BAC Information

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BAC

Clone NameB6Ng01-070P17
Chromosome13 (Build37)
Map Location 100,277,399 - 100,403,636
singlet/doubletdoublet
Overlap geneMtap1b
Upstream geneLOC100039854, LOC218501, Tmem174, Tmem171, LOC669675, Fcho2, Tnpo1, EG432798, LOC100039771, 1700024P04Rik, LOC100039967, LOC100039797, Zfp366, Ptcd2, Mrps27
Downstream geneCartpt, Mccc2, Bdp1, Serf1, Smn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838, Naip1, Gtf2h2, Ocln, LOC667861, Marveld2, Rad17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070P17.bB6Ng01-070P17.g
ACCDH888814DH888815
length1,2411,145
definitionDH888814|Mus musculus domesticus DNA, BAC clone: B6Ng01-070P17, 5' end.DH888815|Mus musculus domesticus DNA, BAC clone: B6Ng01-070P17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,402,471 - 100,403,636)(100,277,399 - 100,278,568)
sequence
gaattcagaaacaggggtgcatggtccatgtttctccacggggcatctgc
acaccaggcaagaagggggaagctgaacccaggaggagcaggatctgatg
tgattgggagcatgtgccaagtagtggaggggcaggaaaagagaaaaggc
cttcttcaggagtcttggtgtcaatgttgccgctcttttaggtgaagccc
ttccccatggtgatctccagtgaagcaggtcactgagacaatctttgctt
attcatatttctttattggggggtgaatgtgaacacatacactttattca
gggcaaacgagggtaaagggtatgagaatatccaagaagggaaggtcatt
ggttggaagctaaagctatctagatacctcgatagcatggagaagaacac
tatgatacatgactgaatgcctgcggccctctcaattggtggctgtggtt
atgtgttccagagcaggcattgaaggctgggtaggggcagttccactcca
ccaatctcagatctctgagatttgtagggtgtgagcattcccacttcacc
agttcttatgcctgtctggtagggcggttccacgtgccccacaaaggatg
gataggatggatatacgacatgccgtctgttagcacctacagctactggc
tgtcatttccccttaattaagccctaccttctgttttctcttatagaaag
gggcctgtagcttcttctggaacacacacagaaaactgtctctgtacagc
gtagtaggtgtgatggccgccttggaggtgcactccgtggctgtccttgt
aaaagaggctactgtgggaagcagttgatggacatcttctaatcaccact
cctctgtgttcaccatagcttcctgtctagttatagctcccctgggctgc
tgccagccatcagctaagcatcatgggaagggccacaagaagtccatttt
ggcccaatgccaaacacattcaatctacaacccttgctcaatggctcttt
cagcttaatcagactgacttagagctctgctgcgatccgagaagctctgg
gcaactttctgcctctctcctgttgcaaaatgtcaagctgcacttcagcc
tgagggggtctccctcttccctcaagttctctcaacctttatcctccata
gaatgctcccatagtaatcttcccaatccttttgtaaaattaggtaattc
catagctatcgtatcatatatgcttccatgggggagacgtt
gaattcaataggagccagaatcttctcttattatgtccaaatgggaccag
ataggaggaattcatagctcagaaaggagggagagatgaatctgcatcat
cgaagcccagagaggtgggcgggacacatcctcgcagagggaacagcttt
acatatgaccggtgcttgcgtccttacctttgattctcttattctgaaag
aaaggctgtttttacagcagcttggaacatcaggttctttcccacactaa
ggagctgaaaacatcttttgtgtctgaaacaccaagtgtcctttctcttt
ctagtgaagggaggtggaggattgtaggagcacccagtctatactcagaa
ctttgagtaaaattaatattgaagtagtctgtaatcccttgaggtcagag
aacactgaaacccaaagggaagtaagctagactttcaaacctctcataag
aacccacaccatcaataatccacatggtgattacttaaattctacttttc
caagttgtggctgctggctcaagtcattgacatacatacaaagaaacttc
tagcaaggagaggaaattcttttttctttccatgccagaccaaagctttt
tccagacaacggtcactcccctcatcctgtcaagagctaggctaacactg
agtagaaacctcacctggaacttcaggagagaatcttgcagagtgtcgag
atacgaaaagtttgagttcctggtccaagttgcactcaatcaggtttgtg
tcccacgatcggatccctgtggaggaaaaggaggacagttggcaggcttc
tgggagtcacctcagagtggtttggaaagcacccccatggacgtttctct
cgggccttttgatggcaggtaccttggctagcggtggatgcccacaagtg
ggaaagggaaggccctcccctggacacagggaggaagaactaactgtgag
cctgaagttctgccccctcagaagggtacgtgcagcagctggggctgaag
caacagcagacttcagcagctgggagcacagaagatgacagtctgctaag
agcccagactacatcagcttctcagctcactaagtgcaatgtcagattgc
agttggacggccgctgccattcagccttgcttcctgtttccaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_100402471_100403636
seq2: B6Ng01-070P17.b_142_1287 (reverse)

seq1  AACGT-TCCCCCATGGAAGCAATAAATGAATAAACGAATAAGTTTTAAAA  49
      ||||| |||||||||||||| ||| |||   | ||||   || |     |
seq2  AACGTCTCCCCCATGGAAGC-ATATATG---ATACGA--TAGCT-----A  39

seq1  TGTAAATGTAAAACTAATATTTTACAAAAGATATGGGGGAGGATTTACTA  99
      || || |    | |||  ||||||||||||  || ||| ||   ||||||
seq2  TGGAATT----ACCTA--ATTTTACAAAAG-GATTGGGAAG--ATTACTA  80

seq1  TGGGAGCA-TCTATGGAGGATAAAGGTTGAGAGAACATGA-GGAAGA-GG  146
      |||||||| ||||||||||||||||||||||||||| ||| |||||| ||
seq2  TGGGAGCATTCTATGGAGGATAAAGGTTGAGAGAACTTGAGGGAAGAGGG  130

seq1  AGACACCCTCAGGCTGAAGTGCAGGCTTGACA-TCTGCAACAGGAGAGAG  195
      |||| |||||||||||||||||| |||||||| | |||||||||||||||
seq2  AGACCCCCTCAGGCTGAAGTGCA-GCTTGACATTTTGCAACAGGAGAGAG  179

seq1  GCAAGAAAAGTTTGCCCAGAGCTTCTCGGATCGCAGCAGAGCTCTAAGTC  245
      || |||||   |||||||||||||||||||||||||||||||||||||||
seq2  GC-AGAAA--GTTGCCCAGAGCTTCTCGGATCGCAGCAGAGCTCTAAGTC  226

seq1  AGTCTTGATTAAGCTGAAAGAGCCATTGAGCAAGGGTTGTAGATTGAATG  295
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTC-TGATTAAGCTGAAAGAGCCATTGAGCAAGGGTTGTAGATTGAATG  275

seq1  TGTTTGGCATTGGGCCAAAATGGACTTCTTGTGGCCCTTCCCATGATGCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGCATTGGGCCAAAATGGACTTCTTGTGGCCCTTCCCATGATGCT  325

seq1  TAGCTGATGGCTGGCAGCAGCCCAGGGGAGCTATAACTAGACAGGAAGCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGATGGCTGGCAGCAGCCCAGGGGAGCTATAACTAGACAGGAAGCT  375

seq1  ATGGTGAACACAGAGGAGTGGTGATTAGAAGATGTCCATCAACTGCTTCC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGAACACAGAGGAGTGGTGATTAGAAGATGTCCATCAACTGCTTCC  425

seq1  CACAGTAGCCTCTTTTACAAGGACAGCCACGGAGTGCACCTCCAAGGCGG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAGCCTCTTTTACAAGGACAGCCACGGAGTGCACCTCCAAGGCGG  475

seq1  CCATCACACCTACTACGCTGTACAGAGACAGTTTTCTGTGTGTGTTCCAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACACCTACTACGCTGTACAGAGACAGTTTTCTGTGTGTGTTCCAG  525

seq1  AAGAAGCTACAGGCCCCTTTCTATAAGAGAAAACAGAAGGTAGGGCTTAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCTACAGGCCCCTTTCTATAAGAGAAAACAGAAGGTAGGGCTTAA  575

seq1  TTAAGGGGAAATGACAGCCAGTAGCTGTAGGTGCTAACAGACGGCATGTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGGAAATGACAGCCAGTAGCTGTAGGTGCTAACAGACGGCATGTC  625

seq1  GTATATCCATCCTATCCATCCTTTGTGGGGCACGTGGAACCGCCCTACCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATCCATCCTATCCATCCTTTGTGGGGCACGTGGAACCGCCCTACCA  675

seq1  GACAGGCATAAGAACTGGTGAAGTGGGAATGCTCACACCCTACAAATCTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGCATAAGAACTGGTGAAGTGGGAATGCTCACACCCTACAAATCTC  725

seq1  AGAGATCTGAGATTGGTGGAGTGGAACTGCCCCTACCCAGCCTTCAATGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCTGAGATTGGTGGAGTGGAACTGCCCCTACCCAGCCTTCAATGC  775

seq1  CTGCTCTGGAACACATAACCACAGCCACCAATTGAGAGGGCCGCAGGCAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTGGAACACATAACCACAGCCACCAATTGAGAGGGCCGCAGGCAT  825

seq1  TCAGTCATGTATCATAGTGTTCTTCTCCATGCTATCGAGGTATCTAGATA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCATGTATCATAGTGTTCTTCTCCATGCTATCGAGGTATCTAGATA  875

seq1  GCTTTAGCTTCCAACCAATGACCTTCCCTTCTTGGATATTCTCATACCCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAGCTTCCAACCAATGACCTTCCCTTCTTGGATATTCTCATACCCT  925

seq1  TTACCCTCGTTTGCCCTGAATAAAGTGTATGTGTTCACATTCACCCCCCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCTCGTTTGCCCTGAATAAAGTGTATGTGTTCACATTCACCCCCCA  975

seq1  ATAAAGAAATATGAATAAGCAAAGATTGTCTCAGTGACCTGCTTCACTGG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAAATATGAATAAGCAAAGATTGTCTCAGTGACCTGCTTCACTGG  1025

seq1  AGATCACCATGGGGAAGGGCTTCACCTAAAAGAGCGGCAACATTGACACC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCACCATGGGGAAGGGCTTCACCTAAAAGAGCGGCAACATTGACACC  1075

seq1  AAGACTCCTGAAGAAGGCCTTTTCTCTTTTCCTGCCCCTCCACTACTTGG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCCTGAAGAAGGCCTTTTCTCTTTTCCTGCCCCTCCACTACTTGG  1125

seq1  CACATGCTCCCAATCACATCA  1166
      |||||||||||||||||||||
seq2  CACATGCTCCCAATCACATCA  1146

seq1: chr13_100277399_100278568
seq2: B6Ng01-070P17.g_66_1210

seq1  GAATTCAATAGGAGCCAGAATCTTCTCTTATTATGTCCAAATGGGACCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAGGAGCCAGAATCTTCTCTTATTATGTCCAAATGGGACCAG  50

seq1  ATAGGAGGAATTCATAGCTCAGAAAGGAGGGAGAGATGAATCTGCATCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAGGAATTCATAGCTCAGAAAGGAGGGAGAGATGAATCTGCATCAT  100

seq1  CGAAGCCCAGAGAGGTGGGCGGGACACATCCTCGCAGAGGGAACAGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGCCCAGAGAGGTGGGCGGGACACATCCTCGCAGAGGGAACAGCTTT  150

seq1  ACATATGACCGGTGCTTGCGTCCTTACCTTTGATTCTCTTATTCTGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGACCGGTGCTTGCGTCCTTACCTTTGATTCTCTTATTCTGAAAG  200

seq1  AAAGGCTGTTTTTACAGCAGCTTGGAACATCAGGTTCTTTCCCACACTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTGTTTTTACAGCAGCTTGGAACATCAGGTTCTTTCCCACACTAA  250

seq1  GGAGCTGAAAACATCTTTTGTGTCTGAAACACCAAGTGTCCTTTCTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGAAAACATCTTTTGTGTCTGAAACACCAAGTGTCCTTTCTCTTT  300

seq1  CTAGTGAAGGGAGGTGGAGGATTGTAGGAGCACCCAGTCTATACTCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGAAGGGAGGTGGAGGATTGTAGGAGCACCCAGTCTATACTCAGAA  350

seq1  CTTTGAGTAAAATTAATATTGAAGTAGTCTGTAATCCCTTGAGGTCAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGTAAAATTAATATTGAAGTAGTCTGTAATCCCTTGAGGTCAGAG  400

seq1  AACACTGAAACCCAAAGGGAAGTAAGCTAGACTTTCAAACCTCTCATAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGAAACCCAAAGGGAAGTAAGCTAGACTTTCAAACCTCTCATAAG  450

seq1  AACCCACACCATCAATAATCCACATGGTGATTACTTAAATTCTACTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACACCATCAATAATCCACATGGTGATTACTTAAATTCTACTTTTC  500

seq1  CAAGTTGTGGCTGCTGGCTCAAGTCATTGACATACATACAAAGAAACTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTGTGGCTGCTGGCTCAAGTCATTGACATACATACAAAGAAACTTC  550

seq1  TAGCAAGGAGAGGAAATTCTTTTTTCTTTCCATGCCAGACCAAAGCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGGAGAGGAAATTCTTTTTTCTTTCCATGCCAGACCAAAGCTTTT  600

seq1  TCCAGACAACGGTCACTCCCCTCATCCTGTCAAGAGCTAGGCTAACACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACAACGGTCACTCCCCTCATCCTGTCAAGAGCTAGGCTAACACTG  650

seq1  AGTAGAAACCTCACCTGGAACTTCAGGAGAGAATCTTGCAGAGTGTCGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAACCTCACCTGGAACTTCAGGAGAGAATCTTGCAGAGTGTCGAG  700

seq1  ATACGAAAAGTTTGAGTTCCTGGTCCAAGTTGCACTCAATCAGGTTTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGAAAAGTTTGAGTTCCTGGTCCAAGTTGCACTCAATCAGGTTTGTG  750

seq1  TCCCACGATCGGATCCCTGTGGAGGAAAAGGAGGACAGTTGGCAGGCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACGATCGGATCCCTGTGGAGGAAAAGGAGGACAGTTGGCAGGCTTC  800

seq1  TGGGAGTCACCTCAGAGTGGTTTGGAAAGCACCCCCATGGACGTTTCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTCACCTCAGAGTGGTTTGGAAAGCACCCCCATGGACGTTTCTCT  850

seq1  CGGGCCTTTTGATGGCAGGTACCTTGGCTAGCGGTGGATGCCCACAAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCCTTTTGATGGCAGGTACCTTGGCTAGCGGTGGATGCCCACAAGTG  900

seq1  GGAAAGGGAAGGCCCCTCCCCTGGGACACAAGGGAGGAAGAACTAACTGT  950
      |||||||||||| ||||||||| |||||| ||||||||||||||||||||
seq2  GGAAAGGGAAGG-CCCTCCCCT-GGACAC-AGGGAGGAAGAACTAACTGT  947

seq1  GAGCCTGAAGTTCTGCCCCCCTCAGAAAGGGTACGTGCAGCAAGGCTGGG  1000
      ||||||||||||||| ||||||||| ||||||||||||||||  ||| ||
seq2  GAGCCTGAAGTTCTG-CCCCCTCAG-AAGGGTACGTGCAGCA--GCT-GG  992

seq1  GGCTGAAAGCAAACAGCAGACTCAAGGCAGGCTGGGAGGCACAGAAGATG  1050
      ||||| |||| |||||||||||  | ||| ||||||| ||||||||||||
seq2  GGCTG-AAGC-AACAGCAGACTTCA-GCA-GCTGGGA-GCACAGAAGATG  1037

seq1  ACAGTTCTGGCTAAGAGGCCCCAGACTACCATCAGCTTCTTCAGCTCCAC  1100
      |||| ||| ||||||||  ||||||||| |||||||||| |||||| |||
seq2  ACAG-TCT-GCTAAGAG--CCCAGACTA-CATCAGCTTC-TCAGCT-CAC  1080

seq1  TAAGTGGCCAATGTCAGA-TGCAGGTGGGACGGGCGGCTGCCATTCAAGC  1149
      ||||||  |||||||||| |||| || |||| ||| |||||||||| |||
seq2  TAAGTG--CAATGTCAGATTGCA-GTTGGAC-GGCCGCTGCCATTC-AGC  1125

seq1  CTGGCTCTCTGTTTTCCAAAG  1170
      || |||  ||| |||||||||
seq2  CTTGCTTCCTG-TTTCCAAAG  1145