BAC Information

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BAC

Clone NameB6Ng01-077F09
Chromosome13 (Build37)
Map Location 100,101,700 - 100,283,954
singlet/doubletdoublet
Overlap genePtcd2, Mrps27, Mtap1b
Upstream geneFoxd1, LOC100039827, LOC100039665, LOC100039854, LOC218501, Tmem174, Tmem171, LOC669675, Fcho2, Tnpo1, EG432798, LOC100039771, 1700024P04Rik, LOC100039967, LOC100039797, Zfp366
Downstream geneCartpt, Mccc2, Bdp1, Serf1, Smn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838, Naip1, Gtf2h2, Ocln
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077F09.bB6Ng01-077F09.g
ACCDH893340DH893341
length9251,044
definitionDH893340|Mus musculus domesticus DNA, BAC clone: B6Ng01-077F09, 5' end.DH893341|Mus musculus domesticus DNA, BAC clone: B6Ng01-077F09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,283,027 - 100,283,954)(100,101,700 - 100,102,745)
sequence
gaattctgtgcgttatgtcctggctttactagcatttagtcctaaatcca
gatttgtcttcttaacagcagaaagtaggaaagaaagggaaagaaggagg
gaaggaggaaaggaagaaaggaaggaaggaagaatatttgagagagagag
agggaaaagcacaaaccgcagagaacagttcactgaattttcacaaagtg
aagacacctgtgttgtccagctaagaaacagccatttacaagaatctcag
aagtcaccccacccaccaatcctaatgttcattttgcaatcaccatgctt
tttttgatttttaattccctaatttggtcaggttttttttctttctttcc
tttttttttttttttttttttttttttttttggaataaatttctgaaatg
gttgtatcgatctcattaaaaatcaaccaagtgtgtgagcagagccattt
cctccaggggagtaacaaatgttgctgattctctaaagagtgctctcctg
ggtccccgggtctcccgatgcagctcacactgcccgggttttcaaggata
agtgaaaactctgcttccccggcttttcaaacagtctgagatgacttaac
aacagggcagtcaggctctgtttccttggcggggcgcactgctgcttcag
ctggcagatcccagctgggcctcctccagaggtcactatggtgccactgc
tattgttgcctgcaggctatgttgcttgaggcaagaagaagctgctccat
ggggctcaagctcggctggtcagctccctgagggctggggaaaccatttc
tctcagctgttagcctttcttattccctcttcctttcccatccagactga
ggcactatgtagctggagaccctggagtctggcatattggcatctgatga
ttacccagagcactccagaaaggca
gaattctctgtagttcacacacccagggaagcctgcctgggcagggtcct
acctgggagtcaccgtttggaatgacccatggtagtgctgtatgactggg
aaggatgacctcatcctgagggcagtaaactagccttcagacctatagct
aagaatggcttaaagatttacaaaggcttagcagaacaaatcgagactac
gtggtagcagggcttaggagatggctaagtggttaagagcactgactggt
agaggataggggttaactcccagcactcacatcatggttcataaccacct
gcaagtttagtttcggaaggtcagataccctcttctgacttccacaggca
ccaggcatgcatgcagtgcacagataggcacttgtgtgaaacgcccatac
atagaaagaacacatgacggcaatcacatgtagagctcaccccagaagga
tgggatgatttccagaggggagcagggcctgatctagaatagtctaaccg
agcagagattctggagcccagcagggacttgtctcttgttttcaagatct
aatttaaaattgaagtatttgtgccagatggaaagtagattttaaaggaa
ccagagaaagaaaggggggagggggagaataaattcactctcagatcctc
ctcaatgcccagcgcccagagggtttggggaaacgctcttaccagtttgt
agcagattgcaaaagcgaggatgtaggtttctttgctgaacctcacatct
tggtttttcatttcgatcaacacttgaagtgcacctgcaatgaaggaaag
agcggccagcagttaaaagcacctcctggcagtggccaaattctaatcag
tcagcaccacctaccagagagcagatttttaacatgatgaaagcccttcc
tcaagttcaaatagcacgagccagatcaggtaggaagaacgcacagaaac
ttgctaagtttccgataatctgggggtggttctcgtcagccaccactcca
cgagagatgttttcaactccaggagtgaggtccctcgggggctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_100283027_100283954
seq2: B6Ng01-077F09.b_46_970 (reverse)

seq1  TGCCTTTCTGGAGTGCTCTTGGGTAATCAATCAGATGGCCAATATGCCAG  50
      |||||||||||||||||| ||||||||| ||||||| |||||||||||||
seq2  TGCCTTTCTGGAGTGCTC-TGGGTAATC-ATCAGAT-GCCAATATGCCAG  47

seq1  ACTCCAGGGTCTCCAGCTACATAGTGCCTCAGTCTGGATGGGAAAGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGGGTCTCCAGCTACATAGTGCCTCAGTCTGGATGGGAAAGGAAG  97

seq1  AGGGAATAAGAAAGGCTAACAGCTGAGAGAAATGGTTTCCCCAGCCCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATAAGAAAGGCTAACAGCTGAGAGAAATGGTTTCCCCAGCCCTCA  147

seq1  GGGAGCTGACCAGCCGAGCTTGAGCCCCATGGAGCAGCTTCTTCTTGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCTGACCAGCCGAGCTTGAGCCCCATGGAGCAGCTTCTTCTTGCCT  197

seq1  CAAGCAACATAGCCTGCAGGCAACAATAGCAGTGGCACCATAGTGACCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAACATAGCCTGCAGGCAACAATAGCAGTGGCACCATAGTGACCTC  247

seq1  TGGAGGAGGCCCAGCTGGGATCTGCCAGCTGAAGCAGCAGTGCGCCCCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAGGCCCAGCTGGGATCTGCCAGCTGAAGCAGCAGTGCGCCCCGC  297

seq1  CAAGGAAACAGAGCCTGACTGCCCTGTTGCTAAGTCATCTCAGACTGTTT  350
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAAGGAAACAGAGCCTGACTGCCCTGTTGTTAAGTCATCTCAGACTGTTT  347

seq1  GAAAAGCCGGGGAAGCAGAGTTTTCACTTATCCTTGAAAACCCGGGCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCCGGGGAAGCAGAGTTTTCACTTATCCTTGAAAACCCGGGCAGT  397

seq1  GTGAGCTGCATCGGGAGACCCGGGGACCCAGGAGAGCACTCTCTAGAGGA  450
      |||||||||||||||||||||||||||||||||||||||||| ||||| |
seq2  GTGAGCTGCATCGGGAGACCCGGGGACCCAGGAGAGCACTCTTTAGAGAA  447

seq1  TCAGCAACATCTGTTACTACCCTGGAGGAAATGGCTCTGCTCACACACTT  500
      |||||||||| ||||||| |||||||||||||||||||||||||||||||
seq2  TCAGCAACATTTGTTACTCCCCTGGAGGAAATGGCTCTGCTCACACACTT  497

seq1  GGTTGATTCTTAATGAGATCGATACAACCATTTCAGAAATCTATTCCAAA  550
      |||||||| ||||||||||||||||||||||||||||||| |||||||||
seq2  GGTTGATTTTTAATGAGATCGATACAACCATTTCAGAAATTTATTCCAAA  547

seq1  AAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAGAAAGAAAAAAAACCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAGAAAGAAAAAAAACCTG  597

seq1  ACCAAATTAGGGAATTAAAAATCAAAAAAAGCATGGTGATTGCAAAATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATTAGGGAATTAAAAATCAAAAAAAGCATGGTGATTGCAAAATGA  647

seq1  ACATTAGGATTGGTGGGTGGGGTGACTTCTGAGATTCTTGTAAATGGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGGATTGGTGGGTGGGGTGACTTCTGAGATTCTTGTAAATGGCTG  697

seq1  TTTCTTAGCTGGACAACACAGGTGTCTTCACTTTGTGAAAATTCAGTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAGCTGGACAACACAGGTGTCTTCACTTTGTGAAAATTCAGTGAA  747

seq1  CTGTTCTCTGCGGTTTGTGCTTTTCCCTCTCTCTCTCTCAAATATTCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTCTGCGGTTTGTGCTTTTCCCTCTCTCTCTCTCAAATATTCTTC  797

seq1  CTTCCTTCCTTTCTTCCTTTCCTCCTTCCCTCCTTCTTTCCCTTTCTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCCTTTCTTCCTTTCCTCCTTCCCTCCTTCTTTCCCTTTCTTTC  847

seq1  CTACTTTCTGCTGTTAAGAAGACAAATCTGGATTTAGGACTAAATGCTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTCTGCTGTTAAGAAGACAAATCTGGATTTAGGACTAAATGCTAG  897

seq1  TAAAGCCAGGACATAACGCACAGAATTC  928
      ||||||||||||||||||||||||||||
seq2  TAAAGCCAGGACATAACGCACAGAATTC  925

seq1: chr13_100101700_100102745
seq2: B6Ng01-077F09.g_69_1112

seq1  GAATTCTCTGTAGTTCACACACCCAGGGAAGCCTGCCTGGGCAGGGTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTAGTTCACACACCCAGGGAAGCCTGCCTGGGCAGGGTCCT  50

seq1  ACCTGGGAGTCACCGTTTGGAATGACCCATGGTAGTGCTGTATGACTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGAGTCACCGTTTGGAATGACCCATGGTAGTGCTGTATGACTGGG  100

seq1  AAGGATGACCTCATCCTGAGGGCAGTAAACTAGCCTTCAGACCTATAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGACCTCATCCTGAGGGCAGTAAACTAGCCTTCAGACCTATAGCT  150

seq1  AAGAATGGCTTAAAGATTTACAAAGGCTTAGCAGAACAAATCGAGACTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGGCTTAAAGATTTACAAAGGCTTAGCAGAACAAATCGAGACTAC  200

seq1  GTGGTAGCAGGGCTTAGGAGATGGCTAAGTGGTTAAGAGCACTGACTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGCAGGGCTTAGGAGATGGCTAAGTGGTTAAGAGCACTGACTGGT  250

seq1  AGAGGATAGGGGTTAACTCCCAGCACTCACATCATGGTTCATAACCACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATAGGGGTTAACTCCCAGCACTCACATCATGGTTCATAACCACCT  300

seq1  GCAAGTTTAGTTTCGGAAGGTCAGATACCCTCTTCTGACTTCCACAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTTAGTTTCGGAAGGTCAGATACCCTCTTCTGACTTCCACAGGCA  350

seq1  CCAGGCATGCATGCAGTGCACAGATAGGCACTTGTGTGAAACGCCCATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCATGCATGCAGTGCACAGATAGGCACTTGTGTGAAACGCCCATAC  400

seq1  ATAGAAAGAACACATGACGGCAATCACATGTAGAGCTCACCCCAGAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAGAACACATGACGGCAATCACATGTAGAGCTCACCCCAGAAGGA  450

seq1  TGGGATGATTTCCAGAGGGGAGCAGGGCCTGATCTAGAATAGTCTAACCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGATTTCCAGAGGGGAGCAGGGCCTGATCTAGAATAGTCTAACCG  500

seq1  AGCAGAGATTCTGGAGCCCAGCAGGGACTTGTCTCTTGTTTTCAAGATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGATTCTGGAGCCCAGCAGGGACTTGTCTCTTGTTTTCAAGATCT  550

seq1  AATTTAAAATTGAAGTATTTGTGCCAGATGGAAAGTAGATTTTAAAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAATTGAAGTATTTGTGCCAGATGGAAAGTAGATTTTAAAGGAA  600

seq1  CCAGAGAAAGAAAGGGGGGAGGGGGAGAATAAATTCACTCTCAGATCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAAAGAAAGGGGGGAGGGGGAGAATAAATTCACTCTCAGATCCTC  650

seq1  CTCAATGCCCAGCGCCCAGAGGG-TTAGGGAAACGCTCTTACCAGTTTGT  699
      ||||||||||||||||||||||| || |||||||||||||||||||||||
seq2  CTCAATGCCCAGCGCCCAGAGGGTTTGGGGAAACGCTCTTACCAGTTTGT  700

seq1  AGCAGATTGCAAAAGCGAGGATGTAGGTTTCTTTGCTGAACCTCACATCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATTGCAAAAGCGAGGATGTAGGTTTCTTTGCTGAACCTCACATCT  750

seq1  TGGTTTTTCATTTCGATCAACACTTGAAGTGCACCTGCAATGAAGGAAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTTCATTTCGATCAACACTTGAAGTGCACCTGCAATGAAGGAAAG  800

seq1  AGCGGCCAGCAGTTAAAAGCACCTCCTGGCAGTGGCCAAAATTCTAATCA  849
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGCGGCCAGCAGTTAAAAGCACCTCCTGGCAGTGGCC-AAATTCTAATCA  849

seq1  GTTCAGCACCACCTACCAGAGAGCAGA-TTTTAACATGATGAAAGCCCTT  898
      | ||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  G-TCAGCACCACCTACCAGAGAGCAGATTTTTAACATGATGAAAGCCCTT  898

seq1  CCTCAAAGTCAAATAGCACGGAGCCAGATCAGGTAGGAAGAACGCACAGA  948
      ||||||  ||||||||||| ||||||||||||||||||||||||||||||
seq2  CCTCAAGTTCAAATAGCAC-GAGCCAGATCAGGTAGGAAGAACGCACAGA  947

seq1  AACTTGCTAAGGTTTCAGATAATCT-GGGGTGGTTCTCGTCAGCCACCAC  997
      |||||||||| ||||| |||||||| ||||||||||||||||||||||||
seq2  AACTTGCTAA-GTTTCCGATAATCTGGGGGTGGTTCTCGTCAGCCACCAC  996

seq1  ACACAGAGAGATGTTTTCAAACTTCAGGAGTGAGGTCACACTGGGGCTC  1046
       |   ||||||||||||| |||| ||||||||||||| | | |||||||
seq2  TCCACGAGAGATGTTTTC-AACTCCAGGAGTGAGGTCCCTCGGGGGCTC  1044