BAC Information

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BAC

Clone NameB6Ng01-071C02
Chromosome6 (Build37)13 (Build37)
Map Location 18,835,382 - 18,835,9688,680,022 - 8,680,807
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071C02.bB6Ng01-071C02.g
ACCDH888915DH888916
length587784
definitionDH888915|Mus musculus domesticus DNA, BAC clone: B6Ng01-071C02, 5' end.DH888916|Mus musculus domesticus DNA, BAC clone: B6Ng01-071C02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,382 - 18,835,968)(8,680,022 - 8,680,807)
sequence
gaattctttgttagttctgagccccattttttaatggggttatttgattt
gctgaagtccaccttcttgagttctttatatatgttggatattattcccc
tatctgatttgggataggtaaagatcctttcccaatctgttggtggtctt
tttgtcttattgacggtgtcttttgccttgcacaaactttggagtttcat
taagtcccatttgtcgattctccatcttacagcacaagccattggtgttc
tgttcaggaatttttcccctgtgcccatatcttctaggcttttccccact
ttctcctctataaatttcactgtctctggtttaatgtgaagttccttgat
ccacttaaatttgaccttagcacaaggagataagtatggatcgattcaca
ttcttctacaccataacaaccagttgtgccagcaccaattgttgaaaatg
ctgtctttcttcccctggatggttttagctcccttgtcgaagatcaggtg
accataggtgtgtgggttcatttctggatcttcaattctattccgttggt
ctacttgtctgtctctataccaaggccatgcagttat
gaattccatattcatcttctgaggaacagagcaagaatggagcacaaata
aaaagaaaaacacagaataaccagaaggggaatatcaagtggttgcttat
ggacacagcaagcgctgccacttaaaatgtttcctccgtgaattatgtat
gaactgcggctttgtgctctcattatttctgggtttagcacctgtgagga
gaccttgtcggttatctcccatgccggaaaaaaaagacttctcatccatc
aaaccaggtgtcgcagagccgctcctttgatacaaaagaatgagttacta
atgggccggagagcatgctcagcccaatccaaacagggagataaatagat
tcttctatctattaattgcaaagggttcattggcatcttacttccttttt
agaagtagggggaggatattgaatacatttgctgaataaaaaaattacca
tatttatatccagtgaaacccttcataatgttgataactggatacataac
tgaagacatccctatctctctgtctctctgtctctctgtctctctctgtc
tcttgtctctctgtcactctgtctctctgtctctctgtctctctgtcttt
ctctatgtctcactctgtatctgtctctctctctgtctctctctgtcact
ctctgacactctgtctctctctctctgtctctctctgtctctctctctct
gtctctctctgtctctgtctctctctcagtctgtgagtctctctctctgt
cggattctctctcgaccgctctctctctcgctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835382_18835968
seq2: B6Ng01-071C02.b_40_626 (reverse)

seq1  AAAACTGCATGGTACTGGTATAGAGACAGACAAGTAGACCAATGGAATAG  50
      | ||||||||||   ||||||||||||||||||||||||||| |||||||
seq2  ATAACTGCATGGCCTTGGTATAGAGACAGACAAGTAGACCAACGGAATAG  50

seq1  AATTGAAGACCCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCG  100
      ||||||||| ||||| |||||||||||||||||||||||| |||||||||
seq2  AATTGAAGATCCAGAAATGAACCCACACACCTATGGTCACCTGATCTTCG  100

seq1  ACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAAT  150
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACAAGGGAGCTAAAACCATCCAGGGGAAGAAAGACAGCATTTTCAACAAT  150

seq1  TGGTGCTGGCACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCC  200
      |||||||||||||||||||||||||  |||||||||||||||||||||||
seq2  TGGTGCTGGCACAACTGGTTGTTATGGTGTAGAAGAATGTGAATCGATCC  200

seq1  ATACTTATCTCCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTC  250
      |||||||||||| ||| |||||||||||| ||||||||||||||||||||
seq2  ATACTTATCTCCTTGTGCTAAGGTCAAATTTAAGTGGATCAAGGAACTTC  250

seq1  ACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGC  300
      |||| |||||||||||| ||||| ||||||||||||||||||||||||||
seq2  ACATTAAACCAGAGACAGTGAAATTTATAGAGGAGAAAGTGGGGAAAAGC  300

seq1  CTTGAAGATATGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC  350
      || ||||||||||||| ||||||||| ||||||||||||||| |||||||
seq2  CTAGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACACCAATGGC  350

seq1  -TGTGCTGTGAGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAA  399
       |||||||| || | ||||||||||||||||||| |||||||||||||||
seq2  TTGTGCTGTAAGATGGAGAATCGACAAATGGGACTTAATGAAACTCCAAA  400

seq1  GTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACA  449
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACA  450

seq1  GATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATC  499
      |||||||||||||||||||||||||| ||||||||||||||| |||||||
seq2  GATTGGGAAAGGATCTTTACCTATCCCAAATCAGATAGGGGAATAATATC  500

seq1  CAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACC  549
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CAACATATATAAAGAACTCAAGAAGGTGGACTTCAGCAAATCAAATAACC  550

seq1  CCATTAATAAATGGGGCTCAGAACTGAACAAAGAATTC  587
      ||||||| ||||||||||||||||| ||||||||||||
seq2  CCATTAAAAAATGGGGCTCAGAACT-AACAAAGAATTC  587

seq1: chr13_8680022_8680807
seq2: B6Ng01-071C02.g_67_850

seq1  GAATTCCATATTCATCTTCTGAGGAACAGAGCAAGAATGGAGCACAAAGA  50
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GAATTCCATATTCATCTTCTGAGGAACAGAGCAAGAATGGAGCACAAATA  50

seq1  AAAAGAAAAACACAGAAGAACCAGAAGGGGAATATCAAGTGGTTGCTTAT  100
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAACACAGAATAACCAGAAGGGGAATATCAAGTGGTTGCTTAT  100

seq1  GGACACAGCAAGCGCTGCCACTTAAAATGTTTCCTCCGTGAATTATGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACAGCAAGCGCTGCCACTTAAAATGTTTCCTCCGTGAATTATGTAT  150

seq1  GAGCTGCGGCTTTGTGCTCTCATTATTTCTGGGTTTAGCACCAATGAGGA  200
      || |||||||||||||||||||||||||||||||||||||||  ||||||
seq2  GAACTGCGGCTTTGTGCTCTCATTATTTCTGGGTTTAGCACCTGTGAGGA  200

seq1  GACCTTGTCAGTTATCTCCCATGCAGGAAAGAAAAGACTTCTCATCGATC  250
      ||||||||| |||||||||||||| ||||| ||||||||||||||| |||
seq2  GACCTTGTCGGTTATCTCCCATGCCGGAAAAAAAAGACTTCTCATCCATC  250

seq1  AGACCAGGTGTCGCAGAGCCGCTCCTTTGATACAAAAGAATGAGTTACTA  300
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGGTGTCGCAGAGCCGCTCCTTTGATACAAAAGAATGAGTTACTA  300

seq1  ATGGGCCGGAGAGCATGCTCAGCCCAATCCAAACAGGGAGATAAATAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCCGGAGAGCATGCTCAGCCCAATCCAAACAGGGAGATAAATAGAT  350

seq1  TCTTCTATCTATTAATTGCAAAGGGTTCATTGGCATCTTACTTCCTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTATCTATTAATTGCAAAGGGTTCATTGGCATCTTACTTCCTTTTT  400

seq1  AGAAGTAGGGGGAGGATATTGAATACATTTGCTGAATAAAAAAATTACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAGGGGGAGGATATTGAATACATTTGCTGAATAAAAAAATTACCA  450

seq1  TATTTATATCCAGTGAAACCCTTCATAATGTTGATGACTGGATACATAAC  500
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TATTTATATCCAGTGAAACCCTTCATAATGTTGATAACTGGATACATAAC  500

seq1  TAATGACATCCCTATCTCTCTGTCTCTCTGTCTCTCTGTCTCTCTCTGTC  550
      | | ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACATCCCTATCTCTCTGTCTCTCTGTCTCTCTGTCTCTCTCTGTC  550

seq1  TCTTGTCTCTCTGTCACTCTGTCTCTCTGTCTCTCTGTCTCTCTGTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCTCTCTGTCACTCTGTCTCTCTGTCTCTCTGTCTCTCTGTCTTT  600

seq1  CTCTATGTCTCTCTCTGTCTCTGTCTCTCTCTCTGTCTCTCTCTGTCTCT  650
      ||||||||||| |||||| |||||||||||||||||||||||||||| ||
seq2  CTCTATGTCTCACTCTGTATCTGTCTCTCTCTCTGTCTCTCTCTGTCACT  650

seq1  CTCTGTCTCTCTGTCTCTCTCTCTCTGTCTCTCTCTGTCTCTCTCTCTCT  700
      ||||| | ||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACACTCTGTCTCTCTCTCTCTGTCTCTCTCTGTCTCTCTCTCTCT  700

seq1  GTCTCTCTCTGTCTCTGTCTCTCTCTCTGTCTGTCTGTCTCTCTCTCTGT  750
      ||||||||||||||||||||||||||| ||||||  ||||||||||||||
seq2  GTCTCTCTCTGTCTCTGTCTCTCTCTCAGTCTGTGAGTCTCTCTCTCTGT  750

seq1  CTGCTTCTCTCTCTATCTGTCTCTCTCTCTCTCTCT  786
      | | ||||||||| | |  |||||||||| ||||  
seq2  CGGATTCTCTCTCGACCGCTCTCTCTCTCGCTCT--  784