAAATATTGTC  370

seq1  GTTTTTTGAAAAAGTATAAAATGGGGAATGTTAAAATGTTTTCTTCAGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGAAAAAGTATAAAATGGGGAATGTTAAAATGTTTTCTTCAGAA  420

seq1  ACAAAGTCCGTGACAGAAGGTTAAGAAAGTGCTGGAAACTTGGCAGTTAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTCCGTGACAGAAGGTTAAGAAAGTGCTGGAAACTTGGCAGTTAA  470

seq1  AGACAAGTGTGAGAAGCGACTTCCCACAATTGCTGTATTTGGGTGGGAAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGTGTGAGAAGCGACTTCCCACAATTGCTGTATTTGGGTGGGAAC  520

seq1  AAAGGTTGGAAGATGCCTGTGTTAGAGTGGCTGACGGAGTCTCGAAGCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTGGAAGATGCCTGTGTTAGAGTGGCTGACGGAGTCTCGAAGCTT  570

seq1  TGTTTCCTGTAGAAGAAAGCACATTTACCCTACACTGCGATCCTTCTAAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCTGTAGAAGAAAGCACATTTACCCTACACTGCGATCCTTCTAAC  620

seq1  TTCCGCTGCATGCATTCCGCATTCCCTTTTACATGTGCTCTGACTGACGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGCTGCATGCATTCCGCATTCCCTTTTACATGTGCTCTGACTGACGT  670

seq1  TCAAAGCAATCGCATCTCTAAAGTCTTTTCGGGATGGTTGTTGCCATTGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCAATCGCATCTCTAAAGTCTTTTCGGGATGGTTGTTGCCATTGA  720

seq1  TCAGTTTCGATAATTTTTAATGATATTTTTATTTATTCCCTTTTGCTAGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTCGATAATTTTTAATGATATTTTTATTTATTCCCTTTTGCTAGC  770

seq1  TGGATTGCCTTTTGCAATTCTTACTTCAAGGCATACCCCCTTCCAGCGAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTGCCTTTTGCAATTCTTACTTCAAGGCATACCCCCTTCCAGCGAG  820

seq1  GAATATTCTGTAATGATGACTCCATCAAGTACCCTTACAAGGAAGACACC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTCTGTAATGATGACTCCATCAAGTACCCTTACAAGGAAGACACC  870

seq1  ATACCTTATGCCTTATTAGGTGGAATAGTCATTCCATTCTGTATTATCGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTATGCCTTATTAGGTGGAATAGTCATTCCATTCTGTATTATCGT  920

seq1  TGTAAGTCAAACCTGCTTTTCCAAGTTTATAACTTTTGAACATGCGCCTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTCAAACCTGCTTTTCCAAGTTTATAACTTTTGAACATGCGCCTT  970

seq1  TTTACTCTTGCGATGGTAGTTTATTATTAATGATTGAATGTATATCCCTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCTTGCGATGGTAGTTTATTATTAATGATTGAATGTATATCCCTC  1020

seq1  AGGATTTTAAAAAAACTTTAATGGAAGGCTTATTTTATGGAGCTATTTTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTTAAAAAAACTTTAATGGAAGGCTTATTTTATGGAGCTATTTTA  1070

seq1  AATAAGGTCAAAAGAGTAAAAATATGTAATTTGAGCCTAAATTGGTCTAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGTCAAAAGAGTAAAAATATGTAATTTGAGCCTAAATTGGTCTAT  1120

seq1  GTATATTTTGTGCTAATTTTTTTTTGTCAACTTTACCTTGTCAACTTTAG  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTTTGTGCTAATTTTTTTTTGTCAACTTTACCTTGTCAACTTTAG  1170

seq1  AGTTAATGTTAAATTAACATTTAATTAACTTGGAAATATCATTAAAATCA  1248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATGTTAAATTAACATTTAATTAACTTGGAAATATCATTAAAATCA  1220

seq1  TCACAGTATCTGACTAGTAAAGAATTC  1275
      |||||||||||||||||||||||||||
seq2  TCACAGTATCTGACTAGTAAAGAATTC  1247

seq1: chr13_113525828_113526694
seq2: B6Ng01-068B01.g_68_934

seq1  GAATTCTCTGAGATGTTATTTGTCTTTTTATAGGAAAAAAAAAGAGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAGATGTTATTTGTCTTTTTATAGGAAAAAAAAAGAGAAAT  50

seq1  CAGAATTATTTTGAAGAAAAATATCTCTGGGATTTTGCTAGTGGACTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTATTTTGAAGAAAAATATCTCTGGGATTTTGCTAGTGGACTTTG  100

seq1  GCGAGGAAATCTTGCCTCCTAACACTGGCGCTGGCGGAAGCGGCTGAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGGAAATCTTGCCTCCTAACACTGGCGCTGGCGGAAGCGGCTGAGTC  150

seq1  CCATCCTTTGCAGGACTGAATTTCTTAAGTGACTGTGGCTGTGTCCCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTTTGCAGGACTGAATTTCTTAAGTGACTGTGGCTGTGTCCCATG  200

seq1  TCAGGCTGTCAGGGGCCTTCTTGAATGTCCTGATCTTCTGGAAAGGTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTGTCAGGGGCCTTCTTGAATGTCCTGATCTTCTGGAAAGGTATA  250

seq1  TGTCACGTTAACGGGGACCTAAGGAGCCCATCCCCATCAGCCAGTGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACGTTAACGGGGACCTAAGGAGCCCATCCCCATCAGCCAGTGTGTG  300

seq1  CTCTCCCTCTAAGAACATTTTTCGTGGCTGTGGCACGTTAGATAAGCGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCTCTAAGAACATTTTTCGTGGCTGTGGCACGTTAGATAAGCGTT  350

seq1  GCCCAGTTTCTGGCCAAAAGCCCTGGAAAAGTCATAACTTTCCAGAGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTTTCTGGCCAAAAGCCCTGGAAAAGTCATAACTTTCCAGAGCCT  400

seq1  TCAGCGCTAATAAAGAACACTAATTTTCTGGCTTCTTTAAGTAAAATTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCGCTAATAAAGAACACTAATTTTCTGGCTTCTTTAAGTAAAATTAC  450

seq1  TCTTTTCCCCACCGAATATCATTTTTCTTCTTGATTTCCCAACTGTTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCCCACCGAATATCATTTTTCTTCTTGATTTCCCAACTGTTCTG  500

seq1  AAAAGGTAAAGTAAGACTGTTTTAAAAGTTTAAGATGACACGGTGTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTAAAGTAAGACTGTTTTAAAAGTTTAAGATGACACGGTGTTTAT  550

seq1  CACAGACTCTGCCTTGCGGTTCCCAAGCAGGGATGAGCTGCGCTGTTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACTCTGCCTTGCGGTTCCCAAGCAGGGATGAGCTGCGCTGTTCTG  600

seq1  ACACCTCCCCACCCCCACTCAGTCCCCATCAGTCCAGTAATATTCAGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCCCCACCCCCACTCAGTCCCCATCAGTCCAGTAATATTCAGTCA  650

seq1  TAGCAGGCCTCAGGATCCGATTGTTGGATTAAGTAGTCGAGATTCCACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGCCTCAGGATCCGATTGTTGGATTAAGTAGTCGAGATTCCACTT  700

seq1  AAATAGAAAGTATTAGATGCTATTCTATTATCTAGGATTTTCTTACATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAAAGTATTAGATGCTATTCTATTATCTAGGATTTTCTTACATAC  750

seq1  TCCTCCCCCAAAGTAATGTCGGGCTAGAGGTGTAGCTGAGGGGTACAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCCCAAAGTAATGTCGGGCTAGAGGTGTAGCTGAGGGGTACAGCA  800

seq1  TTTGCCTCAGAAGTATGAGGTCCCAGATTTAATCCCCAGTATTCCCTGGG  850
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTGCCTCAGAAGTATGAGGTCCCAGA-TTAATCCCCAGTATTCCCTGGG  849

seq1  C-GGGGGGGGGGTGGGGG  867
      | ||||||||||||||||
seq2  CGGGGGGGGGGGTGGGGG  867