BAC Information

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BAC

Clone NameB6Ng01-068M01
Chromosome4 (Build37)13 (Build37)
Map Location 8,020,666 - 8,021,46722,166,908 - 22,168,047
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC666700
Downstream geneCar8, LOC100039494, LOC100039505, LOC100039478, Rab2, EG666752, LOC666760, Chd7, LOC666782
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068M01.bB6Ng01-068M01.g
ACCDH887248DH887249
length1,0891,114
definitionDH887248|Mus musculus domesticus DNA, BAC clone: B6Ng01-068M01, 5' end.DH887249|Mus musculus domesticus DNA, BAC clone: B6Ng01-068M01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(8,020,666 - 8,021,467)(22,166,908 - 22,168,047)
sequence
gaattccttatggccccatgggacaaggaattgtcgaacgtgcttatcac
actctgaaaaactggcttttaaaaatgaaacaggggcagctttaccccac
aaggtcaccaaaagcacatcttgcttttgtcttgttcggtttaaatttct
tgcaaactgatgttaaaggtcagtctgcagcagatcgccactggcatcca
gttacttccagttcttatgccatggttaaatagcaggactcattaactaa
tacgtggaatggtccagaccccgtttttatctggggaagaggttctgtct
gtgttttttcacaaaaagaagacagagcacgatggctgcctgaaagactg
gttcgtcaagtggacacagatcctgaatcttctagtaagtatgactctaa
cctccttgatggctaaaaatcctttttagccgaaaaagttagtttggagc
acagcctccacttccagagaatctctagcctttctgctgattctcaaagc
tagctccccaacactgggaggtcagagtctgagcttgatcgttgctaatt
tgcaactgaataaagtacctgggcttccacaaagaagcttttatcctgtt
gcttttcactgtcttgactttgtttttcaagtagatcagtcaactcaaag
tcaagcctcaaagtctgatttcagcaagtgtgcagcctagcctcctagca
agtgtgggtggcagaaattattcaatatgaagaagcatattgagtatata
ttgtggctttggtctgatttgggaataaggtgtgctatgagggccggtta
gccaatgatgggcaaccagatttcggaaccatatcaatctaagacagagg
tacatgccaagaggccgtagtttattaataatacaccacagctccatgta
ttgtgtaaaataaacacaaacaagctgcatgtatgctccttgatggattt
gaatgattcaggaaaatctgagaattcctagacaggcatggctgcagtca
tcaatactccaggcagactatggagcataataatttttatgctcagtctg
gctattttcattaataaccagggaggatgtaggctcccc
gaattcctccctttacccacttaggatctttccactttcccccttagata
gctttcaaaggaaactttttacaatttggtaataaactctataatcactt
ctctaagtgtcttctcttcctgagacttccaactcgcatgctgaaagata
gagcccagtagttcctgctgagatagaacaaaggctgcattgcttaatcc
tcccctgttaggctgcagatgttaatcgcctaaaccagcagtcttttact
ctcagaaagaacaaaaaagtttttaggaccttttagaagttatcatcaac
atttcagtataattagagagctaggaagctccaagaccctcagactttaa
agccatcactagagtcctactctgtcactccaccactaccctggcccagg
ctgggagtctccctgcatttgaccttgaaagaaatctgtagagggctgac
ttgtgggagagaaggatgtgggctcctgtcactctgagcagggacagtgg
caggattcagggagaagatggtctatcatttcctaagtgcaatccagaat
tgtctcagtgtccacaaggacagtgtgtgtggtcactgtgcgtgatctgc
tccttacacaggacaagcaggggtaggagacagaggcacctgccgtgcag
cctggagtaggaagctcttgctccgactgcttctcttagctgtataactt
ctggcgacttcagtcttctgtgcatggagcactctttctttctttatggt
gatttcatttattgtaatttctccttttctagatcaaatgtaaaccatgg
aatatgagaattgcagataaaacagacatgaggctaaatactgatagtaa
catctgattttagaaaatggtttttagtgcgaagtaggaacttcacaagg
tactactattcctgtcagttcattgactccctaaattatacctgtattac
ataaaagctactttacatgtgaaagtacttttaagagccaaataagtatg
ctcaaggtgatgactatgattggaagccagatttaagtctacatgggtgt
ccaagattttctttgaatctgagctttctattctaacttgcatccaccgt
cattgatccctcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_8020666_8021467
seq2: B6Ng01-068M01.b_344_1130

seq1  GTTTTTTCACAAAAAGAAGACAGAGCGCGATGGCTGCCTGAAAGACTGGT  50
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTTTTTTCACAAAAAGAAGACAGAGCACGATGGCTGCCTGAAAGACTGGT  50

seq1  TGGTCAAGTGGACACAGATCCTGAATCTTCTAGTAAGTATGATTTTAACC  100
      | |||||||||||||||||||||||||||||||||||||||| | |||||
seq2  TCGTCAAGTGGACACAGATCCTGAATCTTCTAGTAAGTATGACTCTAACC  100

seq1  TCCTTGATGGCTAAAAATCCTTTTTTGCTGAAAAAGTTAATTTGGAGCAC  150
      ||||||||||||||||||||||||| || |||||||||| ||||||||||
seq2  TCCTTGATGGCTAAAAATCCTTTTTAGCCGAAAAAGTTAGTTTGGAGCAC  150

seq1  AGCCTCCACTTTCAGAGAATCTCCATTAGCTTTCCTGCTAATTCTCAAAG  200
      ||||||||||| |||||||||||   |||| || ||||| ||||||||||
seq2  AGCCTCCACTTCCAGAGAATCTC---TAGCCTTTCTGCTGATTCTCAAAG  197

seq1  CCAGCTCCCCAACACTGGGAGTTCAGAGTCTGATCTGAGCTTGATCGTTG  250
      | ||||||||||||||||||| ||||||     |||||||||||||||||
seq2  CTAGCTCCCCAACACTGGGAGGTCAGAG-----TCTGAGCTTGATCGTTG  242

seq1  CTAATTTGCAACTGAATAAAGTACCTGGACTTCCACAAAGAAGCTTTTAT  300
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTAATTTGCAACTGAATAAAGTACCTGGGCTTCCACAAAGAAGCTTTTAT  292

seq1  CCTGTTGCTTTTCACTGTTTCAGCTTTGTTTTTCAAGCAGGTCAGTCTGT  350
      |||||||||||||||||| |   |||||||||||||| || ||||||   
seq2  CCTGTTGCTTTTCACTGTCTTGACTTTGTTTTTCAAGTAGATCAGTC---  339

seq1  TTTTCAA--TC-AGCCTCACAGCCTGATTTCAGCAAGCGTGCAGCCTTGC  397
         ||||  || ||||||| || |||||||||||||| ||||||||| ||
seq2  AACTCAAAGTCAAGCCTCAAAGTCTGATTTCAGCAAGTGTGCAGCCTAGC  389

seq1  CTCC-AGCAAGCGTGGGTGGCAGAGATTTATCAATATGAAGAAGCATATT  446
      |||| |||||| |||||||||||| |||  ||||||||||||||||||||
seq2  CTCCTAGCAAGTGTGGGTGGCAGAAATTATTCAATATGAAGAAGCATATT  439

seq1  CAATGTATATTGTGGCTTTGGTCTGATTTGGGAATAAGGTGTGCTATGAG  496
       | | |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATATATTGTGGCTTTGGTCTGATTTGGGAATAAGGTGTGCTATGAG  489

seq1  GGCCGGTTAGCCAATAACGGGCAACCAGATTTCGGAACTATATCAATCTC  546
      ||||||||||||||| | |||||||||||||||||||| |||||||||| 
seq2  GGCCGGTTAGCCAATGATGGGCAACCAGATTTCGGAACCATATCAATCTA  539

seq1  AGACAGAGGTATATGCCAAGAGGCCGTGGTTTATTAATAATACACCACAG  596
      ||||||||||| ||||||||||||||| ||||||||||||||||||||||
seq2  AGACAGAGGTACATGCCAAGAGGCCGTAGTTTATTAATAATACACCACAG  589

seq1  AGCCATGT-TTGTGCAAAATAAACACAAACAAGCTGCATATATTCTCCTT  645
        |||||| ||||| |||||||||||||||||||||||| ||| ||||||
seq2  CTCCATGTATTGTGTAAAATAAACACAAACAAGCTGCATGTATGCTCCTT  639

seq1  GACAGATAAGAATCGTTCGGGAAAATCTGAGATATCCCAAGCCAGGCACG  695
      ||  |||  ||||  ||| ||||||||||||| || || || |||||| |
seq2  GATGGATTTGAATGATTCAGGAAAATCTGAGA-ATTCCTAGACAGGCATG  688

seq1  GCCGCCAGCCACCATAACTCCTAGGCAGGACTATGGAGCATAAATAAATT  745
      || | ||| || ||  ||||| ||||| ||||||||||||| ||||| ||
seq2  GCTG-CAGTCATCAATACTCC-AGGCA-GACTATGGAGCAT-AATAATTT  734

seq1  TTATGCCTCAGTCTAGCTATTTTTATTATATAATCAGGGAGGAATTGTAG  795
      ||||| |||||||| |||||||| |||| |||| |||||||||  |||||
seq2  TTATG-CTCAGTCTGGCTATTTTCATTA-ATAACCAGGGAGGA--TGTAG  780

seq1  CCTCCCC  802
       ||||||
seq2  GCTCCCC  787

seq1: chr13_22166908_22168047
seq2: B6Ng01-068M01.g_67_1180

seq1  GAATTCCTCCCTTTACCCACTTAGGATCTTTCCACTTTCCCCCTTAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCCTTTACCCACTTAGGATCTTTCCACTTTCCCCCTTAGATA  50

seq1  GCTTTCAAAGGAAACTTTTTACAATTTGGTAATAAACTCTATAATCACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAAAGGAAACTTTTTACAATTTGGTAATAAACTCTATAATCACTT  100

seq1  CTCTAAGTGTCTTCTCTTCCTGAGACTTCCAACTCGCATGCTGAAAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGTGTCTTCTCTTCCTGAGACTTCCAACTCGCATGCTGAAAGATA  150

seq1  GAGCCCAGTAGTTCCTGCTGAGATAGAACAAAGGCTGCATTGCTTAATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCAGTAGTTCCTGCTGAGATAGAACAAAGGCTGCATTGCTTAATCC  200

seq1  TCCCCTGTTAGGCTGCAGATGTTAATCGCCTAAACCAGCAGTCTTTTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGTTAGGCTGCAGATGTTAATCGCCTAAACCAGCAGTCTTTTACT  250

seq1  CTCAGAAAGAACAAAAAAGTTTTTAGGACCTTTTAGAAGTTATCATCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAAGAACAAAAAAGTTTTTAGGACCTTTTAGAAGTTATCATCAAC  300

seq1  ATTTCAGTATAATTAGAGAGCTAGGAAGCTCCAAGACCCTCAGACTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGTATAATTAGAGAGCTAGGAAGCTCCAAGACCCTCAGACTTTAA  350

seq1  AGCCATCACTAGAGTCCTACTCTGTCACTCCACCACTACCCTGGCCCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCACTAGAGTCCTACTCTGTCACTCCACCACTACCCTGGCCCAGG  400

seq1  CTGGGAGTCTCCCTGCATTTGACCTTGAAAGAAATCTGTAGAGGGCTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGTCTCCCTGCATTTGACCTTGAAAGAAATCTGTAGAGGGCTGAC  450

seq1  TTGTGGGAGAGAAGGATGTGGGCTCCTGTCACTCTGAGCAGGGACAGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGAGAGAAGGATGTGGGCTCCTGTCACTCTGAGCAGGGACAGTGG  500

seq1  CAGGATTCAGGGAGAAGATGGTCTATCATTTCCTAAGTGCAATCCAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTCAGGGAGAAGATGGTCTATCATTTCCTAAGTGCAATCCAGAAT  550

seq1  TGTCTCAGTGTCCACAAGGACAGTGTGTGTGGTCACTGTGCGTGATCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAGTGTCCACAAGGACAGTGTGTGTGGTCACTGTGCGTGATCTGC  600

seq1  TCCTTACACAGGACAAGCAGGGGTAGGAGACAGAGGCACCTGCCGTGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACACAGGACAAGCAGGGGTAGGAGACAGAGGCACCTGCCGTGCAG  650

seq1  CCTGGAGTAGGAAGCTCTTGCTCCGACTGCTTCTCTTAGCTGTATAACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGTAGGAAGCTCTTGCTCCGACTGCTTCTCTTAGCTGTATAACTT  700

seq1  CTGGCGACTTCAGTCTTCTGTGCATGGAGCACTCTTTCTTTCTTTATGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGACTTCAGTCTTCTGTGCATGGAGCACTCTTTCTTTCTTTATGGT  750

seq1  GATTTCATTTATTGTAATTTCTCCTTTTCTAGATCAAATGTAAACCATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCATTTATTGTAATTTCTCCTTTTCTAGATCAAATGTAAACCATGG  800

seq1  AATATGAGAATTGCAGATAAAACAGACATGAGGCTAAATACTGATAGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAGAATTGCAGATAAAACAGACATGAGGCTAAATACTGATAGTAA  850

seq1  CATCTGATTTTAGAAAATGGATTTTTAGTGCGAAGTAGGAACTTCACAAG  900
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CATCTGATTTTAGAAAATGG-TTTTTAGTGCGAAGTAGGAACTTCACAAG  899

seq1  GTACTACTATTCCTGTCAGTTCATTGACTCCCTAAATTATACCTGTATTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTACTATTCCTGTCAGTTCATTGACTCCCTAAATTATACCTGTATTA  949

seq1  CATAAAAGCATACTTTACATGTGAAAAGTACTTTTTAAAGAAGCCAAATA  1000
      ||||||||| ||||||||||||| |||||||||||  ||| |||||||||
seq2  CATAAAAGC-TACTTTACATGTG-AAAGTACTTTT--AAG-AGCCAAATA  994

seq1  AGTATGCTCAAGGTGATGAACATATGAATTGGAAAGCCAGAATTTAAGTC  1050
      |||||||||||||||||||   |||| ||||| ||||||| |||||||||
seq2  AGTATGCTCAAGGTGATGA--CTATG-ATTGG-AAGCCAG-ATTTAAGTC  1039

seq1  TACATTGGGTGGTCACAAAGGATGTTCTTGTGAATACTGAGCTTTCTATT  1100
      |||| ||||| ||| |||  ||| ||||| ||||| |||||||||||| |
seq2  TACA-TGGGT-GTC-CAA--GATTTTCTT-TGAAT-CTGAGCTTTCTA-T  1081

seq1  TCTAAAACTTTGGCATCCACACGTCATTTGAATCCCTCAT  1140
      |||  |||||  |||||||| |||||||   |||||||||
seq2  TCT--AACTT--GCATCCAC-CGTCATT--GATCCCTCAT  1114