BAC Information

Click to search

BAC

Clone NameB6Ng01-072H24
Chromosome13 (Build37)
Map Location 96,236,607 - 96,409,528
singlet/doubletdoublet
Overlap geneS100z, F2rl1, F2r, Iqgap2
Upstream geneAp3b1, Tbca, Otp, Wdr41, Pde8b, Zbed3, Aggf1, Crhbp
Downstream geneF2rl2, Sv2c, LOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072H24.bB6Ng01-072H24.g
ACCDH889902DH889903
length7731,003
definitionDH889902|Mus musculus domesticus DNA, BAC clone: B6Ng01-072H24, 5' end.DH889903|Mus musculus domesticus DNA, BAC clone: B6Ng01-072H24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,408,755 - 96,409,528)(96,236,607 - 96,237,544)
sequence
gaattccacaggcctgacgtcatctagaattccaagaacaaaaaacaaag
ttatttgtgcaatttgtccttcagcaactcgtgagcaaatagttttcagt
cgcgatggaagctgatataaatgatgtcacgtaattgttaattagcagaa
cgtagctgctagaacgttgtttcaaataagaatcactcagggtcgacagt
tttttaaaatcattcaaaggttttgttttcaactccgtgtttctgcctga
aagccaggcatgggggagcgtgcctgtaatccaaacatttaggatctcaa
atttgaggccagcctgggctagatgctaaatctcggtctaattcattcct
gatgatgattagaggaagctggggtatgtgtgtgggaagggacatgcagc
ttcctgaggcctggccacctcaggaacactgcctgccatctcccacgggg
ctataattagctgtgtacccatgtttgactctctggagtctttagttgtg
cattctcagacagcctgaaaatccctggcaggcaggggtcacggggctag
aggaaatggctctgcagagaccctggagaagggagaagaggaagctgtgt
ctgtcatgcacgctcactctttttgtgaagacctggtataaataggaaat
gggaaaggccccttttgcaaacgggttactggatcttctccatttttaaa
tctcaaatttgggggttaaacctcactgattccggagaaagctccccttg
tggctttgaatctgacttatttc
gaattccagtcctgacttctgtgcagtcgcagacagccccatctggatgt
cagcagagtggtccaactctgaaatgttagtatttttttttaaagcaaat
tattgataaccgattgtggtccttatttcttttgcaattagatcctttta
aaagggactgtactggctgatgaacagcagtgtggaaatgtgagctgaat
aaactctttccttcccaacttgcttcttggtcatgatatttgtgcaggaa
tagaaaccctgactaagacagggacctgggtaaaatattaaggcctggat
gaattattaaggcctaggtaactgttatctagcctgccattataaggaaa
ctttttcatatgtttttgctgttcttaaaaaactttctaatgccaagata
gactacatagtttgtaatgttttgcgtccttagaaaccaatcaccataga
agtctatataattatttgttctgtatagttatccacaataagcttgggcc
agcactaatcacccagcagcacgtcctgcaccggtgtaaaagcgtttatg
gaataagctgcccctaggatggaccccagcataagagagacatgcactaa
cataagaacctatttggaataagatttccatgttgagtaatggtctagta
aagtttatgcttccaagacctccctgggaactgacatccgacttagcaga
aagagacatgtatgtgggtaactgacatcttaatttcccaactagcaagt
taagacatgcatgtcagacaagtcccatcctggtagacaaagtagacata
aatactagacaaggccagtccctgccacagttggatacccaaccaatggg
agcaggaaaggtatacacaaagatatgttcctaaggaatccccctatccc
taaatctgattggtgaaataacttggcacagattatttataggatttggg
cctaaaaatcctgtagaatctttactcaggatcgtggctcagttcccgaa
tct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_96408755_96409528
seq2: B6Ng01-072H24.b_33_804 (reverse)

seq1  AAATAAGTCATATTCCGAAGCCACAAGGGGGGCTTTCTCCTGAATCAGTC  50
      |||||||||| ||| | ||||||||||||| ||||||||| |||||||| 
seq2  AAATAAGTCAGATT-CAAAGCCACAAGGGGAGCTTTCTCCGGAATCAGTG  49

seq1  CTGGTTAA-CCCCAAATGTGAGATTTTAAAAATGGGAGAAGATCCAGTAA  99
        | |||| |||||||| ||||| ||||||||| ||||||||||||||||
seq2  AGGTTTAACCCCCAAATTTGAGA-TTTAAAAAT-GGAGAAGATCCAGTAA  97

seq1  GCCATTTGCAAATGTGGCCTTTCCCATTTCCTATTTATGCCACGTCTTCA  149
       || |||||||| | ||||||||||||||||||||||| ||| |||||||
seq2  CCCGTTTGCAAAAGGGGCCTTTCCCATTTCCTATTTATACCAGGTCTTCA  147

seq1  CAAGAAGAGTGAGCGTGCCTGACAGACACAGCTTCCTCTTCTCCCTTCTC  199
      ||| |||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAAAAAGAGTGAGCGTGCATGACAGACACAGCTTCCTCTTCTCCCTTCTC  197

seq1  CAGGGTCTCTGCAGAGCCATTTCCTCTAGCCCCGTGACCCCTGCCTGCCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCTCTGCAGAGCCATTTCCTCTAGCCCCGTGACCCCTGCCTGCCA  247

seq1  GGGATTTTCAGGCTGTCTGAGAATGCACAACTAAAGACTCCAGAGAGTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTTCAGGCTGTCTGAGAATGCACAACTAAAGACTCCAGAGAGTCA  297

seq1  AACATGGGTACACAGCTAATTATAGCCCCGTGGGAGATGGCAGGCAGTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGGTACACAGCTAATTATAGCCCCGTGGGAGATGGCAGGCAGTGT  347

seq1  TCCTGAGGTGGCCAGGCCTCAGGAAGCTGCATGTCCCTTCCCACACACAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGGTGGCCAGGCCTCAGGAAGCTGCATGTCCCTTCCCACACACAT  397

seq1  ACCCCAGCTTCCTCTAATCATCATCAGGAATGAATTAGACCGAGATTTAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGCTTCCTCTAATCATCATCAGGAATGAATTAGACCGAGATTTAG  447

seq1  CATCTAGCCCAGGCTGGCCTCAAATTTGAGATCCTAAATGTTTGGATTAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAGCCCAGGCTGGCCTCAAATTTGAGATCCTAAATGTTTGGATTAC  497

seq1  AGGCACGCTCCCCCATGCCTGGCTTTCAGGCAGAAACACGGAGTTGAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACGCTCCCCCATGCCTGGCTTTCAGGCAGAAACACGGAGTTGAAAA  547

seq1  CAAAACCTTTGAATGATTTTAAAAAACTGTCGACCCTGAGTGATTCTTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCTTTGAATGATTTTAAAAAACTGTCGACCCTGAGTGATTCTTAT  597

seq1  TTGAAACAACGTTCTAGCAGCTACGTTCTGCTAATTAACAATTACGTGAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACAACGTTCTAGCAGCTACGTTCTGCTAATTAACAATTACGTGAC  647

seq1  ATCATTTATATCAGCTTCCATCGCGACTGAAAACTATTTGCTCACGAGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTATATCAGCTTCCATCGCGACTGAAAACTATTTGCTCACGAGTT  697

seq1  GCTGAAGGACAAATTGCACAAATAACTTTGTTTTTTGTTCTTGGAATTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGGACAAATTGCACAAATAACTTTGTTTTTTGTTCTTGGAATTCT  747

seq1  AGATGACGTCAGGCCTGTGGAATTC  774
      |||||||||||||||||||||||||
seq2  AGATGACGTCAGGCCTGTGGAATTC  772

seq1: chr13_96236607_96237544
seq2: B6Ng01-072H24.g_68_1000

seq1  GAATTCCAGTCCTGACTTCTGTGCAGTCGCAGACAGCCCCATCTGGATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTCCTGACTTCTGTGCAGTCGCAGACAGCCCCATCTGGATGT  50

seq1  CAGCAGAGTGGTCCAACTCTGAAATGTTAGTATTTTTTTTTAAAGCAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAGTGGTCCAACTCTGAAATGTTAGTATTTTTTTTTAAAGCAAAT  100

seq1  TATTGATAACCGATTGTGGTCCTTATTTCTTTTGCAATTAGATCCTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATAACCGATTGTGGTCCTTATTTCTTTTGCAATTAGATCCTTTTA  150

seq1  AAAGGGACTGTACTGGCTGATGAACAGCAGTGTGGAAATGTGAGCTGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGACTGTACTGGCTGATGAACAGCAGTGTGGAAATGTGAGCTGAAT  200

seq1  AAACTCTTTCCTTCCCAACTTGCTTCTTGGTCATGATATTTGTGCAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTTTCCTTCCCAACTTGCTTCTTGGTCATGATATTTGTGCAGGAA  250

seq1  TAGAAACCCTGACTAAGACAGGGACCTGGGTAAAATATTAAGGCCTGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACCCTGACTAAGACAGGGACCTGGGTAAAATATTAAGGCCTGGAT  300

seq1  GAATTATTAAGGCCTAGGTAACTGTTATCTAGCCTGCCATTATAAGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATTAAGGCCTAGGTAACTGTTATCTAGCCTGCCATTATAAGGAAA  350

seq1  CTTTTTCATATGTTTTTGCTGTTCTTAAAAAACTTTCTAATGCCAAGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCATATGTTTTTGCTGTTCTTAAAAAACTTTCTAATGCCAAGATA  400

seq1  GACTACATAGTTTGTAATGTTTTGCGTCCTTAGAAACCAATCACCATAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACATAGTTTGTAATGTTTTGCGTCCTTAGAAACCAATCACCATAGA  450

seq1  AGTCTATATAATTATTTGTTCTGTATAGTTATCCACAATAAGCTTGGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATATAATTATTTGTTCTGTATAGTTATCCACAATAAGCTTGGGCC  500

seq1  AGCACTAATCACCCAGCAGCACGTCCTGCACCGGTGTAAAAGCGTTTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTAATCACCCAGCAGCACGTCCTGCACCGGTGTAAAAGCGTTTATG  550

seq1  GAATAAGCTGCCCCTAGGATGGACCCCAGCATAAGAGAGACATGCACTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGCTGCCCCTAGGATGGACCCCAGCATAAGAGAGACATGCACTAA  600

seq1  CATAAGAACCTATTTGGAATAAGATTTCCATGTTGAGTAATGGTCTAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGAACCTATTTGGAATAAGATTTCCATGTTGAGTAATGGTCTAGTA  650

seq1  AAGTTTATGCTTCCAAGACCTCCCTGGGAACTGACATCCGACTTAGCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTATGCTTCCAAGACCTCCCTGGGAACTGACATCCGACTTAGCAGA  700

seq1  AAGAGACATGTATGTGGGTAACTGACATCTTAATTTCCCAACTAGCAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACATGTATGTGGGTAACTGACATCTTAATTTCCCAACTAGCAAGT  750

seq1  TAAGACATGCATGTCAGACAAGTCCCATCCTGGTAGACAAAGTAGGACAT  800
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAAGACATGCATGTCAGACAAGTCCCATCCTGGTAGACAAAGTA-GACAT  799

seq1  AAATACTAGACAAGGCCAGTCCCCTGCCACAGTTGGATACCCAACCAATG  850
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAATACTAGACAAGGCCAGT-CCCTGCCACAGTTGGATACCCAACCAATG  848

seq1  GGAGCAGGAAAGGTATACAACAAAGATATGTTCCTAAGGAAATCCCCCTA  900
      |||||||||||||||||| |||||||||||||||||||| ||||||||||
seq2  GGAGCAGGAAAGGTATAC-ACAAAGATATGTTCCTAAGG-AATCCCCCTA  896

seq1  TCCCTAAATTCTGATTGGTGAAATAACTTGGCACAGAT  938
      |||||||| |||||||||||||||||||||||||||||
seq2  TCCCTAAA-TCTGATTGGTGAAATAACTTGGCACAGAT  933