BAC Information

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BAC

Clone NameB6Ng01-071L08
Chromosome13 (Build37)
Map Location 19,064,570 - 19,065,660
singlet/doubletsinglet
Overlap geneAmph
Upstream gene1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2, Vps41
Downstream geneLOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071L08.bB6Ng01-071L08.g
ACCDH889332DH889333
length1,2531,082
definitionDH889332|Mus musculus domesticus DNA, BAC clone: B6Ng01-071L08, 5' end.DH889333|Mus musculus domesticus DNA, BAC clone: B6Ng01-071L08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtttagctctgtaccccatttttaatagggttatctggatctc
tggagtctacctccttaagttctttgtatattttgaactctagcccttta
tccaatgtagggttcataaagatctttcccaatctgtgggttactgtttt
ttcctattgacagtgttttttgccttacagaagcttttaaattttatgag
gtcctatttgtcgactggttttttatgctattttttatttttattaatca
ttccattcatttacatttcaaatgatatcctacttcccagttaccccctc
cacccgtgccccatcacacactccttagttggtggtctagactttgggag
aactgggtattcaggacagcctatgttgttcttccaatggggttgcaatc
tccctcccctttgcctgggtggagtgctcccccacccacccacactcatc
ctcccactgctccagcatccctatattctaaggcatcaaaccttcatgtg
accaggggcctcccctcccattgctgtcagacagggctacatatgtatct
ggagccatgggtctctccaggtacactctttggttggtggtctagacctt
gggagaactgggtagtcaggccagcctgtgttgttcttccaatggggctg
cgatccccctctgctcctccaatccttctcccagctccccaccaggttcc
ctgggttcagtatgatggtcagctccaaacatcctcatctccattggtca
gttgctggctggaccaaggaactgccacactaggttcctgtcagcaagtg
cctcttgaccacggcattgggtttggtgtctgcagatatgatatcctcag
atatcctcaggtgagggtgtccccagttggcccttcttcagtctctgttc
cactttttgtccctgttctcccttcagacagaaatatttctgggttaaaa
actttgaaatgggtgagtggccccatccctcaaccagggaccatgcctat
ctactggagatcgtctcacaaattctatcttctcctctctgtgcattaca
gctaaagtcagtccaatgggatcaaggagcctcacgttcttttagtgtct
ggaatactccagtggctttcccagttctcaatccccctgctacctatttt
ttatcgaatctgactttgtctctggaatctgcactttattcttcgtccta
acctcatgttatcgtccattccctccaaatggttctgtgttcccccaatc
gac
gaattcaaagcacttgtatcgttgccaatgtgctctgtgctccctgctga
tgaatcaaaatgtaatgtttcagctcccgctccagttgcctgctggcatg
tcctcactctgccatcaaaatgctaacctaagccccaaaccataagccca
gttaaattcttccttttataagttaccctggttatggcttctaatcatat
caatagaacactaatacacatggacatgcaaagttattctcctttcaagt
ttgggagatttggtagggagatggtcaggataatgagtgtgctactaagt
tatatattggaaacacaaggagctgctcagtggacacagctgaagaaggc
aagagcctttgccaggcagttactttgtctaaacaacagacaggtggcat
ttttcttacagcttcttcagaaagcaccaggcacaggcaaatagaatggt
gggcagtcagcacaccaaggagtgatggtgaggcagtccttggagaactg
tccatggaacagaactcctaggctccctcagcagctctcacaaaggactt
aggaaagctgtagaaacagtcatttacaattttttttttgtcacttagga
gatctcttatgtacaccaagggaggaagaaagaaagagaaaaatagctct
attttataatttctttgtggaaatttgatatatggactttgcaatgagtt
tagtgtttatgacaccaaaattcatctgacaaagtctgtgtgttagaaat
cttagattcttaataggacaaaatgacaacccacagattgagaaaaacct
ttaccaatcctacatccaatagaggcctaatatccaatatatacaaagaa
ctcaagaaattacactctagagaaccaaaaaaccctattaaaaatgggga
acagaggtaaacagagaattctcaactgaggaaactcgaatggccagaag
cacctaaataaatgtccacatccttagtcttagggaatgcaaatcaaaac
accctgagattcacatcacaccaatcagactggttaagataaaaactcag
tcacagcagagatgcttcgaggatgtggagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_19064570_19065660
seq2: B6Ng01-071L08.g_64_1145

seq1  GAATTCAAAGCACTTGTATCGTTGCCAATGTGCTCTGTGCTCCCTGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCACTTGTATCGTTGCCAATGTGCTCTGTGCTCCCTGCTGA  50

seq1  TGAATCAAAATGTAATGTTTCAGCTCCCGCTCCAGTTGCCTGCTGGCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCAAAATGTAATGTTTCAGCTCCCGCTCCAGTTGCCTGCTGGCATG  100

seq1  TCCTCACTCTGCCATCAAAATGCTAACCTAAGCCCCAAACCATAAGCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACTCTGCCATCAAAATGCTAACCTAAGCCCCAAACCATAAGCCCA  150

seq1  GTTAAATTCTTCCTTTTATAAGTTACCCTGGTTATGGCTTCTAATCATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATTCTTCCTTTTATAAGTTACCCTGGTTATGGCTTCTAATCATAT  200

seq1  CAATAGAACACTAATACACATGGACATGCAAAGTTATTCTCCTTTCAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGAACACTAATACACATGGACATGCAAAGTTATTCTCCTTTCAAGT  250

seq1  TTGGGAGATTTGGTAGGGAGATGGTCAGGATAATGAGTGTGCTACTAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGATTTGGTAGGGAGATGGTCAGGATAATGAGTGTGCTACTAAGT  300

seq1  TATATATTGGAAACACAAGGAGCTGCTCAGTGGACACAGCTGAAGAAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTGGAAACACAAGGAGCTGCTCAGTGGACACAGCTGAAGAAGGC  350

seq1  AAGAGCCTTTGCCAGGCAGTTACTTTGTCTAAACAACAGACAGGTGGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCTTTGCCAGGCAGTTACTTTGTCTAAACAACAGACAGGTGGCAT  400

seq1  TTTTCTTACAGCTTCTTCAGAAAGCACCAGGCACAGGCAAATAGAATGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTACAGCTTCTTCAGAAAGCACCAGGCACAGGCAAATAGAATGGT  450

seq1  GGGCAGTCAGCACACCAAGGAGTGATGGTGAGGCAGTCCTTGGAGAACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTCAGCACACCAAGGAGTGATGGTGAGGCAGTCCTTGGAGAACTG  500

seq1  TCCATGGAACAGAACTCCTAGGCTCCCTCAGCAGCTCTCACAAAGGACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGAACAGAACTCCTAGGCTCCCTCAGCAGCTCTCACAAAGGACTT  550

seq1  AGGAAAGCTGTAGAAACAGTCATTTACAATTTTTTTTTTGTCACTTAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGCTGTAGAAACAGTCATTTACAATTTTTTTTTTGTCACTTAGGA  600

seq1  GATCTCTTATGTACACCAAGGGAGGAAGAAAGAAAGAGAAAAATAGCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTTATGTACACCAAGGGAGGAAGAAAGAAAGAGAAAAATAGCTCT  650

seq1  ATTTTATAATTTCTTTGTGGAAATTTGATATATGGACTTTGCAATGAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATAATTTCTTTGTGGAAATTTGATATATGGACTTTGCAATGAGTT  700

seq1  TAGTGTTTATGACACCAAAATTCATCTGACAAAGTCTGTGTGTTAGAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTTATGACACCAAAATTCATCTGACAAAGTCTGTGTGTTAGAAAT  750

seq1  CTTAGATTCTTAATAGGACAAAATGACAACCCACAGATTGAGAAAAACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATTCTTAATAGGACAAAATGACAACCCACAGATTGAGAAAAACCT  800

seq1  TTACCAATCCTACATCCAATAGAGGCCTAATATCCAATATATACAAAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAATCCTACATCCAATAGAGGCCTAATATCCAATATATACAAAGAA  850

seq1  CTCAAGAAATTACACTCTAGAGAACCAAAAAACCCTATTAAAAATGGGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGAAATTACACTCTAGAGAACCAAAAAACCCTATTAAAAATGGGGA  900

seq1  ACAGAGGTAAACAGAGAATTCTCAACTGAGGAAACTCGAATGGCCAAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACAGAGGTAAACAGAGAATTCTCAACTGAGGAAACTCGAATGGCC-AGAA  949

seq1  GCACCTAAATAAATGTCCAACATCCTTAGTCCTTAGGGAAATGCAAATCA  1000
      |||||||||||||||||| ||||||||||| ||||||| |||||||||||
seq2  GCACCTAAATAAATGTCC-ACATCCTTAGT-CTTAGGG-AATGCAAATCA  996

seq1  AAACAACCCTGAGATTCCACATCACACCAATCAGACTGGTTAAGATAAAA  1050
      |||| ||||||||||| ||||||||||||||||||||||||||||| |||
seq2  AAAC-ACCCTGAGATT-CACATCACACCAATCAGACTGGTTAAGAT-AAA  1043

seq1  AACTCAGGTCACAGCAGAGGATGCTTCGAGGATGTGGAGAA  1091
      |||||| ||||||||||| ||||||||||||||||||||||
seq2  AACTCA-GTCACAGCAGA-GATGCTTCGAGGATGTGGAGAA  1082