BAC Information

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BAC

Clone NameB6Ng01-071O05
Chromosome13 (Build37)
Map Location 93,778,489 - 93,947,187
singlet/doubletdoublet
Overlap geneEG218444, Papd4
Upstream geneRasgrf2, Msh3, Dhfr, 6430502M16Rik, 4930405M20Rik, Zfyve16, LOC100039070, Spz1, Serinc5, Ppia-ps13_1124.1, Thbs4, EG624619
Downstream geneLOC100039163, Homer1, Jmy, EG619883, Bhmt, Bhmt2, Dmgdh, Arsb, Cycs-ps3, Lhfpl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071O05.bB6Ng01-071O05.g
ACCDH889457DH889458
length842989
definitionDH889457|Mus musculus domesticus DNA, BAC clone: B6Ng01-071O05, 5' end.DH889458|Mus musculus domesticus DNA, BAC clone: B6Ng01-071O05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,778,489 - 93,779,330)(93,946,200 - 93,947,187)
sequence
gaattctttggttcttttatcagagagcctccttctagtgcagttgcttg
gctcagaaatcttgcgtaccccttaattttagaaatatttgaacataagc
tggtatagcttgaagaacttatcctattaaatctttggccattttactgg
gaaaatatgaacaatttaaaatccttgaccaacttcccccccaaatattt
gagtctctagataatctgtcctccaccaaagaaccacagctttgagcata
attagcctctgagatcctcctattatcctaggtggagtcaccctgctaag
ccatgtccacaagaccatcattactagggcatgttattcttttggggagc
caagagctgagaacattctctctttccctagtaaatatagtagctttgca
tttgtcagatgcagcctgcatctgcctgtgattctgagaagcatgacatg
aggctccacccagaagtcttcatcctctaatcaaggggccaacagatggg
tgggaaggagatggaatccagggaactgggccataaatatttctcaacag
ccatgaaatttcagttttcctacaacattgaattataataccattcctcc
cataagatgtcccttaaaatgtgctaagtgtcaaaagcctcatgcggctg
agagcacagaggccagtgccctcaatgtccgtgggaggttaatttctcat
gtaagcccagagcttttgaaaggtcaatagtctatattaaaaatcagctt
tattttatttttaatcttaaaaatcattcctcctcctcctcctccttctc
tctctctctccctccctccctctctctctctctctctctctc
gaattccctatgaagcaaaggatggccttgaactccttgatcctcctacc
ttcatctgagtgctgggatttgcagatgtgcacaactacgcttggctttt
cttagaaaattttaatgtgagcttatctgcaagagaaagtaagtttaggg
gccttgaagaaggcagtaaacattttggaatggagtagtgaaaagtggga
acagtattaaccagagacatcagaataaaggctaaggatacaaagctagg
ccaacccttacaccatacatttgaaagactctactttctaaaaagcttag
ctttgtctttctgtatatgttaggtttaaattttaaagagaaggcagtgt
tgtactgccttcaggtagacatcttgcagcacaggaattagagcatgagg
ggtaactttgctactccatgatataacggaggagttcagagatgcattct
gggatagtggttgtatagggaaggacatcaggatcacttaggtgctgatg
ggttggaagaaaaaggaggtctcaaggaattcctgactaggtctagagaa
gatattttagaggtgggggtgataagaaaatgagttgaatgggaaattaa
agcggaagcagtatattagaatttaaaataccaggactagaatacatagc
tatgagagtataccagtggaaaatattatattaaaaaaaattcagaagaa
tatgttgtgatacatgtagctcagtacatataagggtattgcttaccatc
ctatcatcctatgtgacagtgagagttggtgtgaagcgataatgttaact
acgtaggtgcctaaacaaaggaagatcagcagaggccaactctcatctca
agacaatcaagggttccaagaagctatgaaaggtagagggtagtttgtgt
gaatataaaagacttctaaaatctgttctatgcagtattatttattcaca
gttgtgactgttagaggttgagctaacttctccaaaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_93778489_93779330
seq2: B6Ng01-071O05.b_49_890

seq1  GAATTCTTTGGTTCTTTTATCAGAGAGCCTCCTTCTAGTGCAGTTGCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGTTCTTTTATCAGAGAGCCTCCTTCTAGTGCAGTTGCTTG  50

seq1  GCTCAGAAATCTTGCGTACCCCTTAATTTTAGAAATATTTGAACATAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAAATCTTGCGTACCCCTTAATTTTAGAAATATTTGAACATAAGC  100

seq1  TGGTATAGCTTGAAGAACTTATCCTATTAAATCTTTGGCCATTTTACTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATAGCTTGAAGAACTTATCCTATTAAATCTTTGGCCATTTTACTGG  150

seq1  GAAAATATGAACAATTTAAAATCCTTGACCAACTTCCCCCCCAAATATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATGAACAATTTAAAATCCTTGACCAACTTCCCCCCCAAATATTT  200

seq1  GAGTCTCTAGATAATCTGTCCTCCACCAAAGAACCACAGCTTTGAGCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTCTAGATAATCTGTCCTCCACCAAAGAACCACAGCTTTGAGCATA  250

seq1  ATTAGCCTCTGAGATCCTCCTATTATCCTAGGTGGAGTCACCCTGCTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCCTCTGAGATCCTCCTATTATCCTAGGTGGAGTCACCCTGCTAAG  300

seq1  CCATGTCCACAAGACCATCATTACTAGGGCATGTTATTCTTTTGGGGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCCACAAGACCATCATTACTAGGGCATGTTATTCTTTTGGGGAGC  350

seq1  CAAGAGCTGAGAACATTCTCTCTTTCCCTAGTAAATATAGTAGCTTTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCTGAGAACATTCTCTCTTTCCCTAGTAAATATAGTAGCTTTGCA  400

seq1  TTTGTCAGATGCAGCCTGCATCTGCCTGTGATTCTGAGAAGCATGACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCAGATGCAGCCTGCATCTGCCTGTGATTCTGAGAAGCATGACATG  450

seq1  AGGCTCCACCCAGAAGTCTTCATCCTCTAATCAAGGGGCCAACAGATGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCACCCAGAAGTCTTCATCCTCTAATCAAGGGGCCAACAGATGGG  500

seq1  TGGGAAGGAGATGGAATCCAGGGAACTGGGCCATAAATATTTCTCAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGGAGATGGAATCCAGGGAACTGGGCCATAAATATTTCTCAACAG  550

seq1  CCATGAAATTTCAGTTTTCCTACAACATTGAATTATAATACCATTCCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAATTTCAGTTTTCCTACAACATTGAATTATAATACCATTCCTCC  600

seq1  CATAAGATGTCCCTTAAAATGTGCTAAGTGTCAAAAGCCTCATGCGGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGATGTCCCTTAAAATGTGCTAAGTGTCAAAAGCCTCATGCGGCTG  650

seq1  AGAGCACAGAGGCCAGTGCCCTCAATGTCCGTGGGAGGTTAATTTCTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACAGAGGCCAGTGCCCTCAATGTCCGTGGGAGGTTAATTTCTCAT  700

seq1  GTAAGCCCAGAGCTTTTGAAAGGTCAATAGTCTATATTAAAAATCAGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCCCAGAGCTTTTGAAAGGTCAATAGTCTATATTAAAAATCAGCTT  750

seq1  TATTTTATTTTTAATCTTAAAAATCATTCCTCCTCCTCCTCCTCCTTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATTTTTAATCTTAAAAATCATTCCTCCTCCTCCTCCTCCTTCTC  800

seq1  TCTCTCTCTCCCTCCCTCCCTCTCTCTCTCTCTCTCTCTCTC  842
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCCCTCCCTCCCTCTCTCTCTCTCTCTCTCTCTC  842

seq1: chr13_93946200_93947187
seq2: B6Ng01-071O05.g_65_1053 (reverse)

seq1  CCCTTTTGAGAAGTTTGCTCAACCTCTAACAGTCAC-ACTGTGGAATAAA  49
      |||||| |||||||| |||||||||||||||||||| ||||| |||||||
seq2  CCCTTTGGAGAAGTTAGCTCAACCTCTAACAGTCACAACTGT-GAATAAA  49

seq1  TAATACTGCATGGAACAGATTTTAGGAAGTCTTTTATATTCACACAAACT  99
      ||||||||||| |||||||||||| |||||||||||||||||||||||||
seq2  TAATACTGCATAGAACAGATTTTA-GAAGTCTTTTATATTCACACAAACT  98

seq1  ACCCTCTACCTTTCATAGCTTTCTTGGAACCC-TGA-TGTCTTGAGATGA  147
      ||||||||||||||||||| |||||||||||| ||| |||||||||||||
seq2  ACCCTCTACCTTTCATAGC-TTCTTGGAACCCTTGATTGTCTTGAGATGA  147

seq1  G-GTTGGCCTCTGCTGATCTTCCTTTGTTTAGGCACCTACGTAGTTAACA  196
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGCCTCTGCTGATCTTCCTTTGTTTAGGCACCTACGTAGTTAACA  197

seq1  TTATCGCTTCACACCAACTCTCACTGTCACATAGGATGATAGGATGGTAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCGCTTCACACCAACTCTCACTGTCACATAGGATGATAGGATGGTAA  247

seq1  GCAATACCCTTATATGTACTGAGCTACATGTATCACAACATATTCTTCTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATACCCTTATATGTACTGAGCTACATGTATCACAACATATTCTTCTG  297

seq1  AATTTTTTTTAATATAATATTTTCCACTGGTATACTCTCATAGCTATGTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTTTAATATAATATTTTCCACTGGTATACTCTCATAGCTATGTA  347

seq1  TTCTAGTCCTGGTATTTTAAATTCTAATATACTGCTTCCGCTTTAATTTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTCCTGGTATTTTAAATTCTAATATACTGCTTCCGCTTTAATTTC  397

seq1  CCATTCAACTCATTTTCTTATCACCCCCACCTCTAAAATATCTTCTCTAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCAACTCATTTTCTTATCACCCCCACCTCTAAAATATCTTCTCTAG  447

seq1  ACCTAGTCAGGAATTCCTTGAGACCTCCTTTTTCTTCCAACCCATCAGCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGTCAGGAATTCCTTGAGACCTCCTTTTTCTTCCAACCCATCAGCA  497

seq1  CCTAAGTGATCCTGATGTCCTTCCCTATACAACCACTATCCCAGAATGCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGTGATCCTGATGTCCTTCCCTATACAACCACTATCCCAGAATGCA  547

seq1  TCTCTGAACTCCTCCGTTATATCATGGAGTAGCAAAGTTACCCCTCATGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAACTCCTCCGTTATATCATGGAGTAGCAAAGTTACCCCTCATGC  597

seq1  TCTAATTCCTGTGCTGCAAGATGTCTACCTGAAGGCAGTACAACACTGCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTCCTGTGCTGCAAGATGTCTACCTGAAGGCAGTACAACACTGCC  647

seq1  TTCTCTTTAAAATTTAAACCTAACATATACAGAAAGACAAAGCTAAGCTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTAAAATTTAAACCTAACATATACAGAAAGACAAAGCTAAGCTT  697

seq1  TTTAGAAAGTAGAGTCTTTCAAATGTATGGTGTAAGGGTTGGCCTAGCTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAGTAGAGTCTTTCAAATGTATGGTGTAAGGGTTGGCCTAGCTT  747

seq1  TGTATCCTTAGCCTTTATTCTGATGTCTCTGGTTAATACTGTTCCCACTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCTTAGCCTTTATTCTGATGTCTCTGGTTAATACTGTTCCCACTT  797

seq1  TTCACTACTCCATTCCAAAATGTTTACTGCCTTCTTCAAGGCCCCTAAAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTACTCCATTCCAAAATGTTTACTGCCTTCTTCAAGGCCCCTAAAC  847

seq1  TTACTTTCTCTTGCAGATAAGCTCACATTAAAATTTTCTAAGAAAAGCCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTCTCTTGCAGATAAGCTCACATTAAAATTTTCTAAGAAAAGCCA  897

seq1  AGCGTAGTTGTGCACATCTGCAAATCCCAGCACTCAGATGAAGGTAGGAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTAGTTGTGCACATCTGCAAATCCCAGCACTCAGATGAAGGTAGGAG  947

seq1  GATCAAGGAGTTCAAGGCCATCCTTTGCTTCATAGGGAATTC  988
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAGGAGTTCAAGGCCATCCTTTGCTTCATAGGGAATTC  989