BAC Information

Click to search

BAC

Clone NameB6Ng01-074P17
Chromosome13 (Build37)
Map Location 63,777,356 - 63,933,386
singlet/doubletdoublet
Overlap geneC030010C08Rik, 0610007P08Rik
Upstream geneEG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik, Fancc, Ptch1
Downstream gene9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074P17.bB6Ng01-074P17.g
ACCDH891680DH891681
length1,1391,042
definitionDH891680|Mus musculus domesticus DNA, BAC clone: B6Ng01-074P17, 5' end.DH891681|Mus musculus domesticus DNA, BAC clone: B6Ng01-074P17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,777,356 - 63,778,491)(63,932,340 - 63,933,386)
sequence
gaattctgggaaattatcaggcatgagagattcacctggaatgctaatgg
agacagatatgtaaaccggtggagaggtaactaaccacatgggagaactt
agtctagaataaactggattactgagatatgagctagtcagttaatgcta
acttagcattttggcttaggcattgcattcatgaaatattaagtctcaga
tttgttatttcagggaacaaagtgactgggtagaaacaaaccagttacat
ctggttcttggttgtttcgactcttcattcatgaagtggctctctgacca
cttcagagaggcactgatctctcccttctcctgtaatagctgtagtagag
actacaatttctagaacatctctttttagttatagaaaaccctgagattg
agctgatgaaaggctgtctagatagacatctcaattaccacatcttgttc
taaatgctgttacagtccttgtcgtgggggcagaagagtttctgttcatt
agagtaaagcccctttcttccccctgaagccacctcagtcatgaacacaa
aactgactagagaagatcccttagtatccatctaagccacaggtcaagaa
taatggagccattcatagacactctgaggcctgcttgtcatagtagctta
ttgggacatcctagatacttaaaagttaaggcaccgcaactggaagatgc
acattcccttctcatgcattacttgctcaagttgcagagacagggcagac
atttcatgccatcgcttgtcatgtgctttacaaggtggggactcgtgata
aactgtcaagtagctctgattcagacgggcatgtgttgacaagggcatag
tgttgctatgctgcttcaatgcaaagtagatgctatccatcaaccatgct
acccctctgccatgcttggacaaacagacaaacaaactaacaactgtaaa
acctctttgtctctaagatgtcagcagccatgactgcctattggaactca
ttcaaagtcaaattccagtataccattcccggagcttctagatcatgcac
ttactttgtggaagatcagcttcctactggggtgaagatcattttagcag
tttttttgtagaaaacatcttcttgattttttcccctct
gaattcattggcacttatatttcatgcattcctcaaagacttattcatac
ctgaaaagttttagaatacatataaaataatctctcttacacatacatac
agccttagttcaaactactaactcataatttgtaatatttaatttattca
ttgtttatttttcaaggagattgaaatcggtctttcaggattctgttttg
attctggcattatctttatctttattttatttattctcttacccacaaaa
cttaagaaatgtatgccacttcaaatggactctctgaaaacatatatgca
ctgctgccaaccaagtgaagaacaaatatggaaaccaatctgtaacagag
ctgtgacacctggaaaggagtcccagcagagtaaaacagctcagaaagac
agcaatgagtataccactcccacccctcacagaactgagaaggccatatt
gtacctatgagaaagaaatcatgaaacaaatagccataaaaacaacaaca
gaacccaacagactgaagcagttggaaggatcagatcaataaaagcaatg
cccagggattttaagaaaaactagtggaatcagtctcttgtaaaaaaaag
tttactctgccaccaatacttagaatcccctataaaaatgtactctacat
atttttaaattaagaaaaaatatttactaaatttctgtttttatacatat
gtgcaccacatgcatgcaggagcctatagagaccagagcatcagatctcc
tagaactggggttaaaatggttgtaagctatgtatgctaggaaccaaact
ctggtcctctgcaagagcagtaaattctcctaagtgtagagccatctatc
tagcctctgggcacatttttcaaaagtgaacttatttggtagaattctac
agtacatattagagctttgcagtgtggagggattcaaagatggaatctta
ggtattcccttcattgaacaaaaaatcagttagcattgaaccattattct
aatgtacaacagaaaatattttatcttttttatattatttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_63777356_63778491
seq2: B6Ng01-074P17.b_44_1182

seq1  GAATTCTGGGAAATTATCAGGCATGAGAGATTCACCTGGAATGCTAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAAATTATCAGGCATGAGAGATTCACCTGGAATGCTAATGG  50

seq1  AGACAGATATGTAAACCGGTGGAGAGGTAACTAACCACATGGGAGAACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGATATGTAAACCGGTGGAGAGGTAACTAACCACATGGGAGAACTT  100

seq1  AGTCTAGAATAAACTGGATTACTGAGATATGAGCTAGTCAGTTAATGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGAATAAACTGGATTACTGAGATATGAGCTAGTCAGTTAATGCTA  150

seq1  ACTTAGCATTTTGGCTTAGGCATTGCATTCATGAAATATTAAGTCTCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCATTTTGGCTTAGGCATTGCATTCATGAAATATTAAGTCTCAGA  200

seq1  TTTGTTATTTCAGGGAACAAAGTGACTGGGTAGAAACAAACCAGTTACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTATTTCAGGGAACAAAGTGACTGGGTAGAAACAAACCAGTTACAT  250

seq1  CTGGTTCTTGGTTGTTTCGACTCTTCATTCATGAAGTGGCTCTCTGACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCTTGGTTGTTTCGACTCTTCATTCATGAAGTGGCTCTCTGACCA  300

seq1  CTTCAGAGAGGCACTGATCTCTCCCTTCTCCTGTAATAGCTGTAGTAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAGAGGCACTGATCTCTCCCTTCTCCTGTAATAGCTGTAGTAGAG  350

seq1  ACTACAATTTCTAGAACATCTCTTTTTAGTTATAGAAAACCCTGAGATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAATTTCTAGAACATCTCTTTTTAGTTATAGAAAACCCTGAGATTG  400

seq1  AGCTGATGAAAGGCTGTCTAGATAGACATCTCAATTACCACATCTTGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATGAAAGGCTGTCTAGATAGACATCTCAATTACCACATCTTGTTC  450

seq1  TAAATGCTGTTACAGTCCTTGTCGTGGGGGCAGAAGAGTTTCTGTTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCTGTTACAGTCCTTGTCGTGGGGGCAGAAGAGTTTCTGTTCATT  500

seq1  AGAGTAAAGCCCCTTTCTTCCCCCTGAAGCCACCTCAGTCATGAACACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAAGCCCCTTTCTTCCCCCTGAAGCCACCTCAGTCATGAACACAA  550

seq1  AACTGACTAGAGAAGATCCCTTAGTATCCATCTAAGCCACAGGTCAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGACTAGAGAAGATCCCTTAGTATCCATCTAAGCCACAGGTCAAGAA  600

seq1  TAATGGAGCCATTCATAGACACTCTGAGGCCTGCTTGTCATAGTAGCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGAGCCATTCATAGACACTCTGAGGCCTGCTTGTCATAGTAGCTTA  650

seq1  TTGGGACATCCTAGATACTTAAAAGTTAAGGCACCGCAACTGGAAGATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGACATCCTAGATACTTAAAAGTTAAGGCACCGCAACTGGAAGATGC  700

seq1  ACATTCCCTTCTCATGCATTACTTGCTCAAGTTGCAGAGACAGGGCAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCCTTCTCATGCATTACTTGCTCAAGTTGCAGAGACAGGGCAGAC  750

seq1  ATTTCATGCCATCGCTTGTCATGTGCTTTACAAGGTGGGGACTCGTGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATGCCATCGCTTGTCATGTGCTTTACAAGGTGGGGACTCGTGATA  800

seq1  AACTGTCAAGTAGCTCTGATTCAGACGGGCATGTGTTGACAAGGGCATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCAAGTAGCTCTGATTCAGACGGGCATGTGTTGACAAGGGCATAG  850

seq1  TGTTGCTATGCTGCTTCAATGCAAAGTAGATGCTATCCATCAACCATGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTATGCTGCTTCAATGCAAAGTAGATGCTATCCATCAACCATGCT  900

seq1  ACCCCTCTGCCATGCTTGGACAAACAGACAAACAAACTAACAACTGTAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTCTGCCATGCTTGGACAAACAGACAAACAAACTAACAACTGTAAA  950

seq1  ACCTCTTTGTCTCTAAGATGTCAGCAGCCATGACTGCCTATTGGAACTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTTGTCTCTAAGATGTCAGCAGCCATGACTGCCTATTGGAACTCA  1000

seq1  TTCAAAGTCAAATTCCAGTATACCATT-CCGGAGCTTCTAGATCATGCAC  1049
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTCAAAGTCAAATTCCAGTATACCATTCCCGGAGCTTCTAGATCATGCAC  1050

seq1  TTACTTTGTGGAAGATCAAGCTTCCTACT-GGGTAGAGATCATTTTAGCA  1098
      ||||||||||||||||| ||||||||||| ||||  ||||||||||||||
seq2  TTACTTTGTGGAAGATC-AGCTTCCTACTGGGGTGAAGATCATTTTAGCA  1099

seq1  GTTTTTTGTAAGAAAGCATCTTCTAGATTTTT--CCCTCT  1136
      |||||||   ||||| |||||||| |||||||  ||||||
seq2  GTTTTTTTGTAGAAAACATCTTCTTGATTTTTTCCCCTCT  1139

seq1: chr13_63932340_63933386
seq2: B6Ng01-074P17.g_68_1109 (reverse)

seq1  CCAAATAATTATAAAAAAGATAAAAATTATTTTCTGTTGTACATTTAGAT  50
      |||||||| ||||||||||||||||  ||||||||||||||||||   ||
seq2  CCAAATAA-TATAAAAAAGATAAAA--TATTTTCTGTTGTACATTAGAAT  47

seq1  AATGGTTCAATGCTAAACTGATTTTTTGTTCATTGAAGGGAATACCTAAG  100
      |||||||||||||| ||||||||||||||||| |||||||||||||||||
seq2  AATGGTTCAATGCT-AACTGATTTTTTGTTCAATGAAGGGAATACCTAAG  96

seq1  ATTCCATCTTTGAAATCCCTCCACACTGCAAAGCTCTAATATGTACTGTA  150
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATTCCATCTTTG-AATCCCTCCACACTGCAAAGCTCTAATATGTACTGTA  145

seq1  GAATTCTACCAAATAAGTTCACTTTTGAAAAATGTGCCCAGAGGCTAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACCAAATAAGTTCACTTTTGAAAAATGTGCCCAGAGGCTAGAT  195

seq1  AGATGGCTCTACACTTAGGAGAATTTACTGCTCTTGCAGAGGACCAGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCTCTACACTTAGGAGAATTTACTGCTCTTGCAGAGGACCAGAGT  245

seq1  TTGGTTCCTAGCATACATAGCTTACAACCATTTTAACCCCAGTTCTAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCCTAGCATACATAGCTTACAACCATTTTAACCCCAGTTCTAGGA  295

seq1  GATCTGATGCTCTGGTCTCTATAGGCTCCTGCATGCATGTGGTGCACATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGATGCTCTGGTCTCTATAGGCTCCTGCATGCATGTGGTGCACATA  345

seq1  TGTATAAAAACAGAAATTTAGTAAATATTTTTTCTTAATTTAAAAATATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAAAACAGAAATTTAGTAAATATTTTTTCTTAATTTAAAAATATG  395

seq1  TAGAGTACATTTTTATAGGGGATTCTAAGTATTGGTGGCAGAGTAAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTACATTTTTATAGGGGATTCTAAGTATTGGTGGCAGAGTAAACTT  445

seq1  TTTTTTACAAGAGACTGATTCCACTAGTTTTTCTTAAAATCCCTGGGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTACAAGAGACTGATTCCACTAGTTTTTCTTAAAATCCCTGGGCAT  495

seq1  TGCTTTTATTGATCTGATCCTTCCAACTGCTTCAGTCTGTTGGGTTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTATTGATCTGATCCTTCCAACTGCTTCAGTCTGTTGGGTTCTGT  545

seq1  TGTTGTTTTTATGGCTATTTGTTTCATGATTTCTTTCTCATAGGTACAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTTTTATGGCTATTTGTTTCATGATTTCTTTCTCATAGGTACAAT  595

seq1  ATGGCCTTCTCAGTTCTGTGAGGGGTGGGAGTGGTATACTCATTGCTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTTCTCAGTTCTGTGAGGGGTGGGAGTGGTATACTCATTGCTGTC  645

seq1  TTTCTGAGCTGTTTTACTCTGCTGGGACTCCTTTCCAGGTGTCACAGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGCTGTTTTACTCTGCTGGGACTCCTTTCCAGGTGTCACAGCTC  695

seq1  TGTTACAGATTGGTTTCCATATTTGTTCTTCACTTGGTTGGCAGCAGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACAGATTGGTTTCCATATTTGTTCTTCACTTGGTTGGCAGCAGTGC  745

seq1  ATATATGTTTTCAGAGAGTCCATTTGAAGTGGCATACATTTCTTAAGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTTTTCAGAGAGTCCATTTGAAGTGGCATACATTTCTTAAGTTT  795

seq1  TGTGGGTAAGAGAATAAATAAAATAAAGATAAAGATAATGCCAGAATCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTAAGAGAATAAATAAAATAAAGATAAAGATAATGCCAGAATCAA  845

seq1  AACAGAATCCTGAAAGACCGATTTCAATCTCCTTGAAAAATAAACAATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAATCCTGAAAGACCGATTTCAATCTCCTTGAAAAATAAACAATGA  895

seq1  ATAAATTAAATATTACAAATTATGAGTTAGTAGTTTGAACTAAGGCTGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTAAATATTACAAATTATGAGTTAGTAGTTTGAACTAAGGCTGTA  945

seq1  TGTATGTGTAAGAGAGATTATTTTATATGTATTCTAAAACTTTTCAGGTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGTAAGAGAGATTATTTTATATGTATTCTAAAACTTTTCAGGTA  995

seq1  TGAATAAGTCTTTGAGGAATGCATGAAATATAAGTGCCAATGAATTC  1047
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAGTCTTTGAGGAATGCATGAAATATAAGTGCCAATGAATTC  1042