BAC Information

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BAC

Clone NameB6Ng01-069I13
Chromosome13 (Build37)
Map Location 17,317,616 - 17,508,475
singlet/doubletdoublet
Overlap gene5033411D12Rik
Upstream geneLOC665191
Downstream gene2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069I13.bB6Ng01-069I13.g
ACCDH887811DH887812
length1,078971
definitionDH887811|Mus musculus domesticus DNA, BAC clone: B6Ng01-069I13, 5' end.DH887812|Mus musculus domesticus DNA, BAC clone: B6Ng01-069I13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,507,364 - 17,508,475)(17,317,616 - 17,318,409)
sequence
gaattcagcatagaattcagcatagcgacacactattggcttattcaaac
atcagcagaaaaattacatgtacgtgcagggtgtcagagttctgtgagtt
gttgactcagttcagatagccctgttatgtcctcacattcctctttatct
ttatggtcaagctgttcccaggaatgttttaactacggggcatgcccagg
tttgtttttttttttattctcagccccaggcagcctctatgctcacaaac
aaccagcaatttctgagtactttatatgacttacaggtcttgaaatttca
tctttctttcaccagcatttgggtgcaacagaaagatcttgatgctatag
acagcatagtgtgtttgaagttagccctgtgcaacatagcaaggctttgt
ctttcaagaaagttttctttttactcttagagaaagatggtacatgcatg
atgttttattacttttctcaaatgtagttttacagtaaaattgaaaatgc
ttcaatgcttcaaacctttctaagcccacatctcaaaagtgcatgttcat
ttaactgataaggtaatacatagatatttctcttgaaaacaataatcaat
actttatatagcattaaggaacttttcttgccaatatttttgtgacaaca
tacggttgttacatggttgcatatgcaaatgctatgttcaagaatatttt
atttattataaaataaaaaactatttaaaataaaaaacaaaaataataat
acttaagaaattcaactgcagagtctattctcatatgaacaagtagaaat
aaagaaataactaggtatttttggggggagaggacaaaagcttagtcaca
tcttcattgcactgggtcactgaggaatctggagagccatttcagagcaa
tccctagaccattctactgcagtttgggagtgcaaaagaattgtgtgaag
tgatcacacccaaagcccacattacctctgactaaagcataagggcatac
attatcaatactggtggtagcatggtgagactatttaatcatcctcaaac
aacgtgagctctgtcctgttcccagctt
gaattccaaacatcacataaaagcaaaaactatatgcagctggcaaaacc
acacttctgctagaacacaagaaaaattatagtcagctgctgtggacaat
ctgaagcagtcccacaaccccacacctgggattaaaacaaaagcacattc
ctacttctgtggtttttaaagaaaccaaaattctcactacatacagacct
ataccatatggaaatgtagtagattcaacaatagatggcacaaacattga
ataaaaaaagctatagcagaataaaacatacatcaatactcaaattgaag
ggaaaggtagattagcagatggaataatacaatctataaaatatatattt
gctcttattttatcagtgtgatggtttttatatgcatggcccagggagtg
gcaatattaagaggcgtggtcttgttagagtatgtgtgtcactgtgggtg
tggattttaatatcctcattctagttgcctggaagctagtcctctcctag
tggccttcagatgaagatgtagaactctcagctcctcctgcaccatgcct
gcctggacgctcccatattgatgataatggactgaacctctggacctgta
agccagccccaattaaaggttatacttataagagctgtcttggtcccagt
gtctgttcacagcagtaaaatcctaactaaggcaatcagcttctatccat
tgatgaacaggtagttatcaaaaaagaaacaaatgatcaaaaccagaaaa
aatatacaacatccttccctatcaggaaatggaaaggaaaatgattccag
ccaagagggctaatatgaagcaaacaagtatttgcaaagatatgaaaaat
aaactgtacatagcaagtgcaaattgatcaatgcaaagtttctcaaagca
ctaaaaatagagagccatacgatccagctctgccacttctgggctattac
aaaggatctgagaaagtacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_17507364_17508475
seq2: B6Ng01-069I13.b_48_1125 (reverse)

seq1  AAGCTGGGGAACAGGGAACAGAGGCTCACTGTTGGTTTGAGGATGATTTA  50
      ||||| |||||||||  ||||| |||||| ||| ||||||||||||||  
seq2  AAGCT-GGGAACAGG--ACAGA-GCTCAC-GTT-GTTTGAGGATGATT--  42

seq1  AAATAAGTACTCACACATTGCTTACACACCAAGCTAATTGATAATAGTAA  100
      |||| ||| ||||| || ||| ||| |||||     ||||||||| || |
seq2  AAAT-AGT-CTCAC-CA-TGC-TAC-CACCA---GTATTGATAAT-GT-A  81

seq1  TGCCCCTATTGCTCTTAGTTCAGGAGTGTAATGCTGGGGCTTTGGGCTGT  150
      ||||| || |||| |||| ||| ||| ||||||   |||||||||| || 
seq2  TGCCCTTA-TGCT-TTAG-TCA-GAG-GTAATG--TGGGCTTTGGG-TG-  122

seq1  TGATCACTCTACCCAATTCTCTTTGCACTCCCAAAACTGCAGTAGAATGG  200
      ||||||||  || ||||||| ||||||||||| |||||||||||||||||
seq2  TGATCACTTCACACAATTCT-TTTGCACTCCC-AAACTGCAGTAGAATGG  170

seq1  TCTACGGAATTGGCTCTGAAATTGGCTCTCCAGATTTCCTCAGTGACCCA  250
      |||| |||  | ||||||||| |||||||||||| |||||||||||||||
seq2  TCTAGGGA--TTGCTCTGAAA-TGGCTCTCCAGA-TTCCTCAGTGACCCA  216

seq1  GTGCAATGAAGATGTGACTAAGCTTTTGTCCTCTCCCCCCAAAAATACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAATGAAGATGTGACTAAGCTTTTGTCCTCTCCCCCCAAAAATACCT  266

seq1  AGTTATTTCTTTATTTCTACTTGTTCATATGAGAATAGACTCTGCAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTTCTTTATTTCTACTTGTTCATATGAGAATAGACTCTGCAGTTG  316

seq1  AATTTCTTAAGTATTATTATTTTTGTTTTTTATTTTAAATAGTTTTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTTAAGTATTATTATTTTTGTTTTTTATTTTAAATAGTTTTTTAT  366

seq1  TTTATAATAAATAAAATATTCTTGAACATAGCATTTGCATATGCAACCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATAAATAAAATATTCTTGAACATAGCATTTGCATATGCAACCAT  416

seq1  GTAACAACCGTATGTTGTCACAAAAATATTGGCAAGAAAAGTTCCTTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAACCGTATGTTGTCACAAAAATATTGGCAAGAAAAGTTCCTTAAT  466

seq1  GCTATATAAAGTATTGATTATTGTTTTCAAGAGAAATATCTATGTATTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATATAAAGTATTGATTATTGTTTTCAAGAGAAATATCTATGTATTAC  516

seq1  CTTATCAGTTAAATGAACATGCACTTTTGAGATGTGGGCTTAGAAAGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCAGTTAAATGAACATGCACTTTTGAGATGTGGGCTTAGAAAGGTT  566

seq1  TGAAGCATTGAAGCATTTTCAATTTTACTGTAAAACTACATTTGAGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCATTGAAGCATTTTCAATTTTACTGTAAAACTACATTTGAGAAAA  616

seq1  GTAATAAAACATCATGCATGTACCATCTTTCTCTAAGAGTAAAAAGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAAAACATCATGCATGTACCATCTTTCTCTAAGAGTAAAAAGAAAA  666

seq1  CTTTCTTGAAAGACAAAGCCTTGCTATGTTGCACAGGGCTAACTTCAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTGAAAGACAAAGCCTTGCTATGTTGCACAGGGCTAACTTCAAAC  716

seq1  ACACTATGCTGTCTATAGCATCAAGATCTTTCTGTTGCACCCAAATGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTATGCTGTCTATAGCATCAAGATCTTTCTGTTGCACCCAAATGCTG  766

seq1  GTGAAAGAAAGATGAAATTTCAAGACCTGTAAGTCATATAAAGTACTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGAAAGATGAAATTTCAAGACCTGTAAGTCATATAAAGTACTCAG  816

seq1  AAATTGCTGGTTGTTTGTGAGCATAGAGGCTGCCTGGGGCTGAGAATAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCTGGTTGTTTGTGAGCATAGAGGCTGCCTGGGGCTGAGAATAAA  866

seq1  AAAAAAAACAAACCTGGGCATGCCCCGTAGTTAAAACATTCCTGGGAACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACAAACCTGGGCATGCCCCGTAGTTAAAACATTCCTGGGAACA  916

seq1  GCTTGACCATAAAGATAAAGAGGAATGTGAGGACATAACAGGGCTATCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGACCATAAAGATAAAGAGGAATGTGAGGACATAACAGGGCTATCTG  966

seq1  AACTGAGTCAACAACTCACAGAACTCTGACACCCTGCACGTACATGTAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGTCAACAACTCACAGAACTCTGACACCCTGCACGTACATGTAAT  1016

seq1  TTTTCTGCTGATGTTTGAATAAGCCAATAGTGTGTCGCTATGCTGAATTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGCTGATGTTTGAATAAGCCAATAGTGTGTCGCTATGCTGAATTC  1066

seq1  TATGCTGAATTC  1112
      ||||||||||||
seq2  TATGCTGAATTC  1078

seq1: chr13_17317616_17318409
seq2: B6Ng01-069I13.g_256_1041

seq1  ACTACATACAGACCTATACCATATGGAAATGTAGTAGATTCAACAATAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATACAGACCTATACCATATGGAAATGTAGTAGATTCAACAATAGA  50

seq1  TGGCACAAACATTGAATAAAAAAAGCTATAGCAGAATAAAACATACATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACAAACATTGAATAAAAAAAGCTATAGCAGAATAAAACATACATCA  100

seq1  ATACTCAAATTGAAGGGAAAGGTAGATTAGCAGATGGAATAATACAATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCAAATTGAAGGGAAAGGTAGATTAGCAGATGGAATAATACAATCT  150

seq1  ATAAAATATATATTTGCTCTTATTTTATCAGTGTGATGGTTTTTATATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATATATATTTGCTCTTATTTTATCAGTGTGATGGTTTTTATATGC  200

seq1  ATGGCCCAGGGAGTGGCAATATTAAGAGGCGTGGTCTTGTTAGAGTATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCCAGGGAGTGGCAATATTAAGAGGCGTGGTCTTGTTAGAGTATGT  250

seq1  GTGTCACTGTGGGTGTGGATTTTAATATCCTCATTCTAGTTGCCTGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACTGTGGGTGTGGATTTTAATATCCTCATTCTAGTTGCCTGGAAG  300

seq1  CTAGTCCTCTCCTAGTGGCCTTCAGATGAAGATGTAGAACTCTCAGCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCCTCTCCTAGTGGCCTTCAGATGAAGATGTAGAACTCTCAGCTCC  350

seq1  TCCTGCACCATGCCTGCCTGGACGCTCCCATATTGATGATAATGGACTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCACCATGCCTGCCTGGACGCTCCCATATTGATGATAATGGACTGA  400

seq1  ACCTCTGGACCTGTAAGCCAGCCCCAATTAAAGGTTATACTTATAAGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGGACCTGTAAGCCAGCCCCAATTAAAGGTTATACTTATAAGAGC  450

seq1  TGTCTTGGTCCCAGTGTCTGTTCACAGCAGTAAAATCCTAACTAAGGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGGTCCCAGTGTCTGTTCACAGCAGTAAAATCCTAACTAAGGCAA  500

seq1  TCAGCTTCTATCCATTGATGAACAGGTAGTTATCAAAAAAGAAACAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTCTATCCATTGATGAACAGGTAGTTATCAAAAAAGAAACAAATG  550

seq1  ATCAAAACCAGAAAAAATATACAACATCCTTCCCTATCAGGGAAATGGAA  600
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATCAAAACCAGAAAAAATATACAACATCCTTCCCTATCA-GGAAATGGAA  599

seq1  AGGAAAATGATTCCAGCCAAGAGGGCTAATATGAAGCAAACAAGTATTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATGATTCCAGCCAAGAGGGCTAATATGAAGCAAACAAGTATTTG  649

seq1  CAAAGATATGAAAAATAAAACTGTACATAGCAAGTGCAAATTGATCAATG  700
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CAAAGATATGAAAAAT-AAACTGTACATAGCAAGTGCAAATTGATCAATG  698

seq1  CAGAAGTTTCTCAAAGCACTAAAAATAGAAGAGCCATACGATCCAGCTCT  750
      || ||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CA-AAGTTTCTCAAAGCACTAAAAATAG-AGAGCCATACGATCCAGCTCT  746

seq1  GCCACTTCTGGGCATATACCAAAGGACTCTAGAGTAAAGTACAC  794
      ||||||||||||| |||  ||||||| ||| ||| |||||||||
seq2  GCCACTTCTGGGC-TATTACAAAGGA-TCT-GAG-AAAGTACAC  786