BAC Information

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BAC

Clone NameB6Ng01-075P09
Chromosome13 (Build37)
Map Location 64,388,209 - 64,423,060
singlet/doubletdoublet
Overlap gene1110018J18Rik
Upstream gene2010111I01Rik, Fancc, Ptch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b
Downstream geneCtsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075P09.bB6Ng01-075P09.g
ACCDH892373DH892374
length1,0911,196
definitionDH892373|Mus musculus domesticus DNA, BAC clone: B6Ng01-075P09, 5' end.DH892374|Mus musculus domesticus DNA, BAC clone: B6Ng01-075P09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,388,209 - 64,389,317)(64,421,858 - 64,423,060)
sequence
gaattccctcatggggtcatgacccctggagagatctgactgttctaaga
aggctgcagcctgtgggcctcaggccccaggtcatagtttaactctacca
tctcgggtgtttgaactggctaaagtacaggtttctcataagccgggaat
gaattcttgttttccaggtgccagtagatttacacactgtcattagcctg
ctctctggttgtttgtggcccttctggaatgtcttgtaaaaaaaatgttc
tctgtgaaatgtgtgttatcgatgatggttataatagcaattccacacag
tgtgcagactgtatgggtaagatctggtgcacacagagagcatcacaaaa
tgcattgtatctacaaatttctatgttcttcacagaaacaacccccgtct
atgtaccaccatgctcccaaccatgatgctaatccccttagcatctgaaa
ctctcagcaagcacgcaaatgcctttttagcaccccccccctttttttta
aagtatatattctaccaaaagggtttcaggatttcaattctagtataatc
ttgacttgctcctgggaagttcagtgtgcattagtgtactacaggtaatt
ttataacactaacactaacacacacgcacacacacacacacacacacaca
cacacaagctcaggctggtcctgagctcccatgagtgagctgtctcccaa
gtacctggactgggactacaggtacacactacctgtggtggtttaagtaa
gaatggtccccataggctcatatatttgaatgcttagtcaccagggaatg
gaagtgtttgaaagaattagatgggttaggagctgtggccttgttagagg
aattgtgtcactgagagtggactctgaggtttcataagcccagagtctct
ctctgcaaaccaggatgtaaaagtctcagctccacccctgtctatgtgcc
acatgctcccaccatgatgctaatccccttagcatctgaactctcagcaa
gcacgcaatgcttttttttattgtactactgttttttcttttattattgg
gttttcagacagggttcttcgtgtatgcctgtagcctggaa
gaattcacagatgcttctggctctatgaaaactccttttatatgaaaccg
tatcttgttagataaggctcacaaatcacagcctggtattctgttcgtaa
gtcataatttcatttttcctccaagcaatagcaactccagaatttccagt
ctccagtttatgtaagcctcactctgtgactgactgctagaaccgggtgc
ctacgatttatgacataaccaggcctgacaaatacaagattcccctgaga
tatgacagggcccttcagaatagaacaagtatgagcaccccagggaaggc
gtatctgataaaaagaacttgccacagaagcctaatagcttgagttagat
ctccagaaaccacgtagatgaaggatatggtggcaaggatctgtcatccc
agcattcctactgtgtgtgagatgggagctggataaagggaaatcagcta
aaagggtcagctaccctgagtacatgaccaggggaagaaacaatagaaat
tctacctcaatctaggtagaaggagagaggtgccccctgacctacaattg
tagcagacgacacctccgactctacccctccccgatactaaacagatgga
aaagtagtaaaatgcatctggcttccaggtcaaccttggatgccatgtat
taatgccatttttaaagatgataagaaggaaaagtgcctgtataaatatt
gggagtaaaactctccatatttttagtagttgaacattttgtgagcaaaa
gcaaacctttattgtattttcattgttttgatctgtttgtctctgtggtt
agtttaaatgcttctctgctaagaggctgaagactgctgtcaagaaatat
gtcagccagagccgggcgtggtggcacacgccttttaatcccagaacttg
ggaggcagaagcagtggatttctgagtttcgaggccagcctggtctacaa
agtgagttccagaacagccaaagctattacagagaacccctgccttcgaa
aaccaaaccaaaccatcaaagacatgtcagccaggatgcacaaaccttta
tcaggagttgttggttaagaagttcccacaaagtcattcgaaaattccat
acaaagaaatctgaagtgaatctcttgccttttgtcgttttgggaactcg
tgtcacgtaagttttcaggaaatgtcttaggaaggaaagtttgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_64388209_64389317
seq2: B6Ng01-075P09.b_46_1136

seq1  GAATTCCCTCATGGGGTCATGACCCCTGGAGAGATCTGACTGTTCTAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCATGGGGTCATGACCCCTGGAGAGATCTGACTGTTCTAAGA  50

seq1  AGGCTGCAGCCTGTGGGCCTCAGGCCCCAGGTCATAGTTTAACTCTACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCAGCCTGTGGGCCTCAGGCCCCAGGTCATAGTTTAACTCTACCA  100

seq1  TCTCGGGTGTTTGAACTGGCTAAAGTACAGGTTTCTCATAAGCCGGGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGGGTGTTTGAACTGGCTAAAGTACAGGTTTCTCATAAGCCGGGAAT  150

seq1  GAATTCTTGTTTTCCAGGTGCCAGTAGATTTACACACTGTCATTAGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTTTTCCAGGTGCCAGTAGATTTACACACTGTCATTAGCCTG  200

seq1  CTCTCTGGTTGTTTGTGGCCCTTCTGGAATGTCTTGTAAAAAAAATGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGGTTGTTTGTGGCCCTTCTGGAATGTCTTGTAAAAAAAATGTTC  250

seq1  TCTGTGAAATGTGTGTTATCGATGATGGTTATAATAGCAATTCCACACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAAATGTGTGTTATCGATGATGGTTATAATAGCAATTCCACACAG  300

seq1  TGTGCAGACTGTATGGGTAAGATCTGGTGCACACAGAGAGCATCACAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGACTGTATGGGTAAGATCTGGTGCACACAGAGAGCATCACAAAA  350

seq1  TGCATTGTATCTACAAATTTCTATGTTCTTCACAGAAACAACCCCCGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGTATCTACAAATTTCTATGTTCTTCACAGAAACAACCCCCGTCT  400

seq1  ATGTACCACCATGCTCCCAACCATGATGCTAATCCCCTTAGCATCTGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACCACCATGCTCCCAACCATGATGCTAATCCCCTTAGCATCTGAAA  450

seq1  CTCTCAGCAAGCACGCAAATGCCTTTTTAGCACCCCCCCCCTTTTTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGCAAGCACGCAAATGCCTTTTTAGCACCCCCCCCCTTTTTTTTA  500

seq1  AAGTATATATTCTACCAAAAGGGTTTCAGGATTTCAATTCTAGTATAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATATATTCTACCAAAAGGGTTTCAGGATTTCAATTCTAGTATAATC  550

seq1  TTGACTTGCTCCTGGGAAGTTCAGTGTGCATTAGTGTACTACAGGTAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTGCTCCTGGGAAGTTCAGTGTGCATTAGTGTACTACAGGTAATT  600

seq1  TTATAACACTAACACTAACACACACGCACACACACACACACACACACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAACACTAACACTAACACACACGCACACACACACACACACACACACA  650

seq1  CACACAAGCTCAGGCTGGTCCTGAGCTCCCATGAGTGAGCTGTCTCCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAGCTCAGGCTGGTCCTGAGCTCCCATGAGTGAGCTGTCTCCCAA  700

seq1  GTACCTGGACTGGGACTACAGGTACACACTACCTGTGGTGGTTTAAGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTGGACTGGGACTACAGGTACACACTACCTGTGGTGGTTTAAGTAA  750

seq1  GAATGGTCCCCATAGGCTCATATATTTGAATGCTTAGTCACCAGGGAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGTCCCCATAGGCTCATATATTTGAATGCTTAGTCACCAGGGAATG  800

seq1  GAAGTGTTTGAAAGAATTAGATGGGTTAGGAGCTGTGGCCTTGTTAGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTTTGAAAGAATTAGATGGGTTAGGAGCTGTGGCCTTGTTAGAGG  850

seq1  AATTGTGTCACTGAGAGTGGACTCTGAGGTTTCATAAGCCCAGAGTCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGTCACTGAGAGTGGACTCTGAGGTTTCATAAGCCCAGAGTCTCT  900

seq1  CTCTGCAAACCAGGATGTAAAAGTCTCAGCTCCAACCCCTGTCTATGTGC  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTCTGCAAACCAGGATGTAAAAGTCTCAGCTCC-ACCCCTGTCTATGTGC  949

seq1  CACCATGCTCCCAACCATGATGCTAATCCCCTTAGCATCTGAAACTCTCA  1000
      || ||||||||| |||||||||||||||||||||||||||| ||||||||
seq2  CA-CATGCTCCC-ACCATGATGCTAATCCCCTTAGCATCTG-AACTCTCA  996

seq1  GCAAGCACGCAAATGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT  1050
      |||||||||| |||||          |||||||| || |  |  | ||||
seq2  GCAAGCACGC-AATGC----------TTTTTTTTATTGTACTACTGTTTT  1035

seq1  TTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGTA  1100
      || |||| || |||| ||||| |||||||| ||||  |||||  ||||||
seq2  TTCTTTTATTATTGGGTTTTC-AGACAGGG-TTCTTCGTGTATGCCTGTA  1083

seq1  GCCCTGGAA  1109
      | |||||||
seq2  G-CCTGGAA  1091

seq1: chr13_64421858_64423060
seq2: B6Ng01-075P09.g_71_1266 (reverse)

seq1  CAGCAAAACATCCTCTCCTAAGACAGTTTCCTGGAAAACATCACGTGACA  50
      |||||||   |||| |||||||||| |||||| |||||| | ||||||||
seq2  CAGCAAACTTTCCT-TCCTAAGACA-TTTCCT-GAAAAC-TTACGTGACA  46

seq1  CAACCGAG-TCTCCAAACGAACAAAAGCCAGAGATTTCCACTTCAGATAT  99
          |||| || | ||||||  ||| || |||||||  |||||||||| |
seq2  ----CGAGTTCCCAAAACGACAAAAGGCAAGAGATT--CACTTCAGAT-T  89

seq1  CCTTTGTAT-GAATTTTCTGATGACCTTTGTGGG-ACTTCTTAACCCAAC  147
       |||||||| ||||||||  |||| ||||||||| ||||||||| |||||
seq2  TCTTTGTATGGAATTTTCGAATGA-CTTTGTGGGAACTTCTTAA-CCAAC  137

seq1  AACCTCCTGATAAA-GTTTGTGCATTCTGGCTGACATGTTCTTTTGTTTG  196
      || ||||||||||| |||||||||| |||||||||||||   |||| | |
seq2  AA-CTCCTGATAAAGGTTTGTGCATCCTGGCTGACATGT--CTTTGATGG  184

seq1  TTTGTTTTGTTTTTCG-AGGCAGGGTTTCTCTGT-ATAGCTTTGGCTGTT  244
      |||| |||| |||||| |||||||| |||||||| |||||||||||||||
seq2  TTTGGTTTGGTTTTCGAAGGCAGGGGTTCTCTGTAATAGCTTTGGCTGTT  234

seq1  CTGGAACTCACTTTGTAGACCAGGCTGGCCTCG-AACTCAGAAATCCACC  293
      ||||||||||||||||||||||||||||||||| |||||||||||||| |
seq2  CTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAAACTCAGAAATCCA-C  283

seq1  TGCCTCTGCCTCCCAAGTTCTGGGATT-AAAGGCGTGTGCCACCACGCCC  342
      ||| ||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGCTTCTGCCTCCCAAGTTCTGGGATTAAAAGGCGTGTGCCACCACGCCC  333

seq1  GGCTCTGGCTGACATA-TTCTTGACAGCAGTCTTCAGCCTCTTAGCAGAG  391
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGCTCTGGCTGACATATTTCTTGACAGCAGTCTTCAGCCTCTTAGCAGAG  383

seq1  AAGCATTTAAACTAACCACAGAGACAAACAGATCAAAACAATG-AAATAC  440
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAGCATTTAAACTAACCACAGAGACAAACAGATCAAAACAATGAAAATAC  433

seq1  AATAAAGGTTTGCTTTTGCTCACAAAATGTTCAACTACTAAAAATATGGA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGGTTTGCTTTTGCTCACAAAATGTTCAACTACTAAAAATATGGA  483

seq1  GAGTTTTACTCCCAATATTTATACAGGCACTTTTCCTTCTTATCATCTTT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTACTCCCAATATTTATACAGGCACTTTTCCTTCTTATCATCTTT  533

seq1  AAAAATGGCATTAATACATGGCATCCAAGGTTGACCTGGAAGCCAGATGC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGGCATTAATACATGGCATCCAAGGTTGACCTGGAAGCCAGATGC  583

seq1  ATTTTACTACTTTTCCATCTGTTTAGTATCGGGGAGGGGTAGAGTCGGAG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACTACTTTTCCATCTGTTTAGTATCGGGGAGGGGTAGAGTCGGAG  633

seq1  GTGTCGTCTGCTACAATTGTAGGTCAGGGGGCACCTCTCTCCTTCTACCT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCGTCTGCTACAATTGTAGGTCAGGGGGCACCTCTCTCCTTCTACCT  683

seq1  AGATTGAGGTAGAATTTCTATTGTTTCTTCCCCTGGTCATGTACTCAGGG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGAGGTAGAATTTCTATTGTTTCTTCCCCTGGTCATGTACTCAGGG  733

seq1  TAGCTGACCCTTTTAGCTGATTTCCCTTTATCCAGCTCCCATCTCACACA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGACCCTTTTAGCTGATTTCCCTTTATCCAGCTCCCATCTCACACA  783

seq1  CAGTAGGAATGCTGGGATGACAGATCCTTGCCACCATATCCTTCATCTAC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGGAATGCTGGGATGACAGATCCTTGCCACCATATCCTTCATCTAC  833

seq1  GTGGTTTCTGGAGATCTAACTCAAGCTATTAGGCTTCTGTGGCAAGTTCT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTCTGGAGATCTAACTCAAGCTATTAGGCTTCTGTGGCAAGTTCT  883

seq1  TTTTATCAGATACGCCTTCCCTGGGGTGCTCATACTTGTTCTATTCTGAA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCAGATACGCCTTCCCTGGGGTGCTCATACTTGTTCTATTCTGAA  933

seq1  GGGCCCTGTCATATCTCAGGGGAATCTTGTATTTGTCAGGCCTGGTTATG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCTGTCATATCTCAGGGGAATCTTGTATTTGTCAGGCCTGGTTATG  983

seq1  TCATAAATCGTAGGCACCCGGTTCTAGCAGTCAGTCACAGAGTGAGGCTT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAATCGTAGGCACCCGGTTCTAGCAGTCAGTCACAGAGTGAGGCTT  1033

seq1  ACATAAACTGGAGACTGGAAATTCTGGAGTTGCTATTGCTTGGAGGAAAA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAACTGGAGACTGGAAATTCTGGAGTTGCTATTGCTTGGAGGAAAA  1083

seq1  ATGAAATTATGACTTACGAACAGAATACCAGGCTGTGATTTGTGAGCCTT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTATGACTTACGAACAGAATACCAGGCTGTGATTTGTGAGCCTT  1133

seq1  ATCTAACAAGATACGGTTTCATATAAAAGGAGTTTTCATAGAGCCAGAAG  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAACAAGATACGGTTTCATATAAAAGGAGTTTTCATAGAGCCAGAAG  1183

seq1  CATCTGTGAATTC  1203
      |||||||||||||
seq2  CATCTGTGAATTC  1196