BAC Information

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BAC

Clone NameB6Ng01-068I10
Chromosome13 (Build37)
Map Location 98,730,466 - 98,731,601
singlet/doubletsinglet
Overlap geneRgnef
Upstream gene1700029F12Rik, EG620648, 5730427N09Rik, LOC100039663, Gfm2, Hexb, Enc1, LOC667676, LOC100039691, LOC100039704, EG328314, LOC100039526, LOC100039740
Downstream geneLOC667703, Utp15, Ankra2, EG667718, Btf3, Foxd1, LOC100039827, LOC100039665, LOC100039854, LOC218501, Tmem174, Tmem171, LOC669675, Fcho2, Tnpo1, EG432798
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068I10.bB6Ng01-068I10.g
ACCDH887087DH887088
length1,125990
definitionDH887087|Mus musculus domesticus DNA, BAC clone: B6Ng01-068I10, 5' end.DH887088|Mus musculus domesticus DNA, BAC clone: B6Ng01-068I10, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctttcagtatctgtgcttgattgtttgtagtcacgtaggaaagg
ctgcacacccacgttacagctgcgtcatgcgtgtgctcgcatgtttcaga
gctgatgcagacagaggtccaccacatccagactctgctcatcatgtccg
aggtcttcaggaaaggcatgaaggaggaactgcagctggaccacagcacg
gtggacaagatcttcccctgcttagatgagctgctggagactcaccggca
cttcttcttcagcatgaaggagcgcaggcaggagtcctgcgctggcagtg
acaggaactttgtgatcaaccaaattggagacattctggtacaacaggta
agaagggtgttgagccgggctcagaacccttaatgtttgcagaactccct
ttttagatttattcattttgtaagaatgaatgttttgtctgaatgcaatg
tctgtgcactttgtgcatgactgctgcccacagacgatagaacacagtat
cagatcccctggcactggagttacagatggttgtgagctaccatgtgggt
gctggtaaagaaacccaagtcccctgcaagagtaacaagtgttcttaatc
tcttagccctttctacagctctcctttgcagactctttattgattaaaat
cccttggagaaatagaagcgattttattacagttgctaggtaggggccag
gggctttcttttattgggtgttggtggatcctggctgcataacagatgtc
agagggctttctgaccgccaatgactatctcctgtgtatggctcagacct
ggcttggcaaactgcaagaaagtctttactgtctggaggttgtgaatccc
ggaacaaaagagttcttctcatttgtttattaacatatttccagcgccta
cagtgggatctgttgatccttagacttggagtatttgttgaatgattgat
gagagagagatagagagagatagacagacagacgacggccccccagtgta
gcatcagctattgcttagtgtggcgtttctaggtggatgttgagtgtcac
ctcctctaggattacggatattgaatgtccaccctacctaaggcagccat
ggaattaactgtttggtcgatgtga
gaattctctaatcactggagaaactaggaaaaggaatagcttagaatttg
aaaggaagctgacttgagtgaccatgacatcaacatcagacagatcaggg
gaggggtttaaaggactatgaatatttacattataaaaaaaactttcttt
ctctctcacttacccttaaacactccatacggccactcactgctgtcctg
ttcccccacacccctgtcctgtccctccacacacaccctaagagaaagaa
ggtcagatgtcttttcttgagagctttaagaacctggtgggagatttctt
acatatctgaaaaggaccagtgcctcctctcgggaacatgaaatcagact
ttgagccccaagtttggcttcagatttggcagggaagaataaggcacaag
aagggaggggtttctgtcctcagcactttgggtgttgtcacagacacaat
gaggcaggctgcagtcaagtctagccttcctgtgagttgatggttttgtg
aaaccagatgttgaaaagccaagggctaagagtcgggaatactgagttat
gttgctgcagaacgctccaacatcctgacactctgttgccttcactgcgt
gctacttgcatcttggatgtgcacttcagggttgcacaggggaaccgtga
aaagttccagatagggctcctggtaacttcggtgtgtccccacttaggcg
gcgatggctggctaccattcttagtcatggttttgtattttctcaggaaa
tcatataacattctggcatattctccaagtgtgtcacctctcataataaa
agaggaaaatccagatacaagaaagtaaagctccagagctgttcagatca
gaaagcatagcctcagaggcatcataagggcactggtggcgatgtgtttt
ataaccgagggtacgttttatggagcgtggcacggtgtggtaggagggga
tacctcaaagggccatgctgagacatccctacctaccgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_98730466_98731601
seq2: B6Ng01-068I10.b_43_1167 (reverse)

seq1  TCACATACAGACC-AACAGCTTAACTCCATGGCTGCCTTGGGTAGAGTGG  49
      ||||||   |||| ||||| |||| |||||||||||||| ||||| ||||
seq2  TCACAT--CGACCAAACAG-TTAATTCCATGGCTGCCTTAGGTAGGGTGG  47

seq1  GAACATTTCAAATACTGTAATTCTTAGAGAAGGTGACACTTCAACATCCA  99
        ||| |||||   | |||| || ||||| ||||||||| ||||||||||
seq2  --ACA-TTCAATATCCGTAA-TCCTAGAGGAGGTGACAC-TCAACATCCA  92

seq1  CCTAGGAAACGCCACACTAAAGCAATAAGCTGATGCTACACCTGGTGTGT  149
      |||| ||||||||||||| ||||||| ||||||||||||| |||| | | 
seq2  CCTA-GAAACGCCACACT-AAGCAAT-AGCTGATGCTACA-CTGG-GGGG  137

seq1  CTGTCTGTCTGTCTGTCTCTCTCTCTCTCTCTCTCTCTCATCAATCATTC  199
      | ||| |||||||||||| ||||||||| |||||||||||||||||||||
seq2  CCGTC-GTCTGTCTGTCTATCTCTCTCTATCTCTCTCTCATCAATCATTC  186

seq1  AACAAATACTCCAAGTCTAAGGATCCACAGAT-CCACTGTAGGCGCTGG-  247
      ||||||||||||||||||||||||| |||||| |||||||||||||||| 
seq2  AACAAATACTCCAAGTCTAAGGATCAACAGATCCCACTGTAGGCGCTGGA  236

seq1  AATATGTTAATAAACAAATGAGAAGAACTCTTTTGTTCCGGGATTCACAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTTAATAAACAAATGAGAAGAACTCTTTTGTTCCGGGATTCACAA  286

seq1  CCTCCAGACAGTAAAGACTTTCTTGCAGTTTGCCAAGCCAGGTCCTGAGC  347
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCTCCAGACAGTAAAGACTTTCTTGCAGTTTGCCAAGCCAGGT-CTGAGC  335

seq1  CATACACAGGAGATAGTCATTGGCGGTCAG-AAGCCCTCTGACATCTGTT  396
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CATACACAGGAGATAGTCATTGGCGGTCAGAAAGCCCTCTGACATCTGTT  385

seq1  ATGCAGCCAGGATCCACCAACACCCAATAAAAGAAAGCCCCTGGCCCCTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCCAGGATCCACCAACACCCAATAAAAGAAAGCCCCTGGCCCCTA  435

seq1  CCTAGCAACTGTAATAAAATCGCTTCTATTTCTCCAAGGGATTTTAATCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCAACTGTAATAAAATCGCTTCTATTTCTCCAAGGGATTTTAATCA  485

seq1  ATAAAGAGTCTGCAAAGGAGAGCTGTAGAAAGGGCTAAGAGATTAAGAAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAGTCTGCAAAGGAGAGCTGTAGAAAGGGCTAAGAGATTAAGAAC  535

seq1  ACTTGTTACTCTTGCAGGGGACTTGGGTTTCTTTACCAGCACCCACATGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTACTCTTGCAGGGGACTTGGGTTTCTTTACCAGCACCCACATGG  585

seq1  TAGCTCACAACCATCTGTAACTCCAGTGCCAGGGGATCTGATACTGTGTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCACAACCATCTGTAACTCCAGTGCCAGGGGATCTGATACTGTGTT  635

seq1  CTATCGTCTGTGGGCAGCAGTCATGCACAAAGTGCACAGACATTGCATTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCGTCTGTGGGCAGCAGTCATGCACAAAGTGCACAGACATTGCATTC  685

seq1  AGACAAAACATTCATTCTTACAAAATGAATAAATCTAAAAAGGGAGTTCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAACATTCATTCTTACAAAATGAATAAATCTAAAAAGGGAGTTCT  735

seq1  GCAAACATTAAGGGTTCTGAGCCCGGCTCAACACCCTTCTTACCTGTTGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACATTAAGGGTTCTGAGCCCGGCTCAACACCCTTCTTACCTGTTGT  785

seq1  ACCAGAATGTCTCCAATTTGGTTGATCACAAAGTTCCTGTCACTGCCAGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAATGTCTCCAATTTGGTTGATCACAAAGTTCCTGTCACTGCCAGC  835

seq1  GCAGGACTCCTGCCTGCGCTCCTTCATGCTGAAGAAGAAGTGCCGGTGAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACTCCTGCCTGCGCTCCTTCATGCTGAAGAAGAAGTGCCGGTGAG  885

seq1  TCTCCAGCAGCTCATCTAAGCAGGGGAAGATCTTGTCCACCGTGCTGTGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGCAGCTCATCTAAGCAGGGGAAGATCTTGTCCACCGTGCTGTGG  935

seq1  TCCAGCTGCAGTTCCTCCTTCATGCCTTTCCTGAAGACCTCGGACATGAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTGCAGTTCCTCCTTCATGCCTTTCCTGAAGACCTCGGACATGAT  985

seq1  GAGCAGAGTCTGGATGTGGTGGACCTCTGTCTGCATCAGCTCTGAAACAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAGTCTGGATGTGGTGGACCTCTGTCTGCATCAGCTCTGAAACAT  1035

seq1  GCGAGCACACGCATGACGCAGCTGTAACGTGGGTGTGCAGCCTTTCCTAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGCACACGCATGACGCAGCTGTAACGTGGGTGTGCAGCCTTTCCTAC  1085

seq1  GTGACTACAAACAATCAAGCACAGATACTGAAAGGAATTC  1136
      ||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTACAAACAATCAAGCACAGATACTGAAAGGAATTC  1125