BAC Information

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BAC

Clone NameB6Ng01-074O16
Chromosome13 (Build37)
Map Location 44,086,846 - 44,108,410
singlet/doubletdoublet
Overlap genenone
Upstream genePhactr1, Tbc1d7, Gfod1, Sirt5, Nol7, Ranbp9, LOC637627, Ccdc90a, Rnf182, LOC100039403, Cd83, LOC100039432
Downstream geneA730030A06, EG637868, EG667157, Jarid2, Dtnbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074O16.bB6Ng01-074O16.g
ACCDH891632DH891633
length1,1571,106
definitionDH891632|Mus musculus domesticus DNA, BAC clone: B6Ng01-074O16, 5' end.DH891633|Mus musculus domesticus DNA, BAC clone: B6Ng01-074O16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,086,846 - 44,088,010)(44,107,321 - 44,108,410)
sequence
gaattctagttaattccacatgtttatgctatctctaccccatataatac
ctggaagaggaaactggattgatcattcagatagcataaaacatgccagg
aattagcaaaagggggcttctctcttcttcccagaatgcaggagagggct
ctgagcagatctcttcacaatgccatacaagccttagaaaaaggtactcc
ctcccctgacgcccttacctagctgctgggctgcagacaccgctgtaaga
agcaaacttcacatggcagcctgtcagcggctgtgggcaaacactggaag
acgactgcattatttatgatcattatttattttctggtgttcaaatattt
acctttctttcttttcttttgcaaacagtttagtgggcagtggggaaacc
ctgcctcctgctaaagaggttgagctttgtttccggaggccaagtccagt
taaagacgctgaccacgcttcccagagctgggctggccaaaagccagcaa
agagtactgcctcattcttgtgactacattgcttcaaagaatgagttggc
ttatcctgaagggattctcttctaatgaattggctgtcagtctgggctgc
gcccttgcctggcatctgtcccactggttactcagaccttggtttgtttg
tttgttttgttttgtcttttgtctgcttctgtcatcattgatctatgatg
tttagacttaggttaatgtggtagttaacgttcaacttggttagatttag
aatcacttaggagccataactctgcgtaggcctttagtgtttctcccaat
ggactaatgtgggtggtggagtcccaagatgattaaaaaaaaatcaagta
tggagatctctgttcatctccatctacttcctgactgtggatatggcgtg
accagccactccacacttccaccatcttgcctttgcttccatgatatact
gtatcccttcagatcatgagccaagatctcttcagaaatagaatacttct
ccctttcaagtgctgttttcaaggattgatcacaggaattaaaaaaaaaa
aaaagtaatttcagtgggctgattgtaactcagtttgttgatgtatctag
tatccatgaagcctaatgtttgagcctgcataggtgggtatggtgcgcca
gtctgta
gaattccatggtatgaaaccctgcccaagaaagttcacacctgaggagag
tttgactaagtctccaaagccagcgttttttcccggggaggggcttatca
cacattcttctgtgggctgttgccttgggaatgttactgcatagcaagac
atttttgtccatcacacatgtcttcccatcactcactcaccataggattg
tctggagccagtaactacaaaggccttgaggttcacaaggtggcaaccac
atcctgggacctgggatacgtgtgtatttatttaatgctccagttccttt
ctatgctctgccctgtggtttataatgatgctttttactttagaactaaa
tgttcatatgctttctaaagaaatattgcccacattcgaagaccatttga
atgggaataaaaactacctcacgaagtctaagctagtttctaccttgtct
gttgaacatctggtaagttctctcctggtatgctgcctcatatttggacc
ctacatttgttcatttgttttagatcgtgtctcatgtagcccaagctgga
ctcaaaccactatgttgacaaggatgactttgaactctgaatcttcctac
ttctgtttccggagttctaggattacagatatgcaccacagtacacctgg
ctccttcatggtccctatgtctttaaacttctaaactttcgattttccag
acttcaacaattctgtgctaaaattatggtcttgtgaggaggattcaagc
tcatctgtactctaccaccacctctgcctcctgtagatcaaacagccaga
gattcctgtttcttcaagaggcctgcaaccacccccacccttgaaggcca
atgatagtagtttgtggaaaatggatttctgactatccagccttcctaag
attaagaaatggacgtctgagggagaaggatgaagttaactagcctagct
agttggtgatggggggaaacggaaggcagtcaaagccatttcactagaag
ctgcgtcaccctagtggctagaggtgtggggaacagtttggactccctgt
tgactacctcaaccggtaagggacccatcccaagctgactgtgaacccag
tatggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_44086846_44088010
seq2: B6Ng01-074O16.b_49_1205

seq1  GAATTCTAGTTAATTCCACATGTTTATGCTATCTCTACCCCATATAATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTTAATTCCACATGTTTATGCTATCTCTACCCCATATAATAC  50

seq1  CTGGAAGAGGAAACTGGATTGATCATTCAGATAGCATAAAACATGCCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGAGGAAACTGGATTGATCATTCAGATAGCATAAAACATGCCAGG  100

seq1  AATTAGCAAAAGGGGGCTTCTCTCTTCTTCCCAGAATGCAGGAGAGGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGCAAAAGGGGGCTTCTCTCTTCTTCCCAGAATGCAGGAGAGGGCT  150

seq1  CTGAGCAGATCTCTTCACAATGCCATACAAGCCTTAGAAAAAGGTACTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCAGATCTCTTCACAATGCCATACAAGCCTTAGAAAAAGGTACTCC  200

seq1  CTCCCCTGACGCCCTTACCTAGCTGCTGGGCTGCAGACACCGCTGTAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTGACGCCCTTACCTAGCTGCTGGGCTGCAGACACCGCTGTAAGA  250

seq1  AGCAAACTTCACATGGCAGCCTGTCAGCGGCTGTGGGCAAACACTGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACTTCACATGGCAGCCTGTCAGCGGCTGTGGGCAAACACTGGAAG  300

seq1  ACGACTGCATTATTTATGATCATTATTTATTTTCTGGTGTTCAAATATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACTGCATTATTTATGATCATTATTTATTTTCTGGTGTTCAAATATTT  350

seq1  ACCTTTCTTTCTTTTCTTTTGCAAACAGTTTAGTGGGCAGTGGGGAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCTTTCTTTTCTTTTGCAAACAGTTTAGTGGGCAGTGGGGAAACC  400

seq1  CTGCCTCCTGCTAAAGAGGTTGAGCTTTGTTTCCGGAGGCCAAGTCCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCTGCTAAAGAGGTTGAGCTTTGTTTCCGGAGGCCAAGTCCAGT  450

seq1  TAAAGACGCTGACCACGCTTCCCAGAGCTGGGCTGGCCAAAAGCCAGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACGCTGACCACGCTTCCCAGAGCTGGGCTGGCCAAAAGCCAGCAA  500

seq1  AGAGTACTGCCTCATTCTTGTGACTACATTGCTTCAAAGAATGAGTTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACTGCCTCATTCTTGTGACTACATTGCTTCAAAGAATGAGTTGGC  550

seq1  TTATCCTGAAGGGATTCTCTTCTAATGAATTGGCTGTCAGTCTGGGCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTGAAGGGATTCTCTTCTAATGAATTGGCTGTCAGTCTGGGCTGC  600

seq1  GCCCTTGCCTGGCATCTGTCCCACTGGTTACTCAGACCTTGGTTTGTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGCCTGGCATCTGTCCCACTGGTTACTCAGACCTTGGTTTGTTTG  650

seq1  TTTGTTTTGTTTTGTCTTTTGTCTGCTTCTGTCATCATTGATCTATGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTTTTGTCTTTTGTCTGCTTCTGTCATCATTGATCTATGATG  700

seq1  TTTAGACTTAGGTTAATGTGGTAGTTAACGTTCAACTTGGTTAGATTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGACTTAGGTTAATGTGGTAGTTAACGTTCAACTTGGTTAGATTTAG  750

seq1  AATCACTTAGGAGCCATAACTCTGCGTAGGCCTTTAGTGTTTCTCCCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AATCACTTAGGAGCCATAACTCTGCGTAGGCCTTTAGTGTTTCTCCC-AA  799

seq1  TGGACTAATGTGGGTGGTGGAGTCCCAAGATGATTAAAAAAAAATCAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTAATGTGGGTGGTGGAGTCCCAAGATGATTAAAAAAAAATCAAGT  849

seq1  ATGGAGATCTCTGTTCATCTCCATCTACTTCCTGACTGTGGATATGGCGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGATCTCTGTTCATCTCCATCTACTTCCTGACTGTGGATATGGCGT  899

seq1  GACCAGCCACTCCACACTTCCACCATCTTGCCTTTGCTTCCATGATATAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGCCACTCCACACTTCCACCATCTTGCCTTTGCTTCCATGATATAC  949

seq1  TGTATCCCTTCAGATCATGAGCCAAGATCTCTTCAGAAATAAGAATACTT  1000
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGTATCCCTTCAGATCATGAGCCAAGATCTCTTCAGAAAT-AGAATACTT  998

seq1  CTCCC-TTCAAGTGCTGTTTTTCAGGGATTTGATCACAGGAAT---AAAA  1046
      ||||| ||||||||||| |||||| ||| ||||||||||||||   ||||
seq2  CTCCCTTTCAAGTGCTG-TTTTCAAGGA-TTGATCACAGGAATTAAAAAA  1046

seq1  AAAAAAAAGTAATTTCAAGTGGGCTGGATTTGTAACTCAGTTTGTTGAAT  1096
      |||||||||||||||| |||||||||   |||||||||||||||||||  
seq2  AAAAAAAAGTAATTTC-AGTGGGCTG--ATTGTAACTCAGTTTGTTGA--  1091

seq1  GTTTATCTAGTATCCATGAAGCCTAGTGTTTGAGCCCTGCATAGTGGTGT  1146
       | |||||||||||||||||||||| |||||||| |||||||||  | ||
seq2  -TGTATCTAGTATCCATGAAGCCTAATGTTTGAG-CCTGCATAGGTGGGT  1139

seq1  ATGGTGGCGCACGTCTGTA  1165
      ||||| ||||  |||||||
seq2  ATGGT-GCGCCAGTCTGTA  1157

seq1: chr13_44107321_44108410
seq2: B6Ng01-074O16.g_70_1175 (reverse)

seq1  GCCATA-TTGGTTC-CAGTCAGCTTGGGAT-GGTCCCTTACTGTCTGA-G  46
      |||||| | ||||| ||||||||||||||| |||||||||| |  ||| |
seq2  GCCATACTGGGTTCACAGTCAGCTTGGGATGGGTCCCTTACCGGTTGAGG  50

seq1  TAGTC-ACAGGATGTCC-CACTGTCCCACA-ACCTCTAGCCACTA-GGTG  92
      ||||| |||||  ||||  ||||| || || |||||||||||||| ||||
seq2  TAGTCAACAGGGAGTCCAAACTGTTCCCCACACCTCTAGCCACTAGGGTG  100

seq1  ACGCAGCATCTAGTGAA--TGCCTTGACTGCC-TCCGTTT-CCCCCATCA  138
      ||||||| |||||||||   || ||||||||| ||||||| |||||||||
seq2  ACGCAGCTTCTAGTGAAATGGCTTTGACTGCCTTCCGTTTCCCCCCATCA  150

seq1  CCAACTAGCTA-GCTAGTTTACCTCAT-CTTCTCCCTCAGACGTCCATTT  186
      ||||||||||| ||||||| || |||| ||||||||||||||||||||||
seq2  CCAACTAGCTAGGCTAGTTAACTTCATCCTTCTCCCTCAGACGTCCATTT  200

seq1  CTTAATCTTAGG-AGGCTGGATAGTCAGAAATCCATTTTCCAC-AACTAC  234
      |||||||||||| |||||||||||||||||||||||||||||| ||||||
seq2  CTTAATCTTAGGAAGGCTGGATAGTCAGAAATCCATTTTCCACAAACTAC  250

seq1  TTATCATTGGCCTTCAAGGGTGGGGGTGGTTGCAGGCCTCTTGAAGAAAC  284
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TATCATTGGCCTTCAAGGGTGGGGGTGGTTGCAGGCCTCTTGAAGAAAC  299

seq1  AGGAATCTCTGGCTGTTTGATCTACAGGAGGCAGAGGTGGTGGTAGAGTA  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCTCTGGCTGTTTGATCTACAGGAGGCAGAGGTGGTGGTAGAGTA  349

seq1  CAGATGAGCTTGAATCCTCCTCACAAGACCATAATTTTAGCACAGAATTG  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGAGCTTGAATCCTCCTCACAAGACCATAATTTTAGCACAGAATTG  399

seq1  TTGAAGTCTGGAAAATCG-AAGTTTAGAAGTTTAAAGACATAGGGACCAT  433
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTGAAGTCTGGAAAATCGAAAGTTTAGAAGTTTAAAGACATAGGGACCAT  449

seq1  GAAGGAGCCAGGTGTACTGTGGTGCATATCTGTAATCCTAGAACTCCGGA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGCCAGGTGTACTGTGGTGCATATCTGTAATCCTAGAACTCCGGA  499

seq1  AACAGAAGTAGGAAGATTCAGAGTTCAAAGTCATCCTTGTCAACATAGTG  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAGTAGGAAGATTCAGAGTTCAAAGTCATCCTTGTCAACATAGTG  549

seq1  GTTTGAGTCCAGCTTGGGCTACATGAGACACGATCTAAAACAAATGAACA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGTCCAGCTTGGGCTACATGAGACACGATCTAAAACAAATGAACA  599

seq1  AATGTAGGGTCCAAATATGAGGCAGCATACCAGGAGAGAACTTACCAGAT  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGGGTCCAAATATGAGGCAGCATACCAGGAGAGAACTTACCAGAT  649

seq1  GTTCAACAGACAAGGTAGAAACTAGCTTAGACTTCGTGAGGTAGTTTTTA  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAACAGACAAGGTAGAAACTAGCTTAGACTTCGTGAGGTAGTTTTTA  699

seq1  TTCCCATTCAAATGGTCTTCGAATGTGGGCAATATTTCTTTAGAAAGCAT  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATTCAAATGGTCTTCGAATGTGGGCAATATTTCTTTAGAAAGCAT  749

seq1  ATGAACATTTAGTTCTAAAGTAAAAAGCATCATTATAAACCACAGGGCAG  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACATTTAGTTCTAAAGTAAAAAGCATCATTATAAACCACAGGGCAG  799

seq1  AGCATAGAAAGGAACTGGAGCATTAAATAAATACACACGTATCCCAGGTC  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGAAAGGAACTGGAGCATTAAATAAATACACACGTATCCCAGGTC  849

seq1  CCAGGATGTGGTTGCCACCTTGTGAACCTCAAGGCCTTTGTAGTTACTGG  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATGTGGTTGCCACCTTGTGAACCTCAAGGCCTTTGTAGTTACTGG  899

seq1  CTCCAGACAATCCTATGGTGAGTGAGTGATGGGAAGACATGTGTGATGGA  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGACAATCCTATGGTGAGTGAGTGATGGGAAGACATGTGTGATGGA  949

seq1  CAAAAATGTCTTGCTATGCAGTAACATTCCCAAGGCAACAGCCCACAGAA  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATGTCTTGCTATGCAGTAACATTCCCAAGGCAACAGCCCACAGAA  999

seq1  GAATGTGTGATAAGCCCCTCCCCGGGAAAAAACGCTGGCTTTGGAGACTT  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGTGATAAGCCCCTCCCCGGGAAAAAACGCTGGCTTTGGAGACTT  1049

seq1  AGTCAAACTCTCCTCAGGTGTGAACTTTCTTGGGCAGGGTTTCATACCAT  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAACTCTCCTCAGGTGTGAACTTTCTTGGGCAGGGTTTCATACCAT  1099

seq1  GGAATTC  1090
      |||||||
seq2  GGAATTC  1106