BAC Information

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BAC

Clone NameB6Ng01-068N17
Chromosome13 (Build37)
Map Location 87,815,216 - 87,942,026
singlet/doubletdoublet
Overlap geneLOC675707
Upstream genenone
Downstream geneLOC667230, EG435375
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068N17.bB6Ng01-068N17.g
ACCDH887327DH887328
length1,115991
definitionDH887327|Mus musculus domesticus DNA, BAC clone: B6Ng01-068N17, 5' end.DH887328|Mus musculus domesticus DNA, BAC clone: B6Ng01-068N17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,940,930 - 87,942,026)(87,815,216 - 87,815,936)
sequence
gaattcaaggcccatacctaaacatgagaatagcaatctacagcaaacca
gtaaccaacatcaaagcaaatggtgagaagctgaaagcattcccgctaaa
atcagggactagacaaggctgccaactttctccctacctattcaacattg
tacttgaagtcctagccagaacaattagacaacaaaaagagatcaagggg
atagaaatttgaaaggaagaagtcaaaatatttttatattcttaataata
attttctaactgacgtatagctagcaaagttttagtcccacttcatggtc
ttaatcttcacttgattgatgaatcctgtgctgtgtaaatgatgtgactt
gagtagcattaaaagagaatagaccaaacgcctatcaattataaggagaa
atatttaaaatcagagacaatatgataatataatacaaaaataaccaaat
ataggatccaactcttaataaaataaacaataaaatagaaagaacaaaaa
gctattttttttaattataaagagtacaaatgagtctttaagagtaaaaa
taacagtatggtagcctttaagtgcagcatttgagaggcagtggtaggta
gatctacatgagtttgtcaccagcctgctctctattctgtattcaaggat
agctcaggctacacagaaagcctgtgtatcttactatgtcaaaaggatca
tctactataatcaagttagcctgattacagagtaaagtaatgacttgaca
tttttaagtcaataaatgtataaatcatttattggagttaaagaaagaaa
accctacaatgatcatctgactagatgcagaaaatgcctttgacaacatt
caacatgtcatcattataaaagtgctagagaaagtattacagaaacaaac
acagttcctcatattcaaggttatatatgtgaaaactgttaaccaatccc
atcctaaatggagaaaacacaaagaattccctttaaaataaaataactac
cagtgatattagtatatcatctatctccactcctaacagaatatgatatg
atatttacagatctcagattattcagaaaaatatttagcaatgattacat
ccaaatagctataaa
gaattcttttactcctctgcccaaacaaattctgctggcaaaacaaaatt
attcactggtgctatttagatattttttcgatcactgaaactcagatttt
agtacagattaccagattgaatttcatggtgataaatgttaacaaaagca
agcatcagtacttcaattttatgttttatataactatttacctaattact
agaaaatgaaatttacatatattatccaaatttctctacttttcctgtga
taaagcactctttataagctatttaaaagagaaagtatttaccttgacat
tagttacagaagggttaccatccatggtcacaaatcaggaggctaatcat
tgctattatatcttcagtgtcttaatcagggttttatccctgcaaaaaca
ccatgaccaagaagcacgctgtggaggaaagggtttattcagcttacact
tccacactgctgttcatcactaaaggaagtcaggaccagaactcaagtag
gtcaggaagcagaagctgatgctgctcataaaggagtgttactggcttgc
ttcctctggcttgctcagcttgctttcttatactacctaagactagaagc
ctagggatggcagcacctacaatgggccctccccacttgatcaatagttg
agaaacatttcttacagctgtatctcatggagaaatttcctcaacggagg
ctcttttctctgtgataactccagtttctgtcaagttgacacataaaacc
agccagtacattcaatatggttgcggagaatgaacaagaaggattgcaaa
acattaagactgctccaagccaagtacttctccttccaattttcaccttt
tgaaagcttccttgtgttcccaaacagcttcacctgccagggacaaaact
tttaaatacatgaatgtatgggtaaatatcacatttcaatcactactgta
tatgatgaaagaaacacaaataatgggatgtctctctggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_87940930_87942026
seq2: B6Ng01-068N17.b_76_1163 (reverse)

seq1  TTTATAAGCTATTGTGAATGTTAATCATTGCTAAATATTTTTCTTGAATA  50
      ||||| ||||||| || ||| |||||||||||||||||||||| ||||||
seq2  TTTAT-AGCTATT-TGGATG-TAATCATTGCTAAATATTTTTC-TGAATA  46

seq1  ATTCTGAAGATCTGTTAAATATCATATCATATTCTGTTAAGGAGTGGAGA  100
      | |||| ||||||| ||||||||||||||||||||||| |||||||||||
seq2  A-TCTG-AGATCTG-TAAATATCATATCATATTCTGTT-AGGAGTGGAGA  92

seq1  TAGATGATATACTAATATCACTGGTAGTTATTTTATTTTAAAGGGAATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGATATACTAATATCACTGGTAGTTATTTTATTTTAAAGGGAATTC  142

seq1  TTTGTGTTTTCTCCATTTAGGATGGGATTGGTTAACAGTTTTTCACATAT  200
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTTGTGTTTTCTCCATTTAGGATGGGATTGGTTAACAG-TTTTCACATAT  191

seq1  ATAACCTTGAATATGAGGAACTGTGTTTGTTTCTGTAATACTTTCTCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTTGAATATGAGGAACTGTGTTTGTTTCTGTAATACTTTCTCTAG  241

seq1  CACTTTTATAATGATGACATGTTGAATGTTGTCAAAGGCATTTTCTGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTATAATGATGACATGTTGAATGTTGTCAAAGGCATTTTCTGCAT  291

seq1  CTAGTCAGATGATCATTGTAGGGTTTTCTTTCTTTAACTCCAATAAATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCAGATGATCATTGTAGGGTTTTCTTTCTTTAACTCCAATAAATGA  341

seq1  TTTATACATTTATTGACTTAAAAATGTCAAGTCATTACTTTACTCTGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACATTTATTGACTTAAAAATGTCAAGTCATTACTTTACTCTGTAA  391

seq1  TCAGGCTAACTTGATTATAGTAGATGATCCTTTTGACATAGTAAGATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTAACTTGATTATAGTAGATGATCCTTTTGACATAGTAAGATACA  441

seq1  CAGGCTTTCTGTGTAGCCTGAGCTATCCTTGAATACAGAATAGAGAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTTCTGTGTAGCCTGAGCTATCCTTGAATACAGAATAGAGAGCAG  491

seq1  GCTGGTGACAAACTCATGTAGATCTACCTACCACTGCCTCTCAAATGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGACAAACTCATGTAGATCTACCTACCACTGCCTCTCAAATGCTG  541

seq1  CACTTAAAGGCTACCATACTGTTATTTTTACTCTTAAAGACTCATTTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAAAGGCTACCATACTGTTATTTTTACTCTTAAAGACTCATTTGTA  591

seq1  CTCTTTATAATTAAAAAAAATAGCTTTTTGTTCTTTCTATTTTATTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTATAATTAAAAAAAATAGCTTTTTGTTCTTTCTATTTTATTGTTT  641

seq1  ATTTTATTAAGAGTTGGATCCTATATTTGGTTATTTTTGTATTATATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTAAGAGTTGGATCCTATATTTGGTTATTTTTGTATTATATTAT  691

seq1  CATATTGTCTCTGATTTTAAATATTTCTCCTTATAATTGATAGGCGTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGTCTCTGATTTTAAATATTTCTCCTTATAATTGATAGGCGTTTG  741

seq1  GTCTATTCTCTTTTAATGCTACTCAAGTCACATCATTTACACAGCACAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTCTCTTTTAATGCTACTCAAGTCACATCATTTACACAGCACAGG  791

seq1  ATTCATCAATCAAGTGAAGATTAAGACCATGAAGTGGGACTAAAACTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCAATCAAGTGAAGATTAAGACCATGAAGTGGGACTAAAACTTTG  841

seq1  CTAGCTATACGTCAGTTAGAAAATTATTATTAAGAATATAAAAATATTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTATACGTCAGTTAGAAAATTATTATTAAGAATATAAAAATATTTT  891

seq1  GACTTCTTCCTTTCAAATTTCTATCCCCTTGATCTCTTTTTGTTGTCTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTTCCTTTCAAATTTCTATCCCCTTGATCTCTTTTTGTTGTCTAA  941

seq1  TTGTTCTGGCTAGGACTTCAAGTACAATGTTGAATAGGTAGGGAGAAAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTGGCTAGGACTTCAAGTACAATGTTGAATAGGTAGGGAGAAAGT  991

seq1  TGGCAGCCTTGTCTAGTCCCTGATTTTAGCGGGAATGCTTTCAGCTTCTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCCTTGTCTAGTCCCTGATTTTAGCGGGAATGCTTTCAGCTTCTC  1041

seq1  ACCATTTGCTTTGATGTTGGTTACTGGTTTGCTGTAGATTGCTATTC  1097
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTGCTTTGATGTTGGTTACTGGTTTGCTGTAGATTGCTATTC  1088

seq1: chr13_87815216_87815936
seq2: B6Ng01-068N17.g_68_788

seq1  GAATTCTTTTACTCCTCTGCCCAAACAAATTCTGCTGGCAAAACAAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTACTCCTCTGCCCAAACAAATTCTGCTGGCAAAACAAAATT  50

seq1  ATTCACTGGTGCTATTTAGATATTTTTTCGATCACTGAAACTCAGATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTGGTGCTATTTAGATATTTTTTCGATCACTGAAACTCAGATTTT  100

seq1  AGTACAGATTACCAGATTGAATTTCATGGTGATAAATGTTAACAAAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGATTACCAGATTGAATTTCATGGTGATAAATGTTAACAAAAGCA  150

seq1  AGCATCAGTACTTCAATTTTATGTTTTATATAACTATTTACCTAATTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCAGTACTTCAATTTTATGTTTTATATAACTATTTACCTAATTACT  200

seq1  AGAAAATGAAATTTACATATATTATCCAAATTTCTCTACTTTTCCTGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGAAATTTACATATATTATCCAAATTTCTCTACTTTTCCTGTGA  250

seq1  TAAAGCACTCTTTATAAGCTATTTAAAAGAGAAAGTATTTACCTTGACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCACTCTTTATAAGCTATTTAAAAGAGAAAGTATTTACCTTGACAT  300

seq1  TAGTTACAGAAGGGTTACCATCCATGGTCACAAATCAGGAGGCTAATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTACAGAAGGGTTACCATCCATGGTCACAAATCAGGAGGCTAATCAT  350

seq1  TGCTATTATATCTTCAGTGTCTTAATCAGGGTTTTATCCCTGCAAAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTATATCTTCAGTGTCTTAATCAGGGTTTTATCCCTGCAAAAACA  400

seq1  CCATGACCAAGAAGCACGCTGTGGAGGAAAGGGTTTATTCAGCTTACACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACCAAGAAGCACGCTGTGGAGGAAAGGGTTTATTCAGCTTACACT  450

seq1  TCCACACTGCTGTTCATCACTAAAGGAAGTCAGGACCAGAACTCAAGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACTGCTGTTCATCACTAAAGGAAGTCAGGACCAGAACTCAAGTAG  500

seq1  GTCAGGAAGCAGAAGCTGATGCTGCTCATAAAGGAGTGTTACTGGCTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGAAGCAGAAGCTGATGCTGCTCATAAAGGAGTGTTACTGGCTTGC  550

seq1  TTCCTCTGGCTTGCTCAGCTTGCTTTCTTATACTACCTAAGACTAGAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTGGCTTGCTCAGCTTGCTTTCTTATACTACCTAAGACTAGAAGC  600

seq1  CTAGGGATGGCAGCACCTACAATGGGCCCTCCCCACTTGATCAATAGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGATGGCAGCACCTACAATGGGCCCTCCCCACTTGATCAATAGTTG  650

seq1  AGAAACATTTCTTACAGCTGTATCTCATGGAGAAATTTCCTCAACGGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACATTTCTTACAGCTGTATCTCATGGAGAAATTTCCTCAACGGAGG  700

seq1  CTCTTTTCTCTGTGATAACTC  721
      |||||||||||||||||||||
seq2  CTCTTTTCTCTGTGATAACTC  721