BAC Information

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BAC

Clone NameB6Ng01-077E06
Chromosome13 (Build37)17 (Build37)
Map Location 55,306,455 - 55,307,53451,154,371 - 51,154,441
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneHrh2, LOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4
Downstream geneNsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1, H2afy, BC027057
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077E06.bB6Ng01-077E06.g
ACCDH893289DH893290
length1,063126
definitionDH893289|Mus musculus domesticus DNA, BAC clone: B6Ng01-077E06, 5' end.DH893290|Mus musculus domesticus DNA, BAC clone: B6Ng01-077E06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(55,306,455 - 55,307,534)(51,154,371 - 51,154,441)
sequence
gaattctttcccagatcttagaatgtttccatttctatgaattgtccaaa
acagacaagtctatagagacaaagattagcttggtagatgccacgtgccg
gaggaagggaaagagtgaggattgaaattataatattacgtcatttctcg
tttccctttcctccctccaaaccctcctgtataccctccttgatctctgt
caagctcatctctgttgacttagctgttgttacatgcatatctatgtata
ggcatgtgtatttctgactataaccagctcggtctgcacaatgtcactcc
tgtgtatgttttcagggctgactactgggcattggataaccaactggtgt
ccctcccagtctcagcagtccttggctgcctgtggttctttgtgtagtgt
tggggcctcctgggctttcttcttccactgctggctttttctattgttgt
tgatgttttgagacagggtttctctgtgtagccctggctgtcctgaaaac
tcactttgtatactaggctgaccttgaactcagaagttcacctgcctctg
cctggaaagaaaggctgacattaaaggcatgcaccactaccacctggctt
cctgaccttctcagcaaaaaaaaacaccactccacctcttacagggctgg
cctcctgcaggctgcttctttgcctctgctttcctttctttttctttctt
tctttctttctttttttttttttttttttgagacagggtttttctgtgta
gctctggctgtcctagaactctgtagaccaggctggccttgaactcagaa
atctacctgcctctgcctcccaagtgctgggattaaaggcgtgggccacc
acgcccggctggctctgctttcctttcttgtgaaggagacagatggtggt
tgggtgagttgtaaatcaacttcttctacagactaaaggacaaccctatc
ctagctctggctgggtgtgggactctgcctttgttgagcctgcccaggct
gctcaacctggcatctcccaccgcacccatggaatcagttagagatgcac
tccacaaattttt
cagttaaacagagaaaccctgtctcaaaaacaacaagaacaaaaaagaaa
gaaagaaaggaaggaagggagggaagaaagaaaaaggaaaggaaaggaaa
ggaaaggaaaggaaaggggaaaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_55306455_55307534
seq2: B6Ng01-077E06.b_43_1105

seq1  GAATTCTTTCCCAGATCTTAGAATGTTTCCATTTCTATGAATTGTCCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCCAGATCTTAGAATGTTTCCATTTCTATGAATTGTCCAAA  50

seq1  ACAGACAAGTCTATAGAGACAAAGATTAGCTTGGTAGATGCCACGTGCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAAGTCTATAGAGACAAAGATTAGCTTGGTAGATGCCACGTGCCG  100

seq1  GAGGAAGGGAAAGAGTGAGGATTGAAATTATAATATTACGTCATTTCTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGGGAAAGAGTGAGGATTGAAATTATAATATTACGTCATTTCTCG  150

seq1  TTTCCCTTTCCTCCCTCCAAACCCTCCTGTATACCCTCCTTGATCTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTTCCTCCCTCCAAACCCTCCTGTATACCCTCCTTGATCTCTGT  200

seq1  CAAGCTCATCTCTGTTGACTTAGCTGTTGTTACATGCATATCTATGTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTCATCTCTGTTGACTTAGCTGTTGTTACATGCATATCTATGTATA  250

seq1  GGCATGTGTATTTCTGACTATAACCAGCTCGGTCTGCACAATGTCACTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTGTATTTCTGACTATAACCAGCTCGGTCTGCACAATGTCACTCC  300

seq1  TGTGTATGTTTTCAGGGCTGACTACTGGGCATTGGATAACCAACTGGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGTTTTCAGGGCTGACTACTGGGCATTGGATAACCAACTGGTGT  350

seq1  CCCTCCCAGTCTCAGCAGTCCTTGGCTGCCTGTGGTTCTTTGTGTAGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCAGTCTCAGCAGTCCTTGGCTGCCTGTGGTTCTTTGTGTAGTGT  400

seq1  TGGGGCCTCCTGGGCTTTCTTCTTCCACTGCTGGCTTTTTCTATTGTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCCTCCTGGGCTTTCTTCTTCCACTGCTGGCTTTTTCTATTGTTGT  450

seq1  TGATGTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGAAAAC  500

seq1  TCACTTTGTATACTAGGCTGACCTTGAACTCAGAAGTTCACCTGCCTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTGTATACTAGGCTGACCTTGAACTCAGAAGTTCACCTGCCTCTG  550

seq1  CCTGGAAAGAAAGGCTGACATTAAAGGCATGCACCACTACCACCTGGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAAGAAAGGCTGACATTAAAGGCATGCACCACTACCACCTGGCTT  600

seq1  CCTGACCTTCTCAGCAAAAAAAAACACCACTCCACCTCTTACAGGGCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCTTCTCAGCAAAAAAAAACACCACTCCACCTCTTACAGGGCTGG  650

seq1  CCTCCTGCAGGCTGCTTCTTTGCCTCTGCTTTCCTTTCTTTTTCTTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGCAGGCTGCTTCTTTGCCTCTGCTTTCCTTTCTTTTTCTTTCTT  700

seq1  TCTTTCTTTCTTTTTTTTTTTTTTTTTTTGAGACAGGGTTTTTCTGTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTTTTTTTTTTTTTTTTTGAGACAGGGTTTTTCTGTGTA  750

seq1  GCTCTGGCTGTCCTAGAACTCTGTAGACCAGGCTGGCCTTGAACTCAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGCTGTCCTAGAACTCTGTAGACCAGGCTGGCCTTGAACTCAGAA  800

seq1  ATCTACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGGGCCACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGGGCCACC  850

seq1  ACGCCCGGCTGGCTCTGCTTTCCTTTCTTGTTGAAGGGAGACAGATGGTG  900
      |||||||||||||||||||||||||||||| |||| ||||||||||||||
seq2  ACGCCCGGCTGGCTCTGCTTTCCTTTCTTG-TGAA-GGAGACAGATGGTG  898

seq1  GTTGGGTGAGTTGTAAAATCAAC-TCTTCTACAGACTAAAGGGACAACCC  949
      |||||||||||||| |||||||| |||||||||||||||| |||||||||
seq2  GTTGGGTGAGTTGT-AAATCAACTTCTTCTACAGACTAAA-GGACAACCC  946

seq1  TATCCTAGCTCTTGGCTGGGTGTTGTGGACTTCTGCCTTTGTCTGAGCCT  999
      ||||||||||| |||||||||||   |||| ||||||||||| |||||||
seq2  TATCCTAGCTC-TGGCTGGGTGT--GGGAC-TCTGCCTTTGT-TGAGCCT  991

seq1  GTCCCCCAGGCTGCTCAAACCTGGCATTCTCCCACCGCCACCCAATGGAA  1049
      |   |||||||||||| ||||||||| |||||||||| ||||| ||||||
seq2  G---CCCAGGCTGCTC-AACCTGGCA-TCTCCCACCG-CACCC-ATGGAA  1034

seq1  TCAGGTTAGAGATGCATCCAACAAATATTTT  1080
      ||| ||||||||||||  | |||||| ||| 
seq2  TCA-GTTAGAGATGCACTCCACAAATTTTT-  1063

seq1: chr17_51154371_51154441
seq2: B6Ng01-077E06.g_120_199

seq1  --------GAAAGGAAAGGAA---AGGAAAGGAAAGGAAAGGAAAGGAAA  39
              |||||| ||||||   ||| ||| ||   |||||||||||||
seq2  GAAAGAAAGAAAGG-AAGGAAGGGAGGGAAGAAAGAAAAAGGAAAGGAAA  49

seq1  GGAAAGGAAAGGAAAGGAAAGGGGAATAGGAA  71
      |||||||||||||||||||||||||| |||||
seq2  GGAAAGGAAAGGAAAGGAAAGGGGAA-AGGAA  80