BAC Information

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BAC

Clone NameB6Ng01-072A01
Chromosome13 (Build37)
Map Location 114,948,659 - 115,062,058
singlet/doubletdoublet
Overlap genenone
Upstream geneGzmk, Esm1, BC067074, LOC100040888, Snag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15, A430090L17Rik
Downstream geneNdufs4, LOC100040958, Fst, 4930467J12Rik, Mocs2, Itga2, LOC100040975, Itga1, Pelo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072A01.bB6Ng01-072A01.g
ACCDH889544DH889545
length1,150894
definitionDH889544|Mus musculus domesticus DNA, BAC clone: B6Ng01-072A01, 5' end.DH889545|Mus musculus domesticus DNA, BAC clone: B6Ng01-072A01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,060,889 - 115,062,058)(114,948,659 - 114,949,556)
sequence
gaattcagatgaggtatgcagcacaatgcagaaactaggcggggtttatt
acaagatatagtggactgagtgggcgacggccaaaagcagctacgtgttt
aggtaggctttgtttctaaatcttggaacagacattattcctgtgggacg
ttttatgtctaggtgactgacagtcccatgtgggtcgactcttaagggag
aagttatggtatgtaaggcctcctgcctgatagtaaacgttgaccttcca
gccagttcagaaggccgagtctctacccagggctgggttcatggctcaga
tcccattcttttgatgagtaacatgtaacagattagtagattagaaagaa
ttacagcaaaaccccaaaatgaatctaaaaagaaggaaagaaagaaagaa
aagaaaagtctgggaggaagagctgtcccttggctccagcgatgctgtcc
ctcagctccagggacttcctccttctgacttcttgtctcatctatagctg
tgctgtcacgaagggcagctgcaatgcgttcacctctttcacaaggcatt
tgaacctataaggaagagctattgggatggctcccactgcctttacctgc
taccaaattaagagtgttaatgagcaagcgcatagggagtgggcctgagg
tcattttcaagtcaaagacagagcaagcctctagaggtcagatttgaagg
acaatagtgaatctgacatcttccacacatctcccccatgaaaaccttga
gacccttcccttttggaaaacggggaactttgctttgagatggcctttgt
tctgttttcctgatgtaaagctctctcctcatctaattcctgtcttctaa
tttgctttgggagcggtgacaggtaatatagggccaccaagtcctatatt
acaaggaacaagtggaatcctcctgcctctgctcttgtgtctacaagctg
gtgattacaaggagggaatccatcttcactggcttcaaaatctgctggta
tctagatatctagcaaagtaccaaaaatactacagatgcagtatttttaa
cgcactataaaaagtgtaattctgatgtccaacatggctgaatgtgaagt
gatatctattaatgactgttacaagcattaagcccggaaggaatactact

gaattcctgactcccaagagcgcacaacttttggtcagcgttgagtcagt
gtgatgaaatgatttgcatctctggactaaatgtttccaactcagatgcc
tgaagtgacagatgagcccaggttttggcactgccccgtccccaccctcc
cactatcccagaaacatgccaagagtcccagtaggacttagcctcagatg
gcagatgcattttccctcccctttttcttaactctctttgaattagaaac
cttcccttctgtgaaaagctccccctccttgcccccagtgcttcatcaga
cctagggatcctgaacttcccaccctgggaggttctcttcctaatgtgaa
accaaagccgagtttcaaagatcatgaaggaggatctcgccagccaatgc
tgggtcttgcatcatgctttcttccaaagagcgaagaaaagcttacccat
ttttatacactccatctctgttccatgagtgctgaaccctcttcagggaa
ccctagtttcaaaaggccagtgtcctgccttccctcttttccttttttag
gcatttccatgggctactatgaataatcactttacaagacactactgttg
gccctgtggttttcaaagcagatttgcctaccgtatatactttgttaggt
tggtatatatacgtggtgaggtcacagctaactctgaaaaaggaaaggac
ctttttgactgaatgccatcttggtctcacccaggtttataacccagtct
taattctgacctgtcctccatctcctgacgttctaggtcattgtgaccaa
catggatgcagctactgaatggtaccttgggtggaggggggaaatttctg
atgttgacattcaagaaggggaatttcttggtcccttttctaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_115060889_115062058
seq2: B6Ng01-072A01.b_41_1190 (reverse)

seq1  AGTATGTATTCCTCTCCGTGCCTTAAATGCTTGTAACAGTCAATTTTAAT  50
      |||| |||||||| |||| ||  | |||||||||||||||||   |||||
seq2  AGTA-GTATTCCT-TCCGGGC--TTAATGCTTGTAACAGTCA---TTAAT  43

seq1  ATGATATCAACTTCAACATTTCAGCCATGTTTGTGACATCAGAATTTACA  100
      | |||||| ||||| ||| ||||||||||||   |||||||||| |||||
seq2  A-GATATC-ACTTC-ACA-TTCAGCCATGTT--GGACATCAGAA-TTACA  86

seq1  CTTTTTAATAGTGCGTTTAAAATACTGCATCTGTAGTTATTTTTGGTAAC  150
      |||||| |||||||||| |||||||||||||||||| |||||||||||  
seq2  CTTTTT-ATAGTGCGTTAAAAATACTGCATCTGTAG-TATTTTTGGTA--  132

seq1  TTTTGCTAGATATCTAGATACCAGCAGATTTTTGAAGGCCAGTGAAGATG  200
       ||||||||||||||||||||||||||| ||||||| |||||||||||||
seq2  CTTTGCTAGATATCTAGATACCAGCAGA-TTTTGAA-GCCAGTGAAGATG  180

seq1  GATTCCCTCCTTGTAATCACCAGCTTGTAGACACAAGAGCAGAGGCAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCCTCCTTGTAATCACCAGCTTGTAGACACAAGAGCAGAGGCAGGA  230

seq1  GGATTCCACTTGTTCCTTGTAATATAGGACTTGGTGGCCCTATATTACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCCACTTGTTCCTTGTAATATAGGACTTGGTGGCCCTATATTACCT  280

seq1  GTCACCGCTCCCAAAGCAAATTAGAAGACAGGAATTAGATGAGGAGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCGCTCCCAAAGCAAATTAGAAGACAGGAATTAGATGAGGAGAGAG  330

seq1  CTTTACATCAGGAAAACAGAACAAAGGCCATCTCAAAGCAAAGTTCCCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACATCAGGAAAACAGAACAAAGGCCATCTCAAAGCAAAGTTCCCCG  380

seq1  TTTTCCAAAAGGGAAGGGTCTCAAGGTTTTCATGGGGGAGATGTGTGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAAAAGGGAAGGGTCTCAAGGTTTTCATGGGGGAGATGTGTGGAA  430

seq1  GATGTCAGATTCACTATTGTCCTTCAAATCTGACCTCTAGAGGCTTGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCAGATTCACTATTGTCCTTCAAATCTGACCTCTAGAGGCTTGCTC  480

seq1  TGTCTTTGACTTGAAAATGACCTCAGGCCCACTCCCTATGCGCTTGCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTGACTTGAAAATGACCTCAGGCCCACTCCCTATGCGCTTGCTCA  530

seq1  TTAACACTCTTAATTTGGTAGCAGGTAAAGGCAGTGGGAGCCATCCCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACTCTTAATTTGGTAGCAGGTAAAGGCAGTGGGAGCCATCCCAAT  580

seq1  AGCTCTTCCTTATAGGTTCAAATGCCTTGTGAAAGAGGTGAACGCATTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTCCTTATAGGTTCAAATGCCTTGTGAAAGAGGTGAACGCATTGC  630

seq1  AGCTGCCCTTCGTGACAGCACAGCTATAGATGAGACAAGAAGTCAGAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCCTTCGTGACAGCACAGCTATAGATGAGACAAGAAGTCAGAAGG  680

seq1  AGGAAGTCCCTGGAGCTGAGGGACAGCATCGCTGGAGCCAAGGGACAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTCCCTGGAGCTGAGGGACAGCATCGCTGGAGCCAAGGGACAGCT  730

seq1  CTTCCTCCCAGACTTTTCTTTTCTTTCTTTCTTTCCTTCTTTTTAGATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCCAGACTTTTCTTTTCTTTCTTTCTTTCCTTCTTTTTAGATTC  780

seq1  ATTTTGGGGTTTTGCTGTAATTCTTTCTAATCTACTAATCTGTTACATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGGGTTTTGCTGTAATTCTTTCTAATCTACTAATCTGTTACATGT  830

seq1  TACTCATCAAAAGAATGGGATCTGAGCCATGAACCCAGCCCTGGGTAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATCAAAAGAATGGGATCTGAGCCATGAACCCAGCCCTGGGTAGAG  880

seq1  ACTCGGCCTTCTGAACTGGCTGGAAGGTCAACGTTTACTATCAGGCAGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGGCCTTCTGAACTGGCTGGAAGGTCAACGTTTACTATCAGGCAGGA  930

seq1  GGCCTTACATACCATAACTTCTCCCTTAAGAGTCGACCCACATGGGACTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTACATACCATAACTTCTCCCTTAAGAGTCGACCCACATGGGACTG  980

seq1  TCAGTCACCTAGACATAAAACGTCCCACAGGAATAATGTCTGTTCCAAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCACCTAGACATAAAACGTCCCACAGGAATAATGTCTGTTCCAAGA  1030

seq1  TTTAGAAACAAAGCCTACCTAAACACGTAGCTGCTTTTGGCCGTCGCCCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAACAAAGCCTACCTAAACACGTAGCTGCTTTTGGCCGTCGCCCA  1080

seq1  CTCAGTCCACTATATCTTGTAATAAACCCCGCCTAGTTTCTGCATTGTGC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCCACTATATCTTGTAATAAACCCCGCCTAGTTTCTGCATTGTGC  1130

seq1  TGCATACCTCATCTGAATTC  1170
      ||||||||||||||||||||
seq2  TGCATACCTCATCTGAATTC  1150

seq1: chr13_114948659_114949556
seq2: B6Ng01-072A01.g_66_959

seq1  GAATTCCTGACTCCCAAGAGCGCACAACTTTTGGTCAGCGTTGAGTCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGACTCCCAAGAGCGCACAACTTTTGGTCAGCGTTGAGTCAGT  50

seq1  GTGATGAAATGATTTGCATCTCTGGACTAAATGTTTCCAACTCAGATGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAAATGATTTGCATCTCTGGACTAAATGTTTCCAACTCAGATGCC  100

seq1  TGAAGTGACAGATGAGCCCAGGTTTTGGCACTGCCCCGTCCCCACCCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGACAGATGAGCCCAGGTTTTGGCACTGCCCCGTCCCCACCCTCC  150

seq1  CACTATCCCAGAAACATGCCAAGAGTCCCAGTAGGACTTAGCCTCAGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATCCCAGAAACATGCCAAGAGTCCCAGTAGGACTTAGCCTCAGATG  200

seq1  GCAGATGCATTTTCCCTCCCCTTTTTCTTAACTCTCTTTGAATTAGAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGCATTTTCCCTCCCCTTTTTCTTAACTCTCTTTGAATTAGAAAC  250

seq1  CTTCCCTTCTGTGAAAAGCTCCCCCTCCTTGCCCCCAGTGCTTCATCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTTCTGTGAAAAGCTCCCCCTCCTTGCCCCCAGTGCTTCATCAGA  300

seq1  CCTAGGGATCCTGAACTTCCCACCCTGGGAGGTTCTCTTCCTAATGTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGGATCCTGAACTTCCCACCCTGGGAGGTTCTCTTCCTAATGTGAA  350

seq1  ACCAAAGCCGAGTTTCAAAGATCATGAAGGAGGATCTCGCCAGCCAATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGCCGAGTTTCAAAGATCATGAAGGAGGATCTCGCCAGCCAATGC  400

seq1  TGGGTCTTGCATCATGCTTTCTTCCAAAGAGCGAAGAAAAGCTTACCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTTGCATCATGCTTTCTTCCAAAGAGCGAAGAAAAGCTTACCCAT  450

seq1  TTTTATACACTCCATCTCTGTTCCATGAGTGCTGAACCCTCTTCAGGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATACACTCCATCTCTGTTCCATGAGTGCTGAACCCTCTTCAGGGAA  500

seq1  CCCTAGTTTCAAAAGGCCAGTGTCCTGCCTTCCCTCTTTTCCTTTTTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGTTTCAAAAGGCCAGTGTCCTGCCTTCCCTCTTTTCCTTTTTTAG  550

seq1  GCATTTCCATGGGCTACTATGAATAATCACTTTACAAGACACTACTGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCCATGGGCTACTATGAATAATCACTTTACAAGACACTACTGTTG  600

seq1  GCCCTGTGGTTTTCAAAGCAGATTTGCCTACCGTATATACTTTGTTAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGTGGTTTTCAAAGCAGATTTGCCTACCGTATATACTTTGTTAGGT  650

seq1  TGGTATATATACGTGGTGAGGTCACAGCTAACTCTGAAAAAGGAAAGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATATATACGTGGTGAGGTCACAGCTAACTCTGAAAAAGGAAAGGAC  700

seq1  CTTTTTGACTGAATGCCATCTTGGTCTCACCCAGGTTTATAACCCAGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGACTGAATGCCATCTTGGTCTCACCCAGGTTTATAACCCAGTCT  750

seq1  TAATTCTGACCTGTCCTCCATCTCCTGACGTTCTAGGTCATTGTGACCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTGACCTGTCCTCCATCTCCTGACGTTCTAGGTCATTGTGACCAA  800

seq1  CATGGATGCAGCTACTGAATGGTACCTTGGGTGGAGGGGGGAAATTATCT  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CATGGATGCAGCTACTGAATGGTACCTTGGGTGGAGGGGGGAAATT-TCT  849

seq1  GATGTAGACATTCAAAGAATGGAGAATTTCCTTGTTCCCTTTTCTAAA  898
      ||||| ||||||| ||||| || |||||| |||| |||||||||||||
seq2  GATGTTGACATTC-AAGAA-GGGGAATTT-CTTGGTCCCTTTTCTAAA  894