BAC Information

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BAC

Clone NameB6Ng01-072E05
Chromosome13 (Build37)
Map Location 55,842,224 - 55,948,104
singlet/doubletdoublet
Overlap genePcbd2, Catsper3, Pitx1
Upstream geneGprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik
Downstream geneH2afy, BC027057, Neurog1, Cxcl14, LOC100040926, AU042651, Il9, Fbxl21, Lect2, Tgfbi, Smad5, EG627415, Trpc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072E05.bB6Ng01-072E05.g
ACCDH889729DH889730
length8001,031
definitionDH889729|Mus musculus domesticus DNA, BAC clone: B6Ng01-072E05, 5' end.DH889730|Mus musculus domesticus DNA, BAC clone: B6Ng01-072E05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,947,305 - 55,948,104)(55,842,224 - 55,843,253)
sequence
gaattccagttggacctaacactttgtcatcatcacaccttagcgcactg
agattgttatcgtggttaaaagcatggggaaagggtctctcacatcaggc
aatccacgtctcagtttcagaccctccctcttgctgttaaatggtcccta
ccttttggagcaggactgcacaagaaactcagtgaacaggcctggtcttc
atagtggatgattctagaaatcacagttcatcttcccagactggctgtac
cctcaggttttcctatcagcctcacctaaatgatgtttaccctaagccct
gtctttagggcatggcttctagcatgcttcgctgtgctgggagaagggag
tgctttagagttggagaaaggcttagtcccgttccccagaaagcccactc
ttctgccataagcaagcctacaaatacaggctccgctcaggcaaacctgg
caatggactcagggaacaggaaagtggacagccagggtcagggaagggag
gatggagaagggtcctcaactgacagtctgtgctaggcttagaagaagac
agggagctttgccagtggggaggtaagttgttctctgcagtctggtactg
gatccttggtgaacagggggagggagtcagagaaggctggacaaagctgc
agcaggagagaaaggaggaggattagatattagtaagggcctgtgggcag
cccagcctcaaggtagaggccgggaaagaagtggaatgagccggggatgc
tggtttagcttgctttaagggaactaccgttggatgggggggcggggggg

gaattccagtgccttacaactgtgaccggatcgtgggttcatgtgtgtca
gaacatggaggtggggtgctggtgcagcagctgtgcagccagccacatcc
tcgcagcagcaggacagaaccgtgtctgcagtccagtgggttgggtcgtg
gctggccactgacttggttcgctggtgtgggcaggaaggggaggttcttc
ccggctttgaccgtcctgcggtctttaccttttgctatgtcctttcaggt
ttgtttactttaaacaccgcatgtgtgtgagtgttttgcctacacgtatg
tatgtatgttcacactgtgcactcctggtgcctgcagacctcctaagagg
gcctcagatcttctgggactacagttacagatgactgtgagccaccgtgt
gagtgttgggggactgaacctgactcctcttgcaggagtagccaatgctc
ttatccactgagcgcctcttcagccctcgctgtgaacacgctagcatccc
ctccttgcctcgtattgcctgtctgagggagggtagtataggactggctg
gctcattcatggaatccagccaaactgaggttatgggatggcttgtcaca
ctaggtgccagacctacatctccagctccagtatcaatgtcttcagaccc
tcctttttccatcactgtggtcattttctagcagggatcttgttttccaa
ggacaacctgttggatgactttccttaagctggttgcaccataccttcct
gagaaagggatccttaccaggtgacataaacaaagccacactcatctggg
agtagcctgcgtatcaccaactgaacaataaaaggtcattcagttgtact
gttacaatttagtcctatcagacaaacaaaccacgatgattgagtctgtt
tgcttctgtgccagaatggcagggctgtgtcttctccaagctggtcatca
aactgtctcgaatgtaccacctttccccatcacagccctgtgtgtgggga
gtgtccaggtgctggaaccgcacccagttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_55947305_55948104
seq2: B6Ng01-072E05.b_45_844 (reverse)

seq1  CCCCCCCGCCCCCCCATCCAACGGTAGTTCCCTTAAAGCAAGCTAAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCGCCCCCCCATCCAACGGTAGTTCCCTTAAAGCAAGCTAAACCA  50

seq1  GCATCCCCGGCTCATTCCACTTCTTTCCCGGCCTCTACCTTGAGGCTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCCCGGCTCATTCCACTTCTTTCCCGGCCTCTACCTTGAGGCTGGG  100

seq1  CTGCCCACAGGCCCTTACTAATATCTAATCCTCCTCCTTTCTCTCCTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCACAGGCCCTTACTAATATCTAATCCTCCTCCTTTCTCTCCTGCT  150

seq1  GCAGCTTTGTCCAGCCTTCTCTGACTCCCTCCCCCTGTTCACCAAGGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTTTGTCCAGCCTTCTCTGACTCCCTCCCCCTGTTCACCAAGGATC  200

seq1  CAGTACCAGACTGCAGAGAACAACTTACCTCCCCACTGGCAAAGCTCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACCAGACTGCAGAGAACAACTTACCTCCCCACTGGCAAAGCTCCCT  250

seq1  GTCTTCTTCTAAGCCTAGCACAGACTGTCAGTTGAGGACCCTTCTCCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTTCTAAGCCTAGCACAGACTGTCAGTTGAGGACCCTTCTCCATC  300

seq1  CTCCCTTCCCTGACCCTGGCTGTCCACTTTCCTGTTCCCTGAGTCCATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTCCCTGACCCTGGCTGTCCACTTTCCTGTTCCCTGAGTCCATTG  350

seq1  CCAGGTTTGCCTGAGCGGAGCCTGTATTTGTAGGCTTGCTTATGGCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTTGCCTGAGCGGAGCCTGTATTTGTAGGCTTGCTTATGGCAGAA  400

seq1  GAGTGGGCTTTCTGGGGAACGGGACTAAGCCTTTCTCCAACTCTAAAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGCTTTCTGGGGAACGGGACTAAGCCTTTCTCCAACTCTAAAGCA  450

seq1  CTCCCTTCTCCCAGCACAGCGAAGCATGCTAGAAGCCATGCCCTAAAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTCTCCCAGCACAGCGAAGCATGCTAGAAGCCATGCCCTAAAGAC  500

seq1  AGGGCTTAGGGTAAACATCATTTAGGTGAGGCTGATAGGAAAACCTGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTAGGGTAAACATCATTTAGGTGAGGCTGATAGGAAAACCTGAGG  550

seq1  GTACAGCCAGTCTGGGAAGATGAACTGTGATTTCTAGAATCATCCACTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGCCAGTCTGGGAAGATGAACTGTGATTTCTAGAATCATCCACTAT  600

seq1  GAAGACCAGGCCTGTTCACTGAGTTTCTTGTGCAGTCCTGCTCCAAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCAGGCCTGTTCACTGAGTTTCTTGTGCAGTCCTGCTCCAAAAGG  650

seq1  TAGGGACCATTTAACAGCAAGAGGGAGGGTCTGAAACTGAGACGTGGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGACCATTTAACAGCAAGAGGGAGGGTCTGAAACTGAGACGTGGATT  700

seq1  GCCTGATGTGAGAGACCCTTTCCCCATGCTTTTAACCACGATAACAATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGATGTGAGAGACCCTTTCCCCATGCTTTTAACCACGATAACAATCT  750

seq1  CAGTGCGCTAAGGTGTGATGATGACAAAGTGTTAGGTCCAACTGGAATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCGCTAAGGTGTGATGATGACAAAGTGTTAGGTCCAACTGGAATTC  800

seq1: chr13_55842224_55843253
seq2: B6Ng01-072E05.g_68_1097

seq1  GAATTCCAGTGCCTTACAACTGTGACCGGATCGTGGGTTCATGTGTGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGCCTTACAACTGTGACCGGATCGTGGGTTCATGTGTGTCA  50

seq1  GAACATGGAGGTGGGGTGCTGGTGCAGCAGCTGTGCAGCCAGCCACATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGGAGGTGGGGTGCTGGTGCAGCAGCTGTGCAGCCAGCCACATCC  100

seq1  TCGCAGCAGCAGGACAGAACCGTGTCTGCAGTCCAGTGGGTTGGGTCGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCAGCAGCAGGACAGAACCGTGTCTGCAGTCCAGTGGGTTGGGTCGTG  150

seq1  GCTGGCCACTGACTTGGTTCGCTGGTGTGGGCAGGAAGGGGAGGTTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCACTGACTTGGTTCGCTGGTGTGGGCAGGAAGGGGAGGTTCTTC  200

seq1  CCGGCTTTGACCGTCCTGCGGTCTTTACCTTTTGCTATGTCCTTTCAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCTTTGACCGTCCTGCGGTCTTTACCTTTTGCTATGTCCTTTCAGGT  250

seq1  TTGTTTACTTTAAACACCGCATGTGTGTGAGTGTTTTGCCTACACGTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTACTTTAAACACCGCATGTGTGTGAGTGTTTTGCCTACACGTATG  300

seq1  TATGTATGTTCACACTGTGCACTCCTGGTGCCTGCAGACCTCCTAAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATGTTCACACTGTGCACTCCTGGTGCCTGCAGACCTCCTAAGAGG  350

seq1  GCCTCAGATCTTCTGGGACTACAGTTACAGATGACTGTGAGCCACCGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGATCTTCTGGGACTACAGTTACAGATGACTGTGAGCCACCGTGT  400

seq1  GAGTGTTGGGGGACTGAACCTGACTCCTCTTGCAGGAGTAGCCAATGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTGGGGGACTGAACCTGACTCCTCTTGCAGGAGTAGCCAATGCTC  450

seq1  TTATCCACTGAGCGCCTCTTCAGCCCTCGCTGTGAACACGCTAGCATCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCACTGAGCGCCTCTTCAGCCCTCGCTGTGAACACGCTAGCATCCC  500

seq1  CTCCTTGCCTCGTATTGCCTGTCTGAGGGAGGGTAGTATAGGACTGGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGCCTCGTATTGCCTGTCTGAGGGAGGGTAGTATAGGACTGGCTG  550

seq1  GCTCATTCATGGAATCCAGCCAAACTGAGGTTATGGGATGGCTTGTCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTCATGGAATCCAGCCAAACTGAGGTTATGGGATGGCTTGTCACA  600

seq1  CTAGGTGCCAGACCTACATCTCCAGCTCCAGTATCAATGTCTTCAGACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTGCCAGACCTACATCTCCAGCTCCAGTATCAATGTCTTCAGACCC  650

seq1  TCCTTTTTCCATCACTGTGGTCATTTTCTAGCAGGGATCTTGTTTTCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTCCATCACTGTGGTCATTTTCTAGCAGGGATCTTGTTTTCCAA  700

seq1  GGACAACCTGTTGGATGACTTTCCTTAAGCTGGTTGCACCATACCTTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAACCTGTTGGATGACTTTCCTTAAGCTGGTTGCACCATACCTTCCT  750

seq1  GAGAAAGGGATCCTTACCAGGTGACATAAACAAAGCCACACTCATCTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGGGATCCTTACCAGGTGACATAAACAAAGCCACACTCATCTGGG  800

seq1  AGTAGCCTGCGTATCACC-ACTGAACAATAAAAGGTCATTCAGTTGTACT  849
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGTAGCCTGCGTATCACCAACTGAACAATAAAAGGTCATTCAGTTGTACT  850

seq1  GTTACAA-TTAGTCCTATCAGACAAACAAACCACGATGATTGAGTCTGTT  898
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAATTTAGTCCTATCAGACAAACAAACCACGATGATTGAGTCTGTT  900

seq1  TGCTTCTGTGCCAGAAGGGCAGGGCTGTGTCTTCTTCCAAGCTGGTCATC  948
      |||||||||||||||| ||||||||||||||||| |||||||||||||||
seq2  TGCTTCTGTGCCAGAATGGCAGGGCTGTGTCTTC-TCCAAGCTGGTCATC  949

seq1  AAACTGTCCTCGAATGTACCACCTTCCACCATCACAGCCCTGTGTGT-GG  997
      ||||||| ||||||||||||||||| | ||||||||||||||||||| ||
seq2  AAACTGT-CTCGAATGTACCACCTTTCCCCATCACAGCCCTGTGTGTGGG  998

seq1  GAGTGCCCAGGTGCCTGGAACGGCACCCAGTTG  1030
      ||||| ||||||| ||||||| |||||||||||
seq2  GAGTGTCCAGGTG-CTGGAACCGCACCCAGTTG  1030