BAC Information

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BAC

Clone NameB6Ng01-071G23
Chromosome13 (Build37)
Map Location 9,896,177 - 10,064,707
singlet/doubletdoublet
Overlap geneChrm3
Upstream geneEG382723, LOC100039655, Idi2, Gtpbp4, LOC667721, Larp5, EG667727, LOC100039719, Dip2c, LOC666986, Zmynd11, LOC100039604
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071G23.bB6Ng01-071G23.g
ACCDH889137DH889138
length1,1801,157
definitionDH889137|Mus musculus domesticus DNA, BAC clone: B6Ng01-071G23, 5' end.DH889138|Mus musculus domesticus DNA, BAC clone: B6Ng01-071G23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,063,491 - 10,064,707)(9,896,177 - 9,897,342)
sequence
gaattcaaagataaagtagcataccccagccatccaaaatgccaatatgg
taaaacaaaatttgcagctccattgaaataatctttatcaaaataaaatg
ctgatgttttcatgccattcaaccccaaactgccatggactgaacaggaa
ctcaatatgacaatatttcaggttactttaatagtttgttactctagtgc
ccacccacttcctagtcaagggtgtttatctataggtatttggaaaacct
gaatgtttttttttctatctttaaaatattctctattaaattatttctcc
tgagcttatatataaaatgcataaatagacatcacttgaagagaaaataa
attattgcatactttctgttggagaccatgtcctcatgatcaacattttg
aatcttctaataaaatgaaagcaaaaagaaattttttggtcttttggttt
tcctcaggaacgtggttttttttcctgtatgagtaaaactttcttctatt
gagactgaagaaataccacaaaatggcaactgttcttccagagggccaga
gttcctaatccccaaattcagaggcttataactacctctaactccaagtt
catggtatctggtcccctcttctggcctctgcaggtacccatacattggc
atacatgccaacaaacatatacacataaataaaaagaaaataaatctttt
ctttaaaaaaaacaaaaagataaaaacttccttcagtggcagaaaatagt
gtgtcgagaagcataacctaattgaaattttctatgcctaaactcatatc
caagttggctttgagtatatgtctatttaaggatatgtgtccatcaattg
tggcgtgggactgtgcatgtttgaaaattttaaataaccattgtcctgat
tcaaggaacccaataaaagatgagtcaggtgaaggactgaccatgggtac
aaagtcctctgtgtagatactgagatgttctgggacatagtgagttctag
tctagagtaccacagtagaaagttcctgcatactcctgtaacaatccacc
tttggaggaattagaagatgaagtcagtgggacatgtaaaggtcggatgt
ccctccagtaagctcgtcagtcaccttcgttagggtgccaagtccagctc
caggccactaactgaatccagccgtttcag
gaattcagttctctgcagatttatggagcatcccctttacctttggcatc
aggtgccgtgcatggcatgttttctctcatatgcagaatccagacttttg
aaaaaaaaaaaaaagaagcacacaaagaaatatgtccatgacacatgagt
gtggaaaagtcagagtgaaacccattatttcaaacaatgaataaactgat
aaatgagcttaaaaatcttgtgtgtttttgatctgtggttggttgactct
gggaaggctgagcccagggatacaggggactgaccagatcagtgtaatca
ggaaataccctgtaagtgtcaaaccatcgatgccactactgggaatactc
ttcattcaaagccagataaaaatgactgatatgacaaacagcaaggactt
gcaggctggtgcagctgccactcattagcatacaacagggcaactggtta
tctgtccctgggaggctgcagtgttctcatgggtaaaatgaggacacaga
aggacatgggctcctctccagctataattctgcagaattatagctaggtg
cctctgaatcccctatctgcactgaactgcctgtcttaattttccagctc
cctgaccacctgtaggcatgagggcagtccttttcagcctcctatttctg
caggtctagaacattagaaatggcctagttcttcttagcccttctaggaa
aagcaatgtatggggaccgagagatagctaagaaggtaaatgtgattgaa
acacagacctgacgtctaggaacgtacaaaggaaagggcagaactgactc
ctgaaaactgccttctgatcctcatgtgtgctttttggcatgggcacacc
tgagcacagacacacacacacacacacacacacacacactcactcactca
ctcacacttgctaaaggttaaaaaacagagaagtggtagaattctagtgt
gaagcttgatcttaaacagttcacttgaaatagttactcaaagggcaaag
aagcagatgggtgtatgtgagttccaagccagtgggctggaagcctgagg
acttaaagcaattgctggagttggaatctttatggaaacgagacagagtc
tgactgaatgtgtggcctgatagatgaaatacctgggacctggtgactgg
gatcctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_10063491_10064707
seq2: B6Ng01-071G23.b_46_1225 (reverse)

seq1  CTGAAACAGCTAGGATTCAGTTTTAAGTAGGCCACTTGGAGCTGAGACTG  50
      ||||||| ||| ||||||||||   ||| ||||   |||||||| |||| 
seq2  CTGAAACGGCT-GGATTCAGTT---AGT-GGCC---TGGAGCTG-GACT-  40

seq1  TGGCAACTCCTAACGAAGTGTGAACCTGACAGAGCTATACCTGTGACGGG  100
      |||||   |||||||||| ||||  ||||| ||||| || ||| ||  ||
seq2  TGGCA--CCCTAACGAAG-GTGA--CTGAC-GAGCT-TA-CTG-GA--GG  79

seq1  GCCATACTGTACCTTACATGTCCCACTGACTTCATCTTCTATATTCCTCC  150
      | ||| | |  | |||||||||||||||||||||||||||| ||||||||
seq2  GACAT-CCGACCTTTACATGTCCCACTGACTTCATCTTCTA-ATTCCTCC  127

seq1  AAAAGTGGATTTTGTTTACAGGAGTATGCAGGAACTTTTCTACTGTGTTA  200
      ||| |||||||    |||||||||||||||||||| ||||||||||| ||
seq2  AAAGGTGGATT---GTTACAGGAGTATGCAGGAAC-TTTCTACTGTGGTA  173

seq1  CTTCTAAGAACTAGAACTCACTATGTTCCAAGAAACATCTTCAGTATCTA  250
      | ||||   ||||||||||||||||| |||   |||||| ||||||||||
seq2  C-TCTA--GACTAGAACTCACTATGTCCCA--GAACATC-TCAGTATCTA  217

seq1  CCACAGAGGACTTTGTACCCATGGTCAGTCCTTCACCTGAACTCATCTTT  300
       |||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  -CACAGAGGACTTTGTACCCATGGTCAGTCCTTCACCTG-ACTCATCTTT  265

seq1  TATTGGGTTCCTTGAATCAGGGACAATGGTTATTTAAAATTTTCAAACAT  350
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TATTGGGTTCCTTGAATCA-GGACAATGGTTATTTAAAATTTTCAAACAT  314

seq1  GCACAGTTCCCACGCCACAATTGATGGACACATATCCTTAAATAGACATA  400
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAG-TCCCACGCCACAATTGATGGACACATATCCTTAAATAGACATA  363

seq1  TACTCAAAGCCAACTTGGATATGAGTTTAGGCATAGAAAATTTCAATTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAAAGCCAACTTGGATATGAGTTTAGGCATAGAAAATTTCAATTAG  413

seq1  GTTATGCTTCTCGACACACTATTTTCTGCCACTGAAGGAAGTTTTTATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGCTTCTCGACACACTATTTTCTGCCACTGAAGGAAGTTTTTATCT  463

seq1  TTTTGTTTTTTTTAAAGAAAAGATTTATTTTCTTTTTATTTATGTGTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTTTTAAAGAAAAGATTTATTTTCTTTTTATTTATGTGTATA  513

seq1  TGTTTGTTGGCATGTATGCCAATGTATGGGTACCTGCAGAGGCCAGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTGGCATGTATGCCAATGTATGGGTACCTGCAGAGGCCAGAAGA  563

seq1  GGGGACCAGATACCATGAACTTGGAGTTAGAGGTAGTTATAAGCCTCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACCAGATACCATGAACTTGGAGTTAGAGGTAGTTATAAGCCTCTGA  613

seq1  ATTTGGGGATTAGGAACTCTGGCCCTCTGGAAGAACAGTTGCCATTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGGATTAGGAACTCTGGCCCTCTGGAAGAACAGTTGCCATTTTGT  663

seq1  GGTATTTCTTCAGTCTCAATAGAAGAAAGTTTTACTCATACAGGAAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTCTTCAGTCTCAATAGAAGAAAGTTTTACTCATACAGGAAAAAA  713

seq1  AACCACGTTCCTGAGGAAAACCAAAAGACCAAAAAATTTCTTTTTGCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACGTTCCTGAGGAAAACCAAAAGACCAAAAAATTTCTTTTTGCTTT  763

seq1  CATTTTATTAGAAGATTCAAAATGTTGATCATGAGGACATGGTCTCCAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTATTAGAAGATTCAAAATGTTGATCATGAGGACATGGTCTCCAAC  813

seq1  AGAAAGTATGCAATAATTTATTTTCTCTTCAAGTGATGTCTATTTATGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTATGCAATAATTTATTTTCTCTTCAAGTGATGTCTATTTATGCA  863

seq1  TTTTATATATAAGCTCAGGAGAAATAATTTAATAGAGAATATTTTAAAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATATAAGCTCAGGAGAAATAATTTAATAGAGAATATTTTAAAGA  913

seq1  TAGAAAAAAAAACATTCAGGTTTTCCAAATACCTATAGATAAACACCCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAAAAAACATTCAGGTTTTCCAAATACCTATAGATAAACACCCTT  963

seq1  GACTAGGAAGTGGGTGGGCACTAGAGTAACAAACTATTAAAGTAACCTGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGGAAGTGGGTGGGCACTAGAGTAACAAACTATTAAAGTAACCTGA  1013

seq1  AATATTGTCATATTGAGTTCCTGTTCAGTCCATGGCAGTTTGGGGTTGAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGTCATATTGAGTTCCTGTTCAGTCCATGGCAGTTTGGGGTTGAA  1063

seq1  TGGCATGAAAACATCAGCATTTTATTTTGATAAAGATTATTTCAATGGAG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGAAAACATCAGCATTTTATTTTGATAAAGATTATTTCAATGGAG  1113

seq1  CTGCAAATTTTGTTTTACCATATTGGCATTTTGGATGGCTGGGGTATGCT  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAATTTTGTTTTACCATATTGGCATTTTGGATGGCTGGGGTATGCT  1163

seq1  ACTTTATCTTTGAATTC  1217
      |||||||||||||||||
seq2  ACTTTATCTTTGAATTC  1180

seq1: chr13_9896177_9897342
seq2: B6Ng01-071G23.g_68_1224

seq1  GAATTCAGTTCTCTGCAGATTTATGGAGCATCCCCTTTACCTTTGGCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCTCTGCAGATTTATGGAGCATCCCCTTTACCTTTGGCATC  50

seq1  AGGTGCCGTGCATGGCATGTTTTCTCTCATATGCAGAATCCAGACTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCCGTGCATGGCATGTTTTCTCTCATATGCAGAATCCAGACTTTTG  100

seq1  AAAAAAAAAAAAAAGAAGCACACAAAGAAATATGTCCATGACACATGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAGAAGCACACAAAGAAATATGTCCATGACACATGAGT  150

seq1  GTGGAAAAGTCAGAGTGAAACCCATTATTTCAAACAATGAATAAACTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAAGTCAGAGTGAAACCCATTATTTCAAACAATGAATAAACTGAT  200

seq1  AAATGAGCTTAAAAATCTTGTGTGTTTTTGATCTGTGGTTGGTTGACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGCTTAAAAATCTTGTGTGTTTTTGATCTGTGGTTGGTTGACTCT  250

seq1  GGGAAGGCTGAGCCCAGGGATACAGGGGACTGACCAGATCAGTGTAATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGCTGAGCCCAGGGATACAGGGGACTGACCAGATCAGTGTAATCA  300

seq1  GGAAATACCCTGTAAGTGTCAAACCATCGATGCCACTACTGGGAATACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATACCCTGTAAGTGTCAAACCATCGATGCCACTACTGGGAATACTC  350

seq1  TTCATTCAAAGCCAGATAAAAATGACTGATATGACAAACAGCAAGGACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCAAAGCCAGATAAAAATGACTGATATGACAAACAGCAAGGACTT  400

seq1  GCAGGCTGGTGCAGCTGCCACTCATTAGCATACAACAGGGCAACTGGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTGGTGCAGCTGCCACTCATTAGCATACAACAGGGCAACTGGTTA  450

seq1  TCTGTCCCTGGGAGGCTGCAGTGTTCTCATGGGTAAAATGAGGACACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCCTGGGAGGCTGCAGTGTTCTCATGGGTAAAATGAGGACACAGA  500

seq1  AGGACATGGGCTCCTCTCCAGCTATAATTCTGCAGAATTATAGCTAGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATGGGCTCCTCTCCAGCTATAATTCTGCAGAATTATAGCTAGGTG  550

seq1  CCTCTGAATCCCCTATCTGCACTGAACTGCCTGTCTTAATTTTCCAGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAATCCCCTATCTGCACTGAACTGCCTGTCTTAATTTTCCAGCTC  600

seq1  CCTGACCACCTGTAGGCATGAGGGCAGTCCTTTTCAGCCTCCTATTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCACCTGTAGGCATGAGGGCAGTCCTTTTCAGCCTCCTATTTCTG  650

seq1  CAGGTCTAGAACATTAGAAATGGCCTAGTTCTTCTTAGCCCTTCTAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTAGAACATTAGAAATGGCCTAGTTCTTCTTAGCCCTTCTAGGAA  700

seq1  AAGCAATGTATGGGGACCGAGAGATAGCTAAGAAGGTAAATGTGATTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATGTATGGGGACCGAGAGATAGCTAAGAAGGTAAATGTGATTGAA  750

seq1  ACACAGACCTGACGTCTAAGGAACGTACAAAGG-AAGGGCAGAACTGACT  799
      ||||||||||||||||| ||||||||||||||| ||||||||||||||||
seq2  ACACAGACCTGACGTCT-AGGAACGTACAAAGGAAAGGGCAGAACTGACT  799

seq1  CCTGAAAACTGCCTTCTGATCCTCATGTGTGCTTTTTGGCATGGGCACAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAACTGCCTTCTGATCCTCATGTGTGCTTTTTGGCATGGGCACAC  849

seq1  CTGAGCACAGACACACACACACACACACACACACACACACTCACTCACTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCACAGACACACACACACACACACACACACACACACTCACTCACTC  899

seq1  ACTCACAACTTGCTAAAGGTTAAAAAACAGAGAAGTGGTTAGAATTCTAG  949
      |||||| ||||||||||||||||||||||||||||||| |||||||||||
seq2  ACTCAC-ACTTGCTAAAGGTTAAAAAACAGAGAAGTGG-TAGAATTCTAG  947

seq1  TGTGAAGCTTGATCTTAAACAGTTCACTTGAAATAGTTACTCAAAGGGCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGCTTGATCTTAAACAGTTCACTTGAAATAGTTACTCAAAGGGCA  997

seq1  AAGGAAGCAGATGGTTGTATGTGAGTTCCAAGCCAGTGGGCTGGGAAGCC  1049
      || ||||||||||| ||||||||||||||||||||||||||| |||||||
seq2  AA-GAAGCAGATGGGTGTATGTGAGTTCCAAGCCAGTGGGCT-GGAAGCC  1045

seq1  TGAGGGACTTAAAGCAAATGCTGGAGTTGGATTCTTATTGGGAAACTGAG  1099
      ||| ||||||||||||| ||||||||||||| |||| |  |||||| |||
seq2  TGA-GGACTTAAAGCAATTGCTGGAGTTGGAATCTT-TATGGAAAC-GAG  1092

seq1  -CAGAGTCTGACTGAGATGTGTGGCCTGAT-GATGAATTACCTGGTGACC  1147
       |||||||||||||| |||||||||||||| |||||| ||||||| ||||
seq2  ACAGAGTCTGACTGA-ATGTGTGGCCTGATAGATGAAATACCTGG-GACC  1140

seq1  TGGTGACCTGGTGATCCTC  1166
      |||||| |||| |||||||
seq2  TGGTGA-CTGG-GATCCTC  1157