BAC Information

Click to search

BAC

Clone NameB6Ng01-068K20
Chromosome13 (Build37)
Map Location 118,531,297 - 118,677,697
singlet/doubletdoublet
Overlap geneHcn1
Upstream geneParp8, LOC668288, LOC623312, Emb, EG623365, LOC382807
Downstream geneLOC100041695, LOC674926, Mrps30, LOC668309, LOC100041278, Fgf10
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068K20.bB6Ng01-068K20.g
ACCDH887195DH887196
length1,230817
definitionDH887195|Mus musculus domesticus DNA, BAC clone: B6Ng01-068K20, 5' end.DH887196|Mus musculus domesticus DNA, BAC clone: B6Ng01-068K20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,676,409 - 118,677,697)(118,531,297 - 118,532,113)
sequence
gaattcattttcacaggttttagatctagttagtaaatgtcagggataaa
gacagttctctgaattcttaatgaacagtcttttccattatcaccaacac
caccctactatttggtatagtttattattctttgctatttaccggttctt
ggggtgtatttctcttacctgtaataatttataaggcagagcaaccattt
tttacatttctggataaagaaggactgtggctagaaagtaaactcttcac
tctggacctaaagtatactgcatctgaaactgaagctgggtttggagcca
ggcgatgttagaacacattctccagccctcataaggaagataaatacact
tcaaacaatatggggtaagagacagttctctgtgccactaaccatgaatc
catccatgctaaaaataaactccatggttttcctcctccttctaccccat
ttaacgcaataattattttcacctgaaacattatctcctgccaatgtctc
ctctacactaatatatgttaatctcactgatatatccttacacttttact
tcctgaggtcactatttaaacaataattataaagtaaatataaagtaatc
cttatgctctatcttggttttgtctatttctattgaaataatattaaaga
tatcaaatataatggtttgattaaagttttgaaagctgatacaaaaatta
gtaaacttttacaaacaaaattaattcaaagtaatgatgcaattcttatg
aagtgatatatacatatatataggctgtaacaacatgggtgttgaatgcc
cccacaaatatcataattagagacttgcacaccccaccaaagggaatata
atgaggtggagtaacttgaagatatgggacctggcagtgatttttagcca
ctttatagacttactctggagtgtgtagtgaatgttgatttttctttcct
ttgcttctggctagagatttttgctttgccttctttttctttactacaca
tatgaacactgattgctatctcacgaggcctaaaagcaaaggtctgacta
gtcagactcagaacttctaaaacagaatagctatcagcatcactaaatct
gtacataaacctcaggacttcttacagtgacaaagccaactaaccagtga
catgcattaagcattagtaaccgacattggatagacgtagtactgctctg
ctagtatgaataggtcttagctccatttaa
gaattctgtcctcagaaaagtgactctttgcttaatgctcagattctcag
ccagtgaaatgtcccctaaactcattaggactcatttgtctttgtcagta
acaagctttcaagagctgggtcaacttggatggtttgtctctctgccact
ttgaatgaggccagtttacaggaaaaagaggaatttataatttgggatat
atctaggggaattacataaatttaaatttttttacaaagttccaattaca
aagaaaagtacatattaataaacattgtttaaaacaattggataaatccc
catacatttaccctttccataaagaacttgactttgggtattgcatgtga
gttcgaatgaatttaaaaagattctgaccactttggctcaaggacagcaa
tttctgctggataatcttctaatactcagtttagaagtgtcttagaacca
tatgttgtgataaaaatataacgtatatgccacgctgattatttaattca
agggtagagtttgtctcattccaagaatagatgacggctagagtgcatat
acttaaagccatactccataaatatcatttccttccatcaaggttttttt
tttcctttcagaaaactgaatgtaaatgattgctaagttagaactatgtg
gctatgctttgcagcagaaagcatcaatagaaggattttaatggttgaaa
gacacagtgtagtgtctacggagtaaaataattaaaatgttcatctaaaa
ggctgatcaagtgtttagaactcacttgagtctctctctctctctctctc
tctctctctctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_118676409_118677697
seq2: B6Ng01-068K20.b_48_1277 (reverse)

seq1  TTAAATGGAGCTAAGGAACTAATCTTACTTTATGCA-AGCAGCAAGCTAC  49
      |||||||||||||| || ||| || ||||    ||| ||||| |  ||||
seq2  TTAAATGGAGCTAA-GACCTATTCATACT---AGCAGAGCAGTA--CTAC  44

seq1  CTTACTGTCTTATTCCAAAAAATTGTCTGAATATAAAAATTAAAAAAAAA  99
            ||||   |||||     |||| |          ||    |  ||
seq2  ------GTCT--ATCCAA-----TGTCGG----------TT----ACTAA  67

seq1  TGCTTATAATGCATTGTCACTGTGTTAGTCTGCTTTTTGTCACTGTAAGA  149
      ||||  ||||||| |||||||| ||||||  ||  |||||||||||||||
seq2  TGCT--TAATGCA-TGTCACTG-GTTAGTTGGC--TTTGTCACTGTAAGA  111

seq1  AGTCCCTGAAGTTTTTAATGTATACAGATATAAAGTGATTTGGCTGATAG  199
      ||| ||||| ||||   |||  ||||||| |  ||||||   ||||||||
seq2  AGT-CCTGAGGTTT---ATG--TACAGATTT--AGTGAT---GCTGATAG  150

seq1  CTATTCTGGTTTTAGAAGTTCTGAGTCTTGACTAGTCAGACCCTTTGCTT  249
      ||||||| ||||||||||||||||||| |||||||||||| |||||||||
seq2  CTATTCT-GTTTTAGAAGTTCTGAGTC-TGACTAGTCAGA-CCTTTGCTT  197

seq1  TTAGGCCTTCGGTGAGATAGCAAATCAGTG-TCATATGTGTAGTAAAGAA  298
      ||||||||   |||||||||| |||||||| |||||||||||||||||||
seq2  TTAGGCCT--CGTGAGATAGC-AATCAGTGTTCATATGTGTAGTAAAGAA  244

seq1  AAAGAAGGCAAAGCAAAAATCTTCTAGCCAGGAAGCAAAGGAAAGAAAAA  348
      ||||||||||||||||||||| |||||||| |||||||||||||||||||
seq2  AAAGAAGGCAAAGCAAAAATC-TCTAGCCA-GAAGCAAAGGAAAGAAAAA  292

seq1  TCAACATTCAACTACACACTTCCAGAGTAAGTCTATAAAGTGGCTAAAAA  398
      ||||||||| ||||||||| ||||||||||||||||||||||||||||||
seq2  TCAACATTC-ACTACACAC-TCCAGAGTAAGTCTATAAAGTGGCTAAAAA  340

seq1  TCACCTGCCAGGTCCCATATCTTCAAGTTACTCCACCTCATTATATTCCC  448
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCA-CTGCCAGGTCCCATATCTTCAAGTTACTCCACCTCATTATATTCCC  389

seq1  TTTGGTGGGGTGTGCAAGTCTCTAATTATGATATTTGTGGGGGCATTCAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGGGGTGTGCAAGTCTCTAATTATGATATTTGTGGGGGCATTCAA  439

seq1  CACCCATGTTGTTACAGCCTATATATATGTATATATCACTTCATAAGAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATGTTGTTACAGCCTATATATATGTATATATCACTTCATAAGAAT  489

seq1  TGCATCATTACTTTGAATTAATTTTGTTTGTAAAAGTTTACTAATTTTTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCATTACTTTGAATTAATTTTGTTTGTAAAAGTTTACTAATTTTTG  539

seq1  TATCAGCTTTCAAAACTTTAATCAAACCATTATATTTGATATCTTTAATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGCTTTCAAAACTTTAATCAAACCATTATATTTGATATCTTTAATA  589

seq1  TTATTTCAATAGAAATAGACAAAACCAAGATAGAGCATAAGGATTACTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCAATAGAAATAGACAAAACCAAGATAGAGCATAAGGATTACTTT  639

seq1  ATATTTACTTTATAATTATTGTTTAAATAGTGACCTCAGGAAGTAAAAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTACTTTATAATTATTGTTTAAATAGTGACCTCAGGAAGTAAAAGT  689

seq1  GTAAGGATATATCAGTGAGATTAACATATATTAGTGTAGAGGAGACATTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGATATATCAGTGAGATTAACATATATTAGTGTAGAGGAGACATTG  739

seq1  GCAGGAGATAATGTTTCAGGTGAAAATAATTATTGCGTTAAATGGGGTAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGATAATGTTTCAGGTGAAAATAATTATTGCGTTAAATGGGGTAG  789

seq1  AAGGAGGAGGAAAACCATGGAGTTTATTTTTAGCATGGATGGATTCATGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGAGGAAAACCATGGAGTTTATTTTTAGCATGGATGGATTCATGG  839

seq1  TTAGTGGCACAGAGAACTGTCTCTTACCCCATATTGTTTGAAGTGTATTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGGCACAGAGAACTGTCTCTTACCCCATATTGTTTGAAGTGTATTT  889

seq1  ATCTTCCTTATGAGGGCTGGAGAATGTGTTCTAACATCGCCTGGCTCCAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCTTATGAGGGCTGGAGAATGTGTTCTAACATCGCCTGGCTCCAA  939

seq1  ACCCAGCTTCAGTTTCAGATGCAGTATACTTTAGGTCCAGAGTGAAGAGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCTTCAGTTTCAGATGCAGTATACTTTAGGTCCAGAGTGAAGAGT  989

seq1  TTACTTTCTAGCCACAGTCCTTCTTTATCCAGAAATGTAAAAAATGGTTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTCTAGCCACAGTCCTTCTTTATCCAGAAATGTAAAAAATGGTTG  1039

seq1  CTCTGCCTTATAAATTATTACAGGTAAGAGAAATACACCCCAAGAACCGG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTTATAAATTATTACAGGTAAGAGAAATACACCCCAAGAACCGG  1089

seq1  TAAATAGCAAAGAATAATAAACTATACCAAATAGTAGGGTGGTGTTGGTG  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGCAAAGAATAATAAACTATACCAAATAGTAGGGTGGTGTTGGTG  1139

seq1  ATAATGGAAAAGACTGTTCATTAAGAATTCAGAGAACTGTCTTTATCCCT  1248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGAAAAGACTGTTCATTAAGAATTCAGAGAACTGTCTTTATCCCT  1189

seq1  GACATTTACTAACTAGATCTAAAACCTGTGAAAATGAATTC  1289
      |||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTACTAACTAGATCTAAAACCTGTGAAAATGAATTC  1230

seq1: chr13_118531297_118532113
seq2: B6Ng01-068K20.g_68_884

seq1  GAATTCTGTCCTCAGAAAAGTGACTCTTTGCTTAATGCTCAGATTCTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCCTCAGAAAAGTGACTCTTTGCTTAATGCTCAGATTCTCAG  50

seq1  CCAGTGAAATGTCCCCTAAACTCATTAGGACTCATTTGTCTTTGTCAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGAAATGTCCCCTAAACTCATTAGGACTCATTTGTCTTTGTCAGTA  100

seq1  ACAAGCTTTCAAGAGCTGGGTCAACTTGGATGGTTTGTCTCTCTGCCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTTTCAAGAGCTGGGTCAACTTGGATGGTTTGTCTCTCTGCCACT  150

seq1  TTGAATGAGGCCAGTTTACAGGAAAAAGAGGAATTTATAATTTGGGATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGAGGCCAGTTTACAGGAAAAAGAGGAATTTATAATTTGGGATAT  200

seq1  ATCTAGGGGAATTACATAAATTTAAATTTTTTTACAAAGTTCCAATTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGGGGAATTACATAAATTTAAATTTTTTTACAAAGTTCCAATTACA  250

seq1  AAGAAAAGTACATATTAATAAACATTGTTTAAAACAATTGGATAAATCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGTACATATTAATAAACATTGTTTAAAACAATTGGATAAATCCC  300

seq1  CATACATTTACCCTTTCCATAAAGAACTTGACTTTGGGTATTGCATGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATTTACCCTTTCCATAAAGAACTTGACTTTGGGTATTGCATGTGA  350

seq1  GTTCGAATGAATTTAAAAAGATTCTGACCACTTTGGCTCAAGGACAGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGAATGAATTTAAAAAGATTCTGACCACTTTGGCTCAAGGACAGCAA  400

seq1  TTTCTGCTGGATAATCTTCTAATACTCAGTTTAGAAGTGTCTTAGAACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCTGGATAATCTTCTAATACTCAGTTTAGAAGTGTCTTAGAACCA  450

seq1  TATGTTGTGATAAAAATATAACGTATATGCCACGCTGATTATTTAATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGTGATAAAAATATAACGTATATGCCACGCTGATTATTTAATTCA  500

seq1  AGGGTAGAGTTTGTCTCATTCCAAGAATAGATGACGGCTAGAGTGCATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAGAGTTTGTCTCATTCCAAGAATAGATGACGGCTAGAGTGCATAT  550

seq1  ACTTAAAGCCATACTCCATAAATATCATTTCCTTCCATCAAGGTTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAGCCATACTCCATAAATATCATTTCCTTCCATCAAGGTTTTTTT  600

seq1  TTTCCTTTCAGAAAACTGAATGTAAATGATTGCTAAGTTAGAACTATGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTCAGAAAACTGAATGTAAATGATTGCTAAGTTAGAACTATGTG  650

seq1  GCTATGCTTTGCAGCAGAAAGCATCAATAGAAGGATTTTAATGGTTGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGCTTTGCAGCAGAAAGCATCAATAGAAGGATTTTAATGGTTGAAA  700

seq1  GACACAGTGTAGTGTCTACGGAGTAAAATAATTAAAATGTTCATCTAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGTGTAGTGTCTACGGAGTAAAATAATTAAAATGTTCATCTAAAA  750

seq1  GGCTGATCAAGTGTTTAGAACTCACTTGAGTCTCTCTCTCTCTCTCTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGATCAAGTGTTTAGAACTCACTTGAGTCTCTCTCTCTCTCTCTCTC  800

seq1  TCTCTCTCTCTCTCTCT  817
      |||||||||||||||||
seq2  TCTCTCTCTCTCTCTCT  817