BAC Information

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BAC

Clone NameB6Ng01-069H03
Chromosome13 (Build37)
Map Location 28,066,473 - 28,067,253
singlet/doubletsinglet
Overlap genenone
Upstream genePrl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036
Downstream genePrl4a1, Prl5a1, LOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1, LOC626683, 2610307P16Rik, Sox4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069H03.bB6Ng01-069H03.g
ACCDH887754DH887755
length1,1441,272
definitionDH887754|Mus musculus domesticus DNA, BAC clone: B6Ng01-069H03, 5' end.DH887755|Mus musculus domesticus DNA, BAC clone: B6Ng01-069H03, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaatcatgtattgactggaaatcaaacttgtattagctatcattc
atggagccaaaagttgctcttgtattctgttgatggaggaaaataatcaa
tagtcttatacaaaaatgaaccgtgtggaatatgaaaaggactagtctgg
caatatattaactctgttgttatagaggcatgaatgctatgggactgacc
aacctttatatgattagagataagggctcccccctcaagatgaaatgcat
cactagtactgtgaactgagctttaaacctatagctagatataataaagg
ccataaatgaggcttatttctactaagtagacagagatttaactgccccc
ataatagcttatctttataaacatagatcagtgaaattctcaactcacat
cattaaagtttctttttgcagtagtgatgattaatacaaaggcttagaaa
tggtcagagtgcagagaataaaaggctattagtgctccactctaaaggaa
agtgtatatcacactcaaatttagtattcatggatgaggtggtgacaaaa
tgtaagagtcagaggaagtttagaactctcaagaaatattgatttccaga
tatggaagggtagttgcacaaatgaattcacagtgtcctggactacatat
ataagatattcacaaggtcaagtcagctaaaattctagcatgaaagaaag
aggagctcaaaaagtcctaccactggctgaggatctaatgtcatttttta
tggttatggttctgataggataccaaagttaaagtgcacagcctcacatc
catgtgtatactggcagtactaagtggattcagtggcttaaaaacaagca
catgacgttatgttattgtgtcataaccatttgaatacactttgataatt
tctattacaaatttgatgattatgaaaagtaaaagatctggtgaccattt
acgaaatctatacagaattctgactaaattatgtactttgcagacttctt
gcttccttgttcatcctttgatgatacagaatagaagtattgcatattta
ctcccaactgctttgtatctggtgaccaagtaccttatgaggtttataca
tggtcatatcacaagaaggttcaggagggactggacatgctttt
gaattcaaaccaaaaacttagaggaagacctgttcaacactgtggatgaa
gtgaaaaggagagtatctgattgccccagtctctgacctgcagagaccag
aatgagaaggacactaaggcgggttcacacagcagcttctttacttgcag
ctttttcacttctagctctcttccccagcagcttcttcccactggccttc
ttgcagcaagggttatactcctatactctcagcaactgacctcatctcgc
tccacaccaccccatccaatcaggatcacacacgctccaggaacgagctc
aggtcggtcacagatagactgacagatctggatcgtgaggaatactccag
cctggcaggcagcctacgcatgcagttctactgcacatgttcgaaaaagg
tagtaaacatgtggggttcacggggcctggcaatgggccagggcgccatc
ttggcccaatgcggctgcacctgctttccagatctgatcttgatgacaaa
gtagaagaaagggatcatccagtcaaagaaaactataaaaaaaagttcag
gcacaaactgtccatgaaatctgtgacaccagaaaaagaccaaacacata
agtaataggtatagaaagagacgaaaagattttcaacaaaattacaaaag
aaatttcccagatttaaagaaaagtatgcctttcagtgttctcgaggcag
gtagaatatcagacagtaaaagcgaggaaactcctatgacacctaaaaat
cactacaataagttgacagatgcagaaaggaaatcaaaaaatataagggt
aaaaatcctagtcataaataatgacaggttttgttagagtaacacatgct
tttcaatggaaaatctgaaatctagaaaggcttgggttgatcgcctacaa
actctgaaagaacagatgtcccataccagacaactattttgaaaaatcac
tagtcatacttggagaagaaacaaacatgtctatgatacacaactcagga
gtcagagctacagaggatatcatgattatttcaatggagagggagattac
accaccaaaggaacaggaataaataacctgacaggctgatatctggggga
gaaatctgggttcccgattccacgagactagctgcccaggtgaaagttga
cttaaggctacgcttcttggacggtcctgttcagcttaccctccgcaaga
ccagtctgaaagagaggcagaaatttctgtgtccactctcctgcgaaaga
gaagaagactctgccgtacgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_28066473_28067253
seq2: B6Ng01-069H03.b_410_1189

seq1  TTATAAACATAGATCAGTGAAATTCTCAACTCACATCATT--AGTTTCGT  48
      ||||||||||||||||||||||||||||||||||||||||  |||||| |
seq2  TTATAAACATAGATCAGTGAAATTCTCAACTCACATCATTAAAGTTTCTT  50

seq1  TTTGCAGTAGTGAAGATTAATACAAAGGCTTACAAGTGGTCAGAGTACAG  98
      ||||||||||||| |||||||||||||||||| || |||||||||| |||
seq2  TTTGCAGTAGTGATGATTAATACAAAGGCTTAGAAATGGTCAGAGTGCAG  100

seq1  AGAATAAAAGGCTATTAGTGCTCCACTCTAAAGGAAAGTGTATATCACAC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAAAGGCTATTAGTGCTCCACTCTAAAGGAAAGTGTATATCACAC  150

seq1  TCAAATTTAGTATTCATGGATGAGGTGGTGACAAAATGTAAGAGTCAGAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTTAGTATTCATGGATGAGGTGGTGACAAAATGTAAGAGTCAGAG  200

seq1  GAATTTTAGAACTCTCAAGAAATATTGATTTCCAGATATGGAAGGGTAGT  248
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTAGAACTCTCAAGAAATATTGATTTCCAGATATGGAAGGGTAGT  250

seq1  TGCACAAATGAATTCACAGTGTCCTGGACTACATACATAAGATATTCACA  298
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGCACAAATGAATTCACAGTGTCCTGGACTACATATATAAGATATTCACA  300

seq1  AGGTCAAGTCAGCTAAAATTCTAGCATGAAAAAAAGAGGAGCTCACAAAG  348
      ||||||||||||||||||||||||||||||| ||||||||||||| ||||
seq2  AGGTCAAGTCAGCTAAAATTCTAGCATGAAAGAAAGAGGAGCTCAAAAAG  350

seq1  TCCTACCACTGGCTGAGGATCTAATGTCATTTTTTATGGTTATGGTTCTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACCACTGGCTGAGGATCTAATGTCATTTTTTATGGTTATGGTTCTG  400

seq1  ATAGGATACCAAAGTTAAAGTGCACAGCCTCACATCCATGTGTATACTGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATAGGATACCAAAGTTAAAGTGCACAGCCTCACATCCATGTGTATACTGG  450

seq1  CAGTACTAAGTGGATTCAATGGCTTAAAAACAAGCACATGATGTTATTTT  498
      |||||||||||||||||| |||||||||||||||||||||| ||||| ||
seq2  CAGTACTAAGTGGATTCAGTGGCTTAAAAACAAGCACATGACGTTATGTT  500

seq1  ATTGTGTCATAAACTTTTGAATACACTTTGATAATTTCTATTACAAATTT  548
      |||||||||||| | |||||||||||||||||||||||||||||||||||
seq2  ATTGTGTCATAACCATTTGAATACACTTTGATAATTTCTATTACAAATTT  550

seq1  GATGATTATGAAAAGTAAAAAATCTGGTGCCCATTTATGAAATCTATACA  598
      |||||||||||||||||||| |||||||| ||||||| ||||||||||||
seq2  GATGATTATGAAAAGTAAAAGATCTGGTGACCATTTACGAAATCTATACA  600

seq1  GAATTCTGACTAAATTATGTACTTGGCAGACTTCTTGCTTCCTTGTTCAT  648
      |||||||||||||||||||||||| |||||||||||||||||||||||| 
seq2  GAATTCTGACTAAATTATGTACTTTGCAGACTTCTTGCTTCCTTGTTCA-  649

seq1  TCCTTTGATGATACAGAATAGAAGAGTATTGCATATTTACTCCCAACTGC  698
      ||||||||||||||||||||||  ||||||||||||||||||||||||||
seq2  TCCTTTGATGATACAGAATAGA--AGTATTGCATATTTACTCCCAACTGC  697

seq1  TTTGTACCTGGTGAACAAACTAACCTTATGA-GTTTAAACATGGTCATAT  747
      |||||| ||||||| |||    ||||||||| ||||| ||||||||||||
seq2  TTTGTATCTGGTGACCAA--GTACCTTATGAGGTTTATACATGGTCATAT  745

seq1  CACAAG-AGGTTCAAGGAGGTACT-GACCTGCTTTT  781
      |||||| |||||| |||||| ||| ||| |||||||
seq2  CACAAGAAGGTTC-AGGAGGGACTGGACATGCTTTT  780