BAC Information

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BAC

Clone NameB6Ng01-071J16
Chromosome13 (Build37)1 (Build37)
Map Location 29,585,101 - 29,585,287165,600,377 - 165,600,602
singlet/doubletsingletsinglet
Overlap geneCdkal1
Upstream genePpia-ps13_297.1, LOC626683, 2610307P16Rik, Sox4, LOC100041135
Downstream geneE2f3, Mboat1, Agtr1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071J16.bB6Ng01-071J16.g
ACCDH889256DH889257
length988226
definitionDH889256|Mus musculus domesticus DNA, BAC clone: B6Ng01-071J16, 5' end.DH889257|Mus musculus domesticus DNA, BAC clone: B6Ng01-071J16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(29,585,101 - 29,585,287)(165,600,377 - 165,600,602)
sequence
gaattctaccagacttttaaagaagagctaaaaccaatacccctcaaact
attccacaaaatagaaagagaaggaacaatgccaaactcattcaatgaag
tcatagtcaccttgaaacctaaaccacacagactcaaccaagaaagagaa
ttttagaccaatttcccttatgaacactgataaaataatactcaagatat
tcgcaaaccaaatccaggaacacatcaaagacatcatccatcaagatcaa
gtaggcttcatcccagggatgcagggatggttcaatatattaaaatccat
caatgtaatccatcatataaacaaactgaaagaaaaaaacccacatgatt
ctctcattagagctgaaaaagcctttgacaaaatctaacatcacttcatg
ttaaaagtcttggagagatcaggaatacaaggcacgtacataaacataat
aaaagaaatttacagcaagccaatagctaatataatagagagagcttaaa
gtaattctactaaaatcaggaatagtacaaagctttccactgtctccata
tctacttaatatagtacttaaagttctagcctgaggaataagacaactag
aggagatcacagcaatacaaattggaatggaagaagtcaaagtatcacca
ttttcagatgatatgttagtatacataaacgacccccaaaatactaccag
agaacttctacagctgataactacctccagcaaagtggctaaatataaaa
ttaactaaaaaaataaatcagcagctctcctttatacacatgataaatgg
gtagagaaagaaattaggacctgggcggtggtagcacacgcctttaatcc
cagcacttgggaggcagaggcaggcggatttctgagttcaaggccagcct
ggtctacagagtgagttccaggacagccaggctacacagagaaaccctgt
ctcagaaagaaagagagggaagaagaagatagagagag
ccctcaaataaatctgttttcctctctagggaccaatctaaaggtattac
cactaggcaaacatttatagagcacctactgggtgtaaggcacagatgga
tgtaggggcaaaaggaaactcaccggggggcacagcaattcaagaggaat
ctgctgaggaagctcctttgtttcctggtaaccagttgtgtgtgtgtgag
tgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_29585101_29585287
seq2: B6Ng01-071J16.b_847_1032 (reverse)

seq1  CTCTCTCTCTCTCTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGT  50
        |||||||| |||| || ||   | | |||    |||  ||||||||||
seq2  --CTCTCTCTATCTTCTTCTTCCCTCTCTTT---CTTTCTGAGACAGGGT  45

seq1  TTCTCTGTATAGCCCTGGCTATCCTGGAACTCACTCTGTAGACCAGGCTG  100
      |||||||| ||| ||||||| |||||||||||||||||||||||||||||
seq2  TTCTCTGTGTAG-CCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTG  94

seq1  GCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTTCCAAGTGCTGGGATTA  150
      ||||  ||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTA  144

seq1  AAGGCGTGCACCACCACCGCCCAACGG-------GTCTTTCTCT  187
      ||||||||  | |||||||||||  ||        |||||||||
seq2  AAGGCGTGTGCTACCACCGCCCA--GGTCCTAATTTCTTTCTCT  186

seq1: chr1_165600377_165600602
seq2: B6Ng01-071J16.g_73_298

seq1  CCCTCAAATAAATCTGTTTTCCTCTCTAGGGACCAATCTAAAGGTATTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAAATAAATCTGTTTTCCTCTCTAGGGACCAATCTAAAGGTATTAC  50

seq1  CACTAGGCAAACATTTATAGAGCACCTACTGGGTGTAAGGCACAGATGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGGCAAACATTTATAGAGCACCTACTGGGTGTAAGGCACAGATGGA  100

seq1  TGTAGGGGCAAAAGGAAACTCACCGGGGGGCACAGCAATTCAAGAGGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGGCAAAAGGAAACTCACCGGGGGGCACAGCAATTCAAGAGGAAT  150

seq1  CTGCTGAGGAAGCTCCTTTGTTTCCTGGTAACCAGTTGTGTGTGTGTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAGGAAGCTCCTTTGTTTCCTGGTAACCAGTTGTGTGTGTGTGAG  200

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTG  226
      ||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTG  226