BAC Information

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BAC

Clone NameB6Ng01-072K24
Chromosome13 (Build37)
Map Location 54,841,330 - 55,072,719
singlet/doubletdoublet
Overlap geneGprin1, Sncb, Eif4e1b, Tspan17, Unc5a
Upstream geneE130119H09Rik, Drd1a, Sfxn1, Hrh2, LOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758
Downstream geneHk3, Uimc1, LOC622707, Zfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072K24.bB6Ng01-072K24.g
ACCDH890034DH890035
length8821,156
definitionDH890034|Mus musculus domesticus DNA, BAC clone: B6Ng01-072K24, 5' end.DH890035|Mus musculus domesticus DNA, BAC clone: B6Ng01-072K24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,071,839 - 55,072,719)(54,841,330 - 54,842,488)
sequence
gaattctccagagaacttttaggggtggcgacagggaccccctcaagagc
tagcagaggtcttagcaggcagagcactggtctaattaaactggctttaa
gaatgtgaaagggggcgtggtggcgcatgcctttaatcccagcacttggg
aggcagaggcaggcgaatttctgagttcgaggctagcctggtctacagag
tgagtttccaggacagccagggctatacagagaaaccctgtctcaaaaaa
aaaaaagaatgcgaagctgtccaggtgctgaaccgctgtccaggtgctga
accgctgtccaggtgctgaaccactcactgtccattgtactacagcacca
gtcccggcgaacttcacagccaactgactctgtgcttgcttagaaagaac
taaaagcatcttgggaacctgggtggggaagtagactccataacctttct
gtgtctgttcatctcactcccagaagaccttctgcgggagacagataacc
tggcagaaacccaagtagcctgttttcccatcatgactgtgtctccatcc
tggtgcataaagctttccaggattgtaggtccccaaagggctcaaacagc
aacccaatccagaagcctgtactggggactctggagaagcaagccaggca
ataggaaggcagctggagagacaggctgcacgccaatagtagtccctgga
gagcctggcaggtccagtcctcactgtctcatggtgcacagagggagcgg
tggcctctctgtgatgctgagcgggagggagaagtcggcaccattgaaag
tgcaggcaggagtgtttggctggaaaaacccacaggttagagctccgcaa
gggggctagagttggggtggggggtaggggtg
gaattctccgcccctgaagctgtgcagtccactcttcctaccgtcccagg
ctccccctttccatagatcataggctctgcctttcccttcaacatggact
cttcattcctcaaggacccagcctcttcctttcgtgtggaagtggagtct
gcctgcttcagggagttgccatccatcttccccgagaacacaggatttct
gatctctgaggctgtgggagtggcttctgctgaggacatgggctctggct
tcccaaacaaagtcgttccagagttgtctgaggtcaaggctccatgtgcc
ctcggtgtctctgggagagggctgcagttaggagaagggcaggctaagct
cccagcaggcctctcagaacaggaggccccttccgcagccccactggaac
tggtgtgtctggggtccatgcctaaactctggtccagggcgtgccttggg
ggtgcagggatggcctttggagaggagcagcagtccctcatgaccgggcc
tccagtgcccaggctcccatcctgtggggagcagagggatcttagggggc
tggagtccttctgaagcaggtggagccaggctgggtctttagaactgacg
ctctaccctcatcgtcctgtttgagctcaagtcagctatctggtcctgaa
acagagagaacagactcaggcttaggagacactccagggggaacgactca
gtctgtccaggctcctcactggattctcggtccccatctggtccccttgt
caagaaagtctcagctaaaaatacaaagccaatcctatcactgcctgctt
catcacatctcatagccatccaggaagttaacactcccacactttgggat
actgaggcagaggattttctagttgaggccaagctactcagtaagaccaa
ccccaacagagagacagagagacagacagacagagtgaccttcacaatgt
ggctaccaatctgacttttaacttcacctgtcattccctactccatcagc
ctcagcttctggctcccaagaagtgatgtaatttggcttcaagccccagt
ggctgcaaactttttgttttttttaaggatttattattacagtgaggtgc
acctgaacgcctcagacacaccagaaaaaggtgctcagattctttacaga
tggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_55071839_55072719
seq2: B6Ng01-072K24.b_37_918 (reverse)

seq1  CACCCCTA-CCCCCACCCCAACTCTAGCCCCCTTGCGGAGCTCTAACCTG  49
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCTACCCCCCACCCCAACTCTAGCCCCCTTGCGGAGCTCTAACCTG  50

seq1  TGGGTTTTTCCAGCCAAACACTCCTGCCTGCACTTTCAATGGTGCCGACT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTTTCCAGCCAAACACTCCTGCCTGCACTTTCAATGGTGCCGACT  100

seq1  TCTCCCTCCCGCTCAGCATCACAGAGAGGCCACCGCTCCCTCTGTGCACC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTCCCGCTCAGCATCACAGAGAGGCCACCGCTCCCTCTGTGCACC  150

seq1  ATGAGACAGTGAGGACTGGACCTGCCAGGCTCTCCAGGGACTACTATTGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACAGTGAGGACTGGACCTGCCAGGCTCTCCAGGGACTACTATTGG  200

seq1  CGTGCAGCCTGTCTCTCCAGCTGCCTTCCTATTGCCTGGCTTGCTTCTCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCAGCCTGTCTCTCCAGCTGCCTTCCTATTGCCTGGCTTGCTTCTCC  250

seq1  AGAGTCCCCAGTACAGGCTTCTGGATTGGGTTGCTGTTTGAGCCCTTTGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCCCAGTACAGGCTTCTGGATTGGGTTGCTGTTTGAGCCCTTTGG  300

seq1  GGACCTACAATCCTGGAAAGCTTTATGCACCAGGATGGAGACACAGTCAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTACAATCCTGGAAAGCTTTATGCACCAGGATGGAGACACAGTCAT  350

seq1  GATGGGAAAACAGGCTACTTGGGTTTCTGCCAGGTTATCTGTCTCCCGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGAAAACAGGCTACTTGGGTTTCTGCCAGGTTATCTGTCTCCCGCA  400

seq1  GAAGGTCTTCTGGGAGTGAGATGAACAGACACAGAAAGGTTATGGAGTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTCTTCTGGGAGTGAGATGAACAGACACAGAAAGGTTATGGAGTCT  450

seq1  ACTTCCCCACCCAGGTTCCCAAGATGCTTTTAGTTCTTTCTAAGCAAGCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCCACCCAGGTTCCCAAGATGCTTTTAGTTCTTTCTAAGCAAGCA  500

seq1  CAGAGTCAGTTGGCTGTGAAGTTCGCCGGGACTGGTGCTGTAGTACAATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCAGTTGGCTGTGAAGTTCGCCGGGACTGGTGCTGTAGTACAATG  550

seq1  GACAGTGAGTGGTTCAGCACCTGGACAGCGGTTCAGCACCTGGACAGCGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGAGTGGTTCAGCACCTGGACAGCGGTTCAGCACCTGGACAGCGG  600

seq1  TTCAGCACCTGGACAGCTTCGCATTCTTTTTTTTTTTTGAGACAGGGTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCACCTGGACAGCTTCGCATTCTTTTTTTTTTTTGAGACAGGGTTT  650

seq1  CTCTGTATAGCCCTGGCTGTCCTGGAAACTCACTCTGTAGACCAGGCTAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTATAGCCCTGGCTGTCCTGGAAACTCACTCTGTAGACCAGGCTAG  700

seq1  CCTCGAACTCAGAAATTCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGAACTCAGAAATTCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAA  750

seq1  AGGCATGCGCCACCACGCCCCCTTTCACATTCTTAAAGCCAGTTTAATTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGCGCCACCACGCCCCCTTTCACATTCTTAAAGCCAGTTTAATTA  800

seq1  GACCAGTGCTCTGCCTGCTAAGACCTCTGCTAGCTCTTGAGGGGGTCCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGTGCTCTGCCTGCTAAGACCTCTGCTAGCTCTTGAGGGGGTCCCT  850

seq1  GTCGCCACCCCTAAAAGTTCTCTGGAGAATTC  881
      ||||||||||||||||||||||||||||||||
seq2  GTCGCCACCCCTAAAAGTTCTCTGGAGAATTC  882

seq1: chr13_54841330_54842488
seq2: B6Ng01-072K24.g_70_1225

seq1  GAATTCTCCGCCCCTGAAGCTGTGCAGTCCACTCTTCCTACCGTCCCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCGCCCCTGAAGCTGTGCAGTCCACTCTTCCTACCGTCCCAGG  50

seq1  CTCCCCCTTTCCATAGATCATAGGCTCTGCCTTTCCCTTCAACATGGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCTTTCCATAGATCATAGGCTCTGCCTTTCCCTTCAACATGGACT  100

seq1  CTTCATTCCTCAAGGACCCAGCCTCTTCCTTTCGTGTGGAAGTGGAGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTCCTCAAGGACCCAGCCTCTTCCTTTCGTGTGGAAGTGGAGTCT  150

seq1  GCCTGCTTCAGGGAGTTGCCATCCATCTTCCCCGAGAACACAGGATTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTTCAGGGAGTTGCCATCCATCTTCCCCGAGAACACAGGATTTCT  200

seq1  GATCTCTGAGGCTGTGGGAGTGGCTTCTGCTGAGGACATGGGCTCTGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTGAGGCTGTGGGAGTGGCTTCTGCTGAGGACATGGGCTCTGGCT  250

seq1  TCCCAAACAAAGTCGTTCCAGAGTTGTCTGAGGTCAAGGCTCCATGTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAACAAAGTCGTTCCAGAGTTGTCTGAGGTCAAGGCTCCATGTGCC  300

seq1  CTCGGTGTCTCTGGGAGAGGGCTGCAGTTAGGAGAAGGGCAGGCTAAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGTGTCTCTGGGAGAGGGCTGCAGTTAGGAGAAGGGCAGGCTAAGCT  350

seq1  CCCAGCAGGCCTCTCAGAACAGGAGGCCCCTTCCGCAGCCCCACTGGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAGGCCTCTCAGAACAGGAGGCCCCTTCCGCAGCCCCACTGGAAC  400

seq1  TGGTGTGTCTGGGGTCCATGCCTAAACTCTGGTCCAGGGCGTGCCTTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGTCTGGGGTCCATGCCTAAACTCTGGTCCAGGGCGTGCCTTGGG  450

seq1  GGTGCAGGGATGGCCTTTGGAGAGGAGCAGCAGTCCCTCATGACCGGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAGGGATGGCCTTTGGAGAGGAGCAGCAGTCCCTCATGACCGGGCC  500

seq1  TCCAGTGCCCAGGCTCCCATCCTGTGGGGAGCAGAGGGATCTTAGGGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGCCCAGGCTCCCATCCTGTGGGGAGCAGAGGGATCTTAGGGGGC  550

seq1  TGGAGTCCTTCTGAAGCAGGTGGAGCCAGGCTGGGTCTTTAGAACTGACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCCTTCTGAAGCAGGTGGAGCCAGGCTGGGTCTTTAGAACTGACG  600

seq1  CTCTACCCTCATCGTCCTGTTTGAGCTCAAGTCAGCTATCTGGTCCTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCCTCATCGTCCTGTTTGAGCTCAAGTCAGCTATCTGGTCCTGAA  650

seq1  ACAGAGAGAACAGACTCAGGCTTAGGAGACACTCCAGGGGGAACGACTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGAACAGACTCAGGCTTAGGAGACACTCCAGGGGGAACGACTCA  700

seq1  GTCTGTCCAGGCTCCTCACTGGATTCTCGGTCCCCATCTGGTCCCCTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCCAGGCTCCTCACTGGATTCTCGGTCCCCATCTGGTCCCCTTGT  750

seq1  CAAGAAGGTCTCAGCTAAAAATACAAAGCCAATCCTATCACTGCCTGCTT  800
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAGTCTCAGCTAAAAATACAAAGCCAATCCTATCACTGCCTGCTT  800

seq1  CATCACATCTCATAGCCATCCAGGAAGTTAACACTCCCACAC-TTGGGAT  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CATCACATCTCATAGCCATCCAGGAAGTTAACACTCCCACACTTTGGGAT  850

seq1  ACTGAGGCAGAGGATTTTCTAGTTTGAGGCCAAGCTACTCAGTAAGACCA  899
      |||||||||||||||||||||| |||||||||||||||||||||||||| 
seq2  ACTGAGGCAGAGGATTTTCTAG-TTGAGGCCAAGCTACTCAGTAAGACC-  898

seq1  AACCCCAACAGAGAGACAGAGAGACAGACAGACAGAGTGACCTTTCACAA  949
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AACCCCAACAGAGAGACAGAGAGACAGACAGACAGAGTGACC-TTCACAA  947

seq1  TGTGGCTA-CAATCTGACTTTTTAACTTCA-CTGTCATTTCCCTACTCCA  997
      |||||||| ||||||||| ||||||||||| |||||| ||||||||||||
seq2  TGTGGCTACCAATCTGAC-TTTTAACTTCACCTGTCA-TTCCCTACTCCA  995

seq1  TCAGCCTCAGC-TCATGCTCCCAAG-AGTGATGT-ATTTGTCTTCAAG-C  1043
      ||||||||||| ||  ||||||||| |||||||| ||||| ||||||| |
seq2  TCAGCCTCAGCTTCTGGCTCCCAAGAAGTGATGTAATTTGGCTTCAAGCC  1045

seq1  CCAGTGGCTGCAAACTTTTTTTTTTTTTTTTAAAGATTTATTTATTACAT  1093
      |||||||||||||||  ||||| |||||||||| |||||| |||||||| 
seq2  CCAGTGGCTGCAAAC--TTTTTGTTTTTTTTAAGGATTTA-TTATTACAG  1092

seq1  GTAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCG-TCAGAT  1142
        | || |||   | |   | ||||||||||||||| | || | ||||||
seq2  TGAGGTGCACCTGAAC--GCCTCAGACACACCAGAAAAAGGTGCTCAGAT  1140

seq1  CTCGTTACAGATGGTTG  1159
       || |||||||||||||
seq2  -TCTTTACAGATGGTTG  1156