BAC Information

Click to search

BAC

Clone NameB6Ng01-068G23
Chromosome13 (Build37)
Map Location 118,018,128 - 118,019,257
singlet/doubletsinglet
Overlap geneEmb
Upstream geneIsl1, EG668276, Gm280, LOC100041169, Parp8, LOC668288, LOC623312
Downstream geneEG623365, LOC382807, Hcn1, LOC100041695, LOC674926
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068G23.bB6Ng01-068G23.g
ACCDH887023DH887024
length1,2101,110
definitionDH887023|Mus musculus domesticus DNA, BAC clone: B6Ng01-068G23, 5' end.DH887024|Mus musculus domesticus DNA, BAC clone: B6Ng01-068G23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatgtgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgatggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaatcctcgatcttacagcacaagccatggctgtt
ctgttcaggaattattcccctgtgtccatatcttcaaggcttttccctac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttta
tccacttagatttgaccttagtacaaggagataagtatggatcgattccc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaact
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcttttatcatgaatgggtg
ttggatcttgtcaaatgctttttctgcatctaacgagatgatcatgtggt
ttttgtctttgagtttgtttatataatggattacattgatggattttcgt
atattaaaccatccctgcatccctggaataaaacctacttggtcaggatg
gatgattgctttaatgtgttcttggattcggttagcgagaattttattga
gtatttttgcatcgatattcataagagaaattgatctgaagttctctatc
tttgttgggtctttctgtggttaggtatcagggtaatagtggcttaaaaa
atgagttgggtagagtaccttctacttctatttgtgaattagtttgtgag
aactggaaatagatctcttgaaggtctgatagaacttctgcactaaaccc
gtctggtctgggcttttttgggctgggagactatataacctgcttctatt
tcttaggtgatatgggactgtttagatgtgcacttgatcctgattccact
tggtacctggaatctgtacagagttgacgttcactcaaggcattccagtt
tgtgagtatacttgagaaagaatctatgggttgagatactccgagaagtc
gtggtgttag
gaattcatttccttacttaagaaaaaaaaaatcgctgcgccgccgccatg
gccgacgtggaggacggcgaggaaccctgcgtcctttcttcgcactccgg
gagcgcaggctccaagtcgggaggcgacaagatgttctctctcaagaagt
gtaacgcggtagccatgtggagctgggacgttgagtgcgatacctgtgcc
atctgcagggtccaggtgatggatgcctgccttcgatgtcaagctgaaaa
caagcaagaggactgtgtcctggtctggggagagtgtaaccattccttcc
acaactgctgcatgtccctgtgggtgaaacagaacaatcgctgccctctg
tgccagcaggactgggtagtccaaagaatcggcaaatgagaggtggccca
ggcgttcctggtgtggttgctgaccctggacaaccttgccatcaagttac
tggacaaagactcaacactgcaggggattcatccttgagagagagaggat
gctgtgcgcctttgagactcaccaaaggcttgctttattaatttgtctgt
ttagttttgggaaattctctacaattaagataatttgttaaaagtggcct
ttcctacctctgtggtgtgtgtgtgatacgtatgcatagaagagcgagaa
caccagaaaatgatctttgtttatctgtcagtatccacaactgtgggaac
attgtgttcacagaagaacattgtttgtgtttatgcttgagggttaaaaa
atagataaacaaatgttacagtaacaaataaaatgcattgaaaagccaaa
aaaaaaaaaaaaaaagaaaaaagaaaaaacaaatctttaaaactgtgcat
tgttttctagcatttcttctgtcttatacccttcccagtttgcttccttt
aaacaagcacaagtccagtgagtgaaaatttcatagttttagagggactg
tacatttagttcatttggtagtgtttctaccatcagctatagcccttcta
ctctagcagattctattttatatgtaccgtgaaccctacatggaagaaat
ttttcacccatgtcatagtaaatagttacatcctcagttctttgagcaga
tctcatgcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_118018128_118019257
seq2: B6Ng01-068G23.g_68_1177

seq1  GAATTCATTTCCTTACTTAAGAAAAAAAAAATCGCTGCGCCGCCGCCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCCTTACTTAAGAAAAAAAAAATCGCTGCGCCGCCGCCATG  50

seq1  GCCGACGTGGAGGACGGCGAGGAACCCTGCGTCCTTTCTTCGCACTCCGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGACGTGGAGGACGGCGAGGAACCCTGCGTCCTTTCTTCGCACTCCGG  100

seq1  GAGCGCAGGCTCCAAGTCGGGAGGCGACAAGATGTTCTCTCTCAAGAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGCAGGCTCCAAGTCGGGAGGCGACAAGATGTTCTCTCTCAAGAAGT  150

seq1  GTAACGCGGTAGCCATGTGGAGCTGGGACGTTGAGTGCGATACCTGTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACGCGGTAGCCATGTGGAGCTGGGACGTTGAGTGCGATACCTGTGCC  200

seq1  ATCTGCAGGGTCCAGGTGATGGATGCCTGCCTTCGATGTCAAGCTGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCAGGGTCCAGGTGATGGATGCCTGCCTTCGATGTCAAGCTGAAAA  250

seq1  CAAGCAAGAGGACTGTGTCCTGGTCTGGGGAGAGTGTAACCATTCCTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAGAGGACTGTGTCCTGGTCTGGGGAGAGTGTAACCATTCCTTCC  300

seq1  ACAACTGCTGCATGTCCCTGTGGGTGAAACAGAACAATCGCTGCCCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGCTGCATGTCCCTGTGGGTGAAACAGAACAATCGCTGCCCTCTG  350

seq1  TGCCAGCAGGACTGGGTAGTCCAAAGAATCGGCAAATGAGAGGTGGCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCAGGACTGGGTAGTCCAAAGAATCGGCAAATGAGAGGTGGCCCA  400

seq1  GGCGTTCCTGGTGTGGTTGCTGACCCTGGACAACCTTGCCATCAAGTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTTCCTGGTGTGGTTGCTGACCCTGGACAACCTTGCCATCAAGTTAC  450

seq1  TGGACAAAGACTCAACACTGCAGGGGATTCATCCTTGAGAGAGAGAGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAAAGACTCAACACTGCAGGGGATTCATCCTTGAGAGAGAGAGGAT  500

seq1  GCTGTGCGCCTTTGAGACTCACCAAAGGCTTGCTTTATTAATTTGTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCGCCTTTGAGACTCACCAAAGGCTTGCTTTATTAATTTGTCTGT  550

seq1  TTAGTTTTGGGAAATTCTCTACAATTAAGATAATTTGTTAAAAGTGGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTGGGAAATTCTCTACAATTAAGATAATTTGTTAAAAGTGGCCT  600

seq1  TTCCTACCTCTGTGGTGTGTGTGTGATACGTATGCATAGAAGAGCGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACCTCTGTGGTGTGTGTGTGATACGTATGCATAGAAGAGCGAGAA  650

seq1  CACCAGAAAATGATCTTTGTTTATCTGTCAGTATCCACAACTGTGGGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAAAATGATCTTTGTTTATCTGTCAGTATCCACAACTGTGGGAAC  700

seq1  ATTGTGTTCACAGAAGAACATTGTTTGTGTTTATGCTTGAGGGTTAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTTCACAGAAGAACATTGTTTGTGTTTATGCTTGAGGGTTAAAAA  750

seq1  ATAGATAAACAAATGTTACAGTAACAAATAAAATGCATTGAAAAGCCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAAACAAATGTTACAGTAACAAATAAAATGCATTGAAAAGCCAAA  800

seq1  AAAAAAAAAAAAAAAGAAAAAAGAAAAAACAAATC-TTAAAACTGTGCAT  849
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAAAAAAAAAAAAAAGAAAAAAGAAAAAACAAATCTTTAAAACTGTGCAT  850

seq1  TGTTTTCTAGCATTTCTTCTGTCTTATACCCTTCCCAGTTTGCTTCCTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTAGCATTTCTTCTGTCTTATACCCTTCCCAGTTTGCTTCCTTT  900

seq1  AAACAAAGCACAAAGTCCAGTGAGTGAAAATTTCATAGTTTTAGAGGGAC  949
      |||| |||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAAC-AAGCAC-AAGTCCAGTGAGTGAAAATTTCATAGTTTTAGAGGGAC  948

seq1  TGTAACATTTAGTTCATTTGGTAGTGTTTCTACCATCAGCTATAAGCCCT  999
      ||| ||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGT-ACATTTAGTTCATTTGGTAGTGTTTCTACCATCAGCTAT-AGCCCT  996

seq1  TCTACTCTAGCAAGATCTATTTTAATATGTAACACGTGGAAAACACCTAC  1049
      ||||||||||||   |||||||| |||||||   ||||   ||| |||||
seq2  TCTACTCTAGCAGATTCTATTTT-ATATGTA--CCGTG---AAC-CCTAC  1039

seq1  ATGGAAGACATTTTTCACACCATGTACAATAGGTAAAAATTAGGTTAC-T  1098
      |||||||| ||||||||| ||||||   ||| ||||| |    ||||| |
seq2  ATGGAAGAAATTTTTCAC-CCATGT--CATA-GTAAATA----GTTACAT  1081

seq1  ACTCAGTTCTTTGAGGCAGTATCTTCATGCAC  1130
       ||||||||||||| |||| ||| ||||||||
seq2  CCTCAGTTCTTTGA-GCAG-ATC-TCATGCAC  1110