BAC Information

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BAC

Clone NameB6Ng01-077B01
Chromosome16 (Build37)13 (Build37)
Map Location 4,590,455 - 4,590,94151,666,891 - 51,668,007
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneOlfr161, Olfr162-ps1, Olfr163-ps1, LOC100042949, Mefv, EG620395, Zfp263, Olfr15, Zfp174, Zfp597, 1200013P24Rik, 1700037C18Rik, Cluap1, LOC664851, Nlrc3, Btbd12, Dnase1, Trap1, Crebbp, EG436332, Adcy9, EG620313, Srl, Tcfap4
Downstream geneGlis2, Magmas, Coro7, Vasn, Dnaja3, Nmral1, Hmox2, 5730403B10Rik, 4930562C15Rik, 1500031H01Rik, Mgrn1, Nudt16l1, Anks3, 4930451G09Rik, Sept12, EG432995, Rogdi, 3930401K13Rik, Ubn1, Ppl, Sec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077B01.bB6Ng01-077B01.g
ACCDH893137DH893138
length9141,095
definitionDH893137|Mus musculus domesticus DNA, BAC clone: B6Ng01-077B01, 5' end.DH893138|Mus musculus domesticus DNA, BAC clone: B6Ng01-077B01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(4,590,455 - 4,590,941)(51,666,891 - 51,668,007)
sequence
gaattcctctgcatcctgaggaaagaaggcacaccgtcagcttcccacat
gggcgaagcagctgcacagggcttcccctgactcacacctttctacaaga
tccgcaaaaattctcagaggtgattattacacaacatctttgaactggct
ggttttgtgtcaacttgacacagctggagttatcacagagaaaggagctt
cagttggggagatgcctccatgagatccaactgtaaggcattttctcaat
tagtgatcaagggggaaaggccccctgtgggtgggaccatctctgggctg
gtagtcttagttctataagagagcaggctgagcaagccaggggaagcaag
ccagtaagtaccatccctccatggcctctgcatcagctcctgcttcctga
cctgcttgagttccagtcctgacttcctttggtgatgaacagcagtgtgg
aagtgtaagctgaataaaccccttcctccccaacttgcttcttttttttt
tgtttgtttttttgtttttgtttttttgtttttcgagacagggtttctct
gtgtagccctgactgtcctgaaactcactttgtacaccaggctggcctcg
aactcagaaatcctcctgcctctgcctcccgagtgctgggattaaaggcg
tgcatcaccacgcccggcccccaacttgctttcttggtcatgatgttttg
tgtaggaatagaaaccctgactaagggctggtgagatggctcagtgggta
agagcacccgactgctcttctgaaggtccggagttcaaatcccagcaacc
cacatggtgggctcacaaccatctgtaacaagatctgactccctcttctg
gagtgtctgaatgacagcttacagtgtccttacttataataaataaatta
atcttttaaaaaaa
gaattccaaattgtctagatgagatataaaaagggtggtcagatatgggg
taggtggtacatgcttctgatcccagcatttgggcagttgaagcaggaca
tttgagggctctagtgggacagtctgggttacatggtgagatttcatctc
gaaaacaaacaaaacagccagaaattgtaggataagcataaatcccgagc
catctgaggaactgccctcaccaaccaggcacacctactgcaagtccagc
ttacatcctgttttgcataaaggaagccaagggtcactggggctacacaa
tgtgcagtgaccacatcttctatcttcatggccacacacaaccctgcctc
agagaggtaggtgtggtgtacagtgtccagtggggcttctcccttcgggc
agtgctcattcatcattaacgacaatgttgccagtggactgagagacaaa
aaggttcagactttctagaagatagaagatgggctatattacaaagagag
gctagggagatggccagtcagtgagatggctgacaatacacccagaaccc
acagaaaaagccaggcgcggtagtgtgtacctgaagtcctcatgctgaga
acaaagatcccagaagctccatagtcagtcctatccaaacaatgagctct
gctttcatgacagatgctgtctcaaaaattaaggtggagctcagggattg
agagcactggctgctttcccgggggaccacagttagattaccagcaccca
catggtggctcacaactgtctgggattctgactccagggaagttgatgcc
ctctttctggatccttccgcactagggctcacacatgccgtcgaaacatc
agtatccataaaacaaaaataagaaagggagagagtgataaagacatctt
cctgcagtcacacgcacgcacacacatgaaaacacacacaaacacatatg
catgccaaagcataaacacaatattagatgtatagagtatacgagtgagc
tatgtgtctacagtgtaaagaggaacagattgagcagtaggagcagacaa
ggagagaagatgaccactgaaccctcctggggaggatggagtgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_4590455_4590941
seq2: B6Ng01-077B01.b_580_961 (reverse)

seq1  TTTTTTTCTTAAAGATTAATTTATTTACCAAAAACAAACAAACAATACAA  50
        ||||| | |||||||||||||||||  | ||  ||  | ||  ||   
seq2  --TTTTTTTAAAAGATTAATTTATTTATTATAAGTAAGGACACTGTA---  45

seq1  GACAGATGGTGGTAGCGCATGCCCTTAATCTGGGGTCTCAG-AGTTGGAG  99
         || ||         ||| |    | ||        ||| ||  ||||
seq2  ---AGCTG--------TCATTCAGACACTC--------CAGAAGAGGGAG  76

seq1  GCCAGCCTGGTCTATAGAGCAAGTTAT-AGCACAGTCAAGGATACACAGA  148
       |    || ||   || ||   ||| | ||| |                 
seq2  TCAGATCTTGT---TACAGATGGTTGTGAGCCC-----------------  106

seq1  AAAACCCTGTCTCAAAAAATATATATATTCATTTTTTAAATGCATGAACG  198
         ||| |||                                       |
seq2  ---ACCATGT---------------------------------------G  114

seq1  TTTTGCTTACATGAATGTATATCACATGAATGCCCAGTGCCTGTGGAAGT  248
        |||||   ||              ||||  | | |  |||       |
seq2  GGTTGCTGGGAT-------------TTGAA--CTCCGGACCT-------T  142

seq1  CAGAAGGACA-TTGGATCCTCT--GCAACTGGAGTTA------CAGGTGT  289
      ||||||  || | || | ||||   | ||| |||  |      |||   |
seq2  CAGAAGAGCAGTCGGGTGCTCTTACCCACT-GAGCCATCTCACCAGCCCT  191

seq1  TTGTGAGCCATATGTGGGTGC--TGGGAACTGAACGCAGGTTCTCTTCAA  337
      | || ||        || | |  |    ||  ||  ||  |  |   |||
seq2  TAGTCAG--------GGTTTCTATTCCTACACAAAACA--TCATGACCAA  231

seq1  G--AGCGAGGAGTACGCCGGGCGGTGGTGGCACACGCCTTTAACCCCAGC  385
      |  ||| ||  |   ||||||| ||||||   ||||||||||| ||||||
seq2  GAAAGCAAGTTGGGGGCCGGGC-GTGGTGATGCACGCCTTTAATCCCAGC  280

seq1  ACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGTTC  435
      ||| ||||||||||||||||  ||||||||||||||||||||||||| | 
seq2  ACTCGGGAGGCAGAGGCAGGAGGATTTCTGAGTTCGAGGCCAGCCTGGTG  330

seq1  TACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTC  485
      |||| |||||||| |||||||| |||||||||||||||||||||||||||
seq2  TACAAAGTGAGTTTCAGGACAGTCAGGGCTACACAGAGAAACCCTGTCTC  380

seq1  GA  487
      ||
seq2  GA  382

seq1: chr13_51666891_51668007
seq2: B6Ng01-077B01.g_68_1162

seq1  GAATTCCAAATTGTCTAGATGAGATATAAAAAGGGTGGTCAGATATGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATTGTCTAGATGAGATATAAAAAGGGTGGTCAGATATGGGG  50

seq1  TAGGTGGTACATGCTTCTGATCCCAGCATTTGGGCAGTTGAAGCAGGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGGTACATGCTTCTGATCCCAGCATTTGGGCAGTTGAAGCAGGACA  100

seq1  TTTGAGGGCTCTAGTGGGACAGTCTGGGTTACATGGTGAGATTTCATCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGGCTCTAGTGGGACAGTCTGGGTTACATGGTGAGATTTCATCTC  150

seq1  GAAAACAAACAAAACAGCCAGAAATTGTAGGATAAGCATAAATCCCGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAAACAAAACAGCCAGAAATTGTAGGATAAGCATAAATCCCGAGC  200

seq1  CATCTGAGGAACTGCCCTCACCAACCAGGCACACCTACTGCAAGTCCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGAGGAACTGCCCTCACCAACCAGGCACACCTACTGCAAGTCCAGC  250

seq1  TTACATCCTGTTTTGCATAAAGGAAGCCAAGGGTCACTGGGGCTACACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCCTGTTTTGCATAAAGGAAGCCAAGGGTCACTGGGGCTACACAA  300

seq1  TGTGCAGTGACCACATCTTCTATCTTCATGGCCACACACAACCCTGCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGTGACCACATCTTCTATCTTCATGGCCACACACAACCCTGCCTC  350

seq1  AGAGAGGTAGGTGTGGTGTACAGTGTCCAGTGGGGCTTCTCCCTTCGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGTAGGTGTGGTGTACAGTGTCCAGTGGGGCTTCTCCCTTCGGGC  400

seq1  AGTGCTCATTCATCATTAACGACAATGTTGCCAGTGGACTGAGAGACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCATTCATCATTAACGACAATGTTGCCAGTGGACTGAGAGACAAA  450

seq1  AAGGTTCAGACTTTCTAGAAGATAGAAGATGGGCTATATTACAAAGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCAGACTTTCTAGAAGATAGAAGATGGGCTATATTACAAAGAGAG  500

seq1  GCTAGGGAGATGGCCAGTCAGTGAGATGGCTGACAATACACCCAGAACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGGAGATGGCCAGTCAGTGAGATGGCTGACAATACACCCAGAACCC  550

seq1  ACAGAAAAAGCCAGGCGCGGTAGTGTGTACCTGAAGTCCTCATGCTGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAAAGCCAGGCGCGGTAGTGTGTACCTGAAGTCCTCATGCTGAGA  600

seq1  ACAAAGATCCCAGAAGCTCCATAGTCAGTCCTATCCAAACAATGAGCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGATCCCAGAAGCTCCATAGTCAGTCCTATCCAAACAATGAGCTCT  650

seq1  GCTTTCATGACAGATGCTGTCTCAAAAATTAAGGTGGAGCTCAGGGATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCATGACAGATGCTGTCTCAAAAATTAAGGTGGAGCTCAGGGATTG  700

seq1  AGAGCACTGGCTGCTTTCCCGGGGGACCACAGTTAGATTACCAGCACCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACTGGCTGCTTTCCCGGGGGACCACAGTTAGATTACCAGCACCCA  750

seq1  CATGGTGGCTCACAACTGTCTGGGATTCTGACTCCAGGGAAGTTGATGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGGCTCACAACTGTCTGGGATTCTGACTCCAGGGAAGTTGATGCC  800

seq1  CTC-TTCTGGATCCTTCCGCACTAGGGCTCACACATGCCGTCGAAACATC  849
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTGGATCCTTCCGCACTAGGGCTCACACATGCCGTCGAAACATC  850

seq1  AGTATCCATAAAACAAAAATAAGAAAGGGAGAGAGTGATAAAGACATCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCCATAAAACAAAAATAAGAAAGGGAGAGAGTGATAAAGACATCTT  900

seq1  CCTGCAGTCACACGCACGCACACACATGAAAACACACACAAACACATATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGTCACACGCACGCACACACATGAAAACACACACAAACACATATG  950

seq1  CATGCCAAAAGCATAAACACAAATATTAAGATGTAATAGAGTATAACGGA  999
      |||||| ||||||||||||| |||||| |||||| ||||||||| |||  
seq2  CATGCC-AAAGCATAAACAC-AATATT-AGATGT-ATAGAGTAT-ACG--  993

seq1  GGTGAAGCTATTGTGTCTTACAGTGTAAAAGAGGAGACCAGAATGGAAGC  1049
       ||| ||||| |||||| |||||||| ||||||  || |||| ||  |||
seq2  AGTG-AGCTA-TGTGTC-TACAGTGT-AAAGAG--GAACAGATTG--AGC  1035

seq1  AAGTAGGGAGCAGGGACAAGGGAGAGAGAGTGGACCAACTGACCCTCCCT  1099
       |||| ||||||  ||||| ||||||| ||  |||| ||||| ||  |||
seq2  -AGTA-GGAGCA--GACAA-GGAGAGA-AGATGACC-ACTGAACCCTCCT  1078

seq1  GGGGAGGATGGAAGTGAT  1117
      ||||||||||| ||||||
seq2  GGGGAGGATGG-AGTGAT  1095