BAC Information

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BAC

Clone NameB6Ng01-073I02
Chromosome13 (Build37)
Map Location 112,285,407 - 112,436,793
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040614, LOC668159, 4732495G21Rik, LOC100040640, EG621953, Gpbp1
Downstream geneLOC100040666, Mier3, Map3k1, LOC668181, LOC100040716, LOC100041161, LOC100041175, Ankrd55, LOC100040725, Il6st, Il31ra, LOC100041240, Ddx4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073I02.bB6Ng01-073I02.g
ACCDH890615DH890616
length1,1711,134
definitionDH890615|Mus musculus domesticus DNA, BAC clone: B6Ng01-073I02, 5' end.DH890616|Mus musculus domesticus DNA, BAC clone: B6Ng01-073I02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,285,407 - 112,286,582)(112,435,637 - 112,436,793)
sequence
gaattctttccttcacctgctccgcttctcaaagccttactatcttcaaa
gacccagttgaagcaacaacatcccgcaagataaagtgtgaccctcctct
ggaactacatgcacattttatccggcctcctttgtaacctttcctgatag
aggctatgggacactgttcttttttacagtttcttttaatattttgctct
ccacccccctccccttttttgttgataagacctcactatgtatctgtggc
tatccttgaactttcacaatcctgcctctgccttccaagtgctgagatta
tgggcatgtctcaccaagtctgtctttcagggacttatgctattcatccg
ctctgccccgccagtgttcaacccctagcagaattcaataaaaggcaggt
ttttgagacatggtcttgctaattcaaatgaccccacacgcacactctac
ctgcctccaccccttgagtgccaggattataagcatgtacccctccctcc
ccacatggctcgtaagttgagttttactgcttcctgatgctcccttagta
tagccaggcagtggaagcacctgctctatcattagcagaccagtctccga
ggcgactgccgaggtaaaatacaaagaagtctccccatcttttcattttt
gaggttctgcctctccacagataattcaaacggaagctcaagtgtcttac
ttggagaaaaatcagaaacacagagagtatctccttggcatgtccacatc
ctccttaatttctggcaagtttcacagatatgtgctactgatcaatgagt
ctgtctcctcaaaggatggcaagaagagctcatgcgctgctcactacaac
atccccagtacctagtgcaaggctggcctagggcaggcaatacattataa
agaatgaagagttaataaacattattatgtactatttatttagccatagt
ggagcctgatacatgctagcaatattctagtctcaatttatattccaacc
cagacttttttttaaagaacatttcaggagtacagtgttgtgttttgctt
tgttttagctattcattggtgagaaagctaaagagatgtctccagtgtga
agagacctgactgaagtctagaaggatcccagctcaatcctagccatcta
cattggcagttcgtaccttgt
gaattcaatatgccttcttcctctcacccgacccagagttgtttccttcc
tactcgtgagaccattttcccacaacccatctacatagccactttctgct
tttctttgatttcttccaagagctgacacctgtgcccagctgctgaagca
gatatcactaatggtttttgcagaagttgtggcttcagaggctgcaccag
atccgtgcgtgactgcacatccctgtgcgcagagcataggcttaaacgcc
caggtgggaaatgataaatacaactgctggagtggacgccattaatggtc
tttgcagaaatggtgccgttagatcctttaccacgtgggcccttgaactc
ccaatagcagccagggtgatacattctggtctgacaaaagttgttaaaca
cgtctttcttattaaaactcagtcttgtatgaggactggattggaacaaa
gcaggaacttagattaaaaaaatcttctctagcttgaaaaacagaaaaac
aaaagcaagtgctatggcaggataggctggtttctacagttcctctggat
ccctctaattcttgatctgtaggggcctctttgtcctctggctttcagaa
gcactataagcatggtgtatggcagctgtggaccccgagtggcctacctt
gttctccttactgcatccagacactgtggagccttccagacactgaaaat
cctatccttccccgtgatctagttcttctaattctatgggtgttacctga
ctgaaagcactggttgttagaactggctcttctaacatgtgacctgagga
ccaaagacatcagtgtcacttccacgtatctcacgccagcactcacgttt
gtgcacaaacactctcactcctctagctattaaacgtgagattttagcta
atcaaatccaacggtgtattaaaagaccaatgagtttgttgaaaatatgt
gaagtagatcttatatttaaatcatcatatacctaccacatcacaaaaag
gatatacgatcccataattgataagaaaatgtcttgataagtttatcaat
cattcttttacagatctccagtctttagccgagattctgtcttggaaagg
cttgaaatccaccaaggtaaaaaatttaaggatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_112285407_112286582
seq2: B6Ng01-073I02.b_41_1211

seq1  GAATTCTTTCCTTCACCTGCTCCGCTTCTCAAAGCCTTACTATCTTCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCTTCACCTGCTCCGCTTCTCAAAGCCTTACTATCTTCAAA  50

seq1  GACCCAGTTGAAGCAACAACATCCCGCAAGATAAAGTGTGACCCTCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGTTGAAGCAACAACATCCCGCAAGATAAAGTGTGACCCTCCTCT  100

seq1  GGAACTACATGCACATTTTATCCGGCCTCCTTTGTAACCTTTCCTGATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTACATGCACATTTTATCCGGCCTCCTTTGTAACCTTTCCTGATAG  150

seq1  AGGCTATGGGACACTGTTCTTTTTTACAGTTTCTTTTAATATTTTGCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATGGGACACTGTTCTTTTTTACAGTTTCTTTTAATATTTTGCTCT  200

seq1  CCACCCCCCTCCCCTTTTTTGTTGATAAGACCTCACTATGTATCTGTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCCTCCCCTTTTTTGTTGATAAGACCTCACTATGTATCTGTGGC  250

seq1  TATCCTTGAACTTTCACAATCCTGCCTCTGCCTTCCAAGTGCTGAGATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTGAACTTTCACAATCCTGCCTCTGCCTTCCAAGTGCTGAGATTA  300

seq1  TGGGCATGTCTCACCAAGTCTGTCTTTCAGGGACTTATGCTATTCATCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATGTCTCACCAAGTCTGTCTTTCAGGGACTTATGCTATTCATCCG  350

seq1  CTCTGCCCCGCCAGTGTTCAACCCCTAGCAGAATTCAATAAAAGGCAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCCCGCCAGTGTTCAACCCCTAGCAGAATTCAATAAAAGGCAGGT  400

seq1  TTTTGAGACATGGTCTTGCTAATTCAAATGACCCCACACGCACACTCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGACATGGTCTTGCTAATTCAAATGACCCCACACGCACACTCTAC  450

seq1  CTGCCTCCACCCCTTGAGTGCCAGGATTATAAGCATGTACCCCTCCCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCACCCCTTGAGTGCCAGGATTATAAGCATGTACCCCTCCCTCC  500

seq1  CCACATGGCTCGTAAGTTGAGTTTTACTGCTTCCTGATGCTCCCTTAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGGCTCGTAAGTTGAGTTTTACTGCTTCCTGATGCTCCCTTAGTA  550

seq1  TAGCCAGGCAGTGGAAGCACCTGCTCTATCATTAGCAGACCAGTCTCCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGGCAGTGGAAGCACCTGCTCTATCATTAGCAGACCAGTCTCCGA  600

seq1  GGCGACTGCCGAGGTAAAATACAAAGAAGTCTCCCCATCTTTTCATTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGACTGCCGAGGTAAAATACAAAGAAGTCTCCCCATCTTTTCATTTTT  650

seq1  GAGGTTCTGCCTCTCCACAGATAATTCAAACGGAAGCTCAAGTGTCTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTCTGCCTCTCCACAGATAATTCAAACGGAAGCTCAAGTGTCTTAC  700

seq1  TTGGAGAAAAATCAGAAACACAGAGAGTATCTCCTTGGCATGTCCACATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAAAAATCAGAAACACAGAGAGTATCTCCTTGGCATGTCCACATC  750

seq1  CTCCTTAATTTCTGGCAAGTTTCACAGATATGTGCTACTGATCAATGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTAATTTCTGGCAAGTTTCACAGATATGTGCTACTGATCAATGAGT  800

seq1  CTGTCTCCTCAAAGGATGGCAAGAAGAGCTCATGCGCTGCTCACTACAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCCTCAAAGGATGGCAAGAAGAGCTCATGCGCTGCTCACTACAAC  850

seq1  ATCCCCAGTACCTAGTGCAAGGCTGGCCTAGGGCAGGCAATACATTATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCAGTACCTAGTGCAAGGCTGGCCTAGGGCAGGCAATACATTATAA  900

seq1  AGAATGAAGAGTTAATAAACATTATTATGTACTATTTATTTAGCCATAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAAGAGTTAATAAACATTATTATGTACTATTTATTTAGCCATAGT  950

seq1  GGAGCCTGATACATGCTAGGCAAATATTCTAGTCTCAATTTATATTCCAA  1000
      |||||||||||||||||||   |||||||||||||||||||||||||| |
seq2  GGAGCCTGATACATGCTAG--CAATATTCTAGTCTCAATTTATATTCC-A  997

seq1  ACACAGACTTTTTTTTAAAGAACAATTTCAGGAGTACAGTGTTGTGGTTT  1050
      || |||||||||||||||||||| ||||||||||||||||||||| ||||
seq2  ACCCAGACTTTTTTTTAAAGAAC-ATTTCAGGAGTACAGTGTTGT-GTTT  1045

seq1  TGCTTTGTTTTAGCTA-TCATT-GTGAGAAGGCTAAAGAGATGTCT-CAG  1097
      |||||||||||||||| ||||| ||||||| ||||||||||||||| |||
seq2  TGCTTTGTTTTAGCTATTCATTGGTGAGAAAGCTAAAGAGATGTCTCCAG  1095

seq1  TGGTGAAGAGCACTGACTGAAGGTCTAG-AGGATCCACACTCAATCCCTA  1146
      | ||||||||  ||||||||| |||||| |||||||   |||||| ||||
seq2  T-GTGAAGAGACCTGACTGAA-GTCTAGAAGGATCCCAGCTCAAT-CCTA  1142

seq1  GCAATCTACA-TGGCAGTTCGTAACCCTTGT  1176
      || ||||||| ||||||||||||  ||||||
seq2  GCCATCTACATTGGCAGTTCGTA--CCTTGT  1171

seq1: chr13_112435637_112436793
seq2: B6Ng01-073I02.g_69_1202 (reverse)

seq1  GATCCTTAAATTTTTTTTCTCCTTTGGTTGATTCTCAAAGCTTTTCAAGA  50
      |||||||||||||||    | | ||||| |||| ||||  |||| |||||
seq2  GATCCTTAAATTTTT----TACCTTGGTGGATT-TCAAGCCTTTCCAAGA  45

seq1  CAGAAATCTCTGTGCCTAAAAGACTGGGAGATTTTTGTAAAAGAATGATT  100
      ||| ||||||   | || ||||||| |||||  | |||||||||||||||
seq2  CAG-AATCTC---GGCT-AAAGACT-GGAGA--TCTGTAAAAGAATGATT  87

seq1  GATAAACTTTATCAAGACATTTTCTGTATCAATTAATGGGATCGTATATC  150
      ||||||| ||||||||||||||||| |||||||| |||||||||||||||
seq2  GATAAAC-TTATCAAGACATTTTCT-TATCAATT-ATGGGATCGTATATC  134

seq1  TTTTTTTGTGATGTGGTAGGTTATACTGATTGATTTTAAATATTAGATCT  200
        |||||||||||||||||| |||| ||| ||| ||||||||| ||||||
seq2  -CTTTTTGTGATGTGGTAGG-TATA-TGA-TGA-TTTAAATATAAGATCT  179

seq1  ACTTCACATATTTTCAACAAACTCCATTTGGTCTTTTAATACACCGTTGG  250
      ||||||||||||||||||||||||   |||||||||||||||||||||||
seq2  ACTTCACATATTTTCAACAAACTC--ATTGGTCTTTTAATACACCGTTGG  227

seq1  ATTTGATTAGCTAAAATCTCACGTTTAATAGCTAGGGGAGTGAGAGTGTT  300
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATTTGATTAGCTAAAATCTCACGTTTAATAGCTAGAGGAGTGAGAGTGTT  277

seq1  TGTGCACAAACGTGAGTGCTGGCGTGAGATACGTGGAAGTGACACTGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACAAACGTGAGTGCTGGCGTGAGATACGTGGAAGTGACACTGATG  327

seq1  TCTTTGGTCCTCAGGTCACATGTTAGAAGAGCCAGTTCTAACAACCAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGTCCTCAGGTCACATGTTAGAAGAGCCAGTTCTAACAACCAGTG  377

seq1  CTTTCAGTCAGGTAACACCCATAGAATTAGAAGAACTAGATCACGGGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGTCAGGTAACACCCATAGAATTAGAAGAACTAGATCACGGGGAA  427

seq1  GGATAGGATTTTCAGTGTCTGGAAGGCTCCACAGTGTCTGGATGCAGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGGATTTTCAGTGTCTGGAAGGCTCCACAGTGTCTGGATGCAGTAA  477

seq1  GGAGAACAAGGTAGGCCACTCGGGGTCCACAGCTGCCATACACCATGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAACAAGGTAGGCCACTCGGGGTCCACAGCTGCCATACACCATGCTT  527

seq1  ATAGTGCTTCTGAAAGCCAGAGGACAAAGAGGCCCCTACAGATCAAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGCTTCTGAAAGCCAGAGGACAAAGAGGCCCCTACAGATCAAGAAT  577

seq1  TAGAGGGATCCAGAGGAACTGTAGAAACCAGCCTATCCTGCCATAGCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGGATCCAGAGGAACTGTAGAAACCAGCCTATCCTGCCATAGCACT  627

seq1  TGCTTTTGTTTTTCTGTTTTTCAAGCTAGAGAAGATTTTTTTAATCTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTGTTTTTCTGTTTTTCAAGCTAGAGAAGATTTTTTTAATCTAAG  677

seq1  TTCCTGCTTTGTTCCAATCCAGTCCTCATACAAGACTGAGTTTTAATAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCTTTGTTCCAATCCAGTCCTCATACAAGACTGAGTTTTAATAAG  727

seq1  AAAGACGTGTTTAACAACTTTTGTCAGACCAGAATGTATCACCCTGGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACGTGTTTAACAACTTTTGTCAGACCAGAATGTATCACCCTGGCTG  777

seq1  CTATTGGGAGTTCAAGGGCCCACGTGGTAAAGGATCTAACGGCACCATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGGGAGTTCAAGGGCCCACGTGGTAAAGGATCTAACGGCACCATTT  827

seq1  CTGCAAAGACCATTAATGGCGTCCACTCCAGCAGTTGTATTTATCATTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAAGACCATTAATGGCGTCCACTCCAGCAGTTGTATTTATCATTTC  877

seq1  CCACCTGGGCGTTTAAGCCTATGCTCTGCGCACAGGGATGTGCAGTCACG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGGGCGTTTAAGCCTATGCTCTGCGCACAGGGATGTGCAGTCACG  927

seq1  CACGGATCTGGTGCAGCCTCTGAAGCCACAACTTCTGCAAAAACCATTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGATCTGGTGCAGCCTCTGAAGCCACAACTTCTGCAAAAACCATTAG  977

seq1  TGATATCTGCTTCAGCAGCTGGGCACAGGTGTCAGCTCTTGGAAGAAATC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATCTGCTTCAGCAGCTGGGCACAGGTGTCAGCTCTTGGAAGAAATC  1027

seq1  AAAGAAAAGCAGAAAGTGGCTATGTAGATGGGTTGTGGGAAAATGGTCTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAGCAGAAAGTGGCTATGTAGATGGGTTGTGGGAAAATGGTCTC  1077

seq1  ACGAGTAGGAAGGAAACAACTCTGGGTCGGGTGAGAGGAAGAAGGCATAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGTAGGAAGGAAACAACTCTGGGTCGGGTGAGAGGAAGAAGGCATAT  1127

seq1  TGAATTC  1157
      |||||||
seq2  TGAATTC  1134