BAC Information

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BAC

Clone NameB6Ng01-077G15
Chromosome13 (Build37)
Map Location 75,878,938 - 76,010,935
singlet/doubletdoublet
Overlap geneEll2, LOC666786, Glrx, Rhobtb3
Upstream geneCast, LOC622204, EG544954, Pcsk1, LOC672443, LOC666764, LOC100042606, LOC100042986
Downstream geneLOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276, Mctp1, LOC666603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077G15.bB6Ng01-077G15.g
ACCDH893396DH893397
length1,1341,063
definitionDH893396|Mus musculus domesticus DNA, BAC clone: B6Ng01-077G15, 5' end.DH893397|Mus musculus domesticus DNA, BAC clone: B6Ng01-077G15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,009,792 - 76,010,935)(75,878,938 - 75,880,013)
sequence
gaattcactgtgtagaccaggctggcctagatccatctgcctcttcctga
aagtgctgggattaaaggcgtgcaccaccacacccagtttggagttcttt
ctttaaaaggctacctcaatcttttttgcctcctcaggaaaccaagacaa
ctgatttccctgagtaagcagcttgtttactgtcatttagatcctgtaat
caggatcttgctaatccacatgctggcgaagttaaagagcaggtggagaa
atcagactgactaagcaaaatgaaatccaagtgcaaacggaagggaggga
tccccaaacccttacatgtttaaagtgccaggtgtgcagaaggcaggacg
aagcttagggccttaacagtggaattcacgagtgttgactttggtagaag
tcgctccagtcaatggaggcgacctttacaggacatgggaagctagagaa
gtcgaatctagtcacagatttgacgactctaatggagctaagcttgagct
gagggccttagctgaaaccctggttcctattaaagtgggtgcagagtgta
cagcctaaggggaggctggaggagcaagctggaagttacagtgttgctaa
ctggaacacagaaagtaacaccaagttatggtgcgccagactctggagca
caggaagtaacaagaatgagtagattaactggtggctgtgactggatggg
aactaaagtctgggagacttttatagagtgtgaatggtagagttatccac
aaagaaaaggtaaatttgttatctagagtaaaagcagaagttttattaaa
aaagaaaaggataacagtcaaatgctacttggtggacgagtatatgtcaa
tataaattgtgtaatagcataagtcctgatggccttttaccgatattcta
ttaagtgattatggaggctatgggaaggacttggaatataagagttctga
gctccctctattgttggtattttatcttgtcagaaaataaagtacatgca
ctaattttttctccttaaacttaatggaagaacgagttttgttgaaaagc
acagatgtcttcaaacatgtacttgagcagctggcgaatacggagtatat
cccctcccggaatgtcctgtttagtcatgtgacc
gaattctaatgcttagatgcttacagcaagtttctcctagacctaagctt
agtgcacagtctgcacactgcacactgcacactgcagagctgagtggtaa
gaagaccagacagatgatactgagagacatgctggcttgctgagcttctg
cagaggtcgaagagaaagaaagacttttattttaggtcatacgaattgga
aaatgactttttggttcaaaagatctacagccaagagagtcgttttgttt
aacctggcatttcccaaacttacttgatggtagaatccccattttaaata
aaacttttcagcatactttggaaatactgttggaaagaaagcagacacca
gttctagttctgcctgagacattaatcaacatttttactcactcagcgaa
tacatatcgagtgactactttgtgctctgcaccattcaagatactggcag
tacattcacaagcgcacaaaggcgtctgtctttgcacagcttatattcta
gagggggaagaaataccataaacataatatgttagtattacaaggtaatg
agtgtttcagacagccatggagcagagaaagtggtctgagagtatagggt
agcaattttaagcatgaatataaccttggacagcttactgggcctctttg
tctctaatttataaaacgaagaatttgaaaaatgatctgggctcccctgg
tcctgtggttcaactgaacaaccccaagaacgtccatatcaaacttcgtt
tactgctggctcataaatgtctgattaaagccttttcagtcactgtagga
gaaaaattaggtattaatgcttataattaccgcactgccatttaagtctt
ttgtgatcgccacaagcaaacatttaaataaataaagcctttactagatt
cttttaatctagcatatgctttgatcctatatggggctcagtacaaacac
tttaagcagataccagtgtgcatgagtttcagcgggatgctgtacttctg
ccctgatcctagaagccggcctggtgactgagatgaaaggactttagaac
gtactttattgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_76009792_76010935
seq2: B6Ng01-077G15.b_49_1182 (reverse)

seq1  GGTCACATGACTAAACAGCGACATTTCCGGGAGTGGATATACTTCCTGTA  50
      |||||||||||||||||| |||| ||||||||| |||||||||  | |||
seq2  GGTCACATGACTAAACAG-GACA-TTCCGGGAGGGGATATACT--CCGTA  46

seq1  TTCTGCCAGCTGCTTCAAGTACATGTTTGATGGCCATCTGTGCTTTTCAA  100
      ||| ||||||||| ||||||||||||||||  | ||||||||||||||||
seq2  TTC-GCCAGCTGC-TCAAGTACATGTTTGA-AGACATCTGTGCTTTTCAA  93

seq1  CAAAACTTCGTTCTTCCACTAAAGTTTTAAGAGAAAAAAATTAATTGCAT  150
      |||||| ||||||||||| | |||||| | |||||||||  | | |||||
seq2  CAAAAC-TCGTTCTTCCA-TTAAGTTTAAGGAGAAAAAA--TTAGTGCAT  139

seq1  GTACTTTATTTCTTGACAAGATAAAATACCAACAATTAGA-GGAGCTCAG  199
      |||||||||||  |||||||||||||||||||||| |||| |||||||||
seq2  GTACTTTATTTTCTGACAAGATAAAATACCAACAA-TAGAGGGAGCTCAG  188

seq1  -ACTCTTATATTCCAAGTCCTTCCCATAGCCTTCCATAATCACTTAATAG  248
       |||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AACTCTTATATTCCAAGTCCTTCCCATAGCC-TCCATAATCACTTAATAG  237

seq1  AATATCGGTAAAAGGCCATCAGGACTTATGCTATTACACAATTTATATTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCGGTAAAAGGCCATCAGGACTTATGCTATTACACAATTTATATTG  287

seq1  ACATATACTCGTCCACCAAGTAGCATTTGACTGTTATCCTTTTCTTTTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATACTCGTCCACCAAGTAGCATTTGACTGTTATCCTTTTCTTTTTT  337

seq1  AATAAAACTTCTGCTTTTACTCTAGATAACAAATTTACCTTTTCTTTGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACTTCTGCTTTTACTCTAGATAACAAATTTACCTTTTCTTTGTG  387

seq1  GATAACTCTACCATTCACACTCTAT-AAAGTCTCCCAGACTTTAGTTCCC  447
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GATAACTCTACCATTCACACTCTATAAAAGTCTCCCAGACTTTAGTTCCC  437

seq1  ATCCAGTCACAGCCACCAGTTAATCTACTCATTCTTGTTACTTCCTGTGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTCACAGCCACCAGTTAATCTACTCATTCTTGTTACTTCCTGTGC  487

seq1  TCCAGAGTCTGGCGCACCATAACTTGGTGTTACTTTCTGTGTTCCAGTTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGTCTGGCGCACCATAACTTGGTGTTACTTTCTGTGTTCCAGTTA  537

seq1  GCAACACTGTAACTTCCAGCTTGCTCCTCCAGCCTCCCCTTAGGCTGTAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACACTGTAACTTCCAGCTTGCTCCTCCAGCCTCCCCTTAGGCTGTAC  587

seq1  ACTCTGCACCCACTTTAATAGGAACCAGGGTTTCAGCTAAGGCCCTCAGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCACCCACTTTAATAGGAACCAGGGTTTCAGCTAAGGCCCTCAGC  637

seq1  TCAAGCTTAGCTCCATTAGAGTCGTCAAATCTGTGACTAGATTCGACTTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCTTAGCTCCATTAGAGTCGTCAAATCTGTGACTAGATTCGACTTC  687

seq1  TCTAGCTTCCCATGTCCTGTAAAGGTCGCCTCCATTGACTGGAGCGACTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTTCCCATGTCCTGTAAAGGTCGCCTCCATTGACTGGAGCGACTT  737

seq1  CTACCAAAGTCAACACTCGTGAATTCCACTGTTAAGGCCCTAAGCTTCGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAAAGTCAACACTCGTGAATTCCACTGTTAAGGCCCTAAGCTTCGT  787

seq1  CCTGCCTTCTGCACACCTGGCACTTTAAACATGTAAGGGTTTGGGGATCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTTCTGCACACCTGGCACTTTAAACATGTAAGGGTTTGGGGATCC  837

seq1  CTCCCTTCCGTTTGCACTTGGATTTCATTTTGCTTAGTCAGTCTGATTTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTCCGTTTGCACTTGGATTTCATTTTGCTTAGTCAGTCTGATTTC  887

seq1  TCCACCTGCTCTTTAACTTCGCCAGCATGTGGATTAGCAAGATCCTGATT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTGCTCTTTAACTTCGCCAGCATGTGGATTAGCAAGATCCTGATT  937

seq1  ACAGGATCTAAATGACAGTAAACAAGCTGCTTACTCAGGGAAATCAGTTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATCTAAATGACAGTAAACAAGCTGCTTACTCAGGGAAATCAGTTG  987

seq1  TCTTGGTTTCCTGAGGAGGCAAAAAAGATTGAGGTAGCCTTTTAAAGAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTTTCCTGAGGAGGCAAAAAAGATTGAGGTAGCCTTTTAAAGAAA  1037

seq1  GAACTCCAAACTGGGTGTGGTGGTGCACGCCTTTAATCCCAGCACTTTCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCCAAACTGGGTGTGGTGGTGCACGCCTTTAATCCCAGCACTTTCA  1087

seq1  GGAAGAGGCAGATGGATCTAGGCCAGCCTGGTCTACACAGTGAATTC  1144
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGGCAGATGGATCTAGGCCAGCCTGGTCTACACAGTGAATTC  1134

seq1: chr13_75878938_75880013
seq2: B6Ng01-077G15.g_70_1132

seq1  GAATTCTAATGCTTAGATGCTTACAGCAAGTTTCTCCTAGACCTAAGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATGCTTAGATGCTTACAGCAAGTTTCTCCTAGACCTAAGCTT  50

seq1  AGTGCACAGTCTGCACACTGCACACTGCACACTGCAGAGCTGAGTGGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCACAGTCTGCACACTGCACACTGCACACTGCAGAGCTGAGTGGTAA  100

seq1  GAAGACCAGACAGATGATACTGAGAGACATGCTGGCTTGCTGAGCTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCAGACAGATGATACTGAGAGACATGCTGGCTTGCTGAGCTTCTG  150

seq1  CAGAGGTCGAAGAGAAAGAAAGACTTTTATTTTAGGTCATACGAATTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTCGAAGAGAAAGAAAGACTTTTATTTTAGGTCATACGAATTGGA  200

seq1  AAATGACTTTTTGGTTCAAAAGATCTACAGCCAAGAGAGTCGTTTTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACTTTTTGGTTCAAAAGATCTACAGCCAAGAGAGTCGTTTTGTTT  250

seq1  AACCTGGCATTTCCCAAACTTACTTGATGGTAGAATCCCCATTTTAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGCATTTCCCAAACTTACTTGATGGTAGAATCCCCATTTTAAATA  300

seq1  AAACTTTTCAGCATACTTTGGAAATACTGTTGGAAAGAAAGCAGACACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTTCAGCATACTTTGGAAATACTGTTGGAAAGAAAGCAGACACCA  350

seq1  GTTCTAGTTCTGCCTGAGACATTAATCAACATTTTTACTCACTCAGCGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAGTTCTGCCTGAGACATTAATCAACATTTTTACTCACTCAGCGAA  400

seq1  TACATATCGAGTGACTACTTTGTGCTCTGCACCATTCAAGATACTGGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATCGAGTGACTACTTTGTGCTCTGCACCATTCAAGATACTGGCAG  450

seq1  TACATTCACAAGCGCACAAAGGCGTCTGTCTTTGCACAGCTTATATTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCACAAGCGCACAAAGGCGTCTGTCTTTGCACAGCTTATATTCTA  500

seq1  GAGGGGGAAGAAATACCATAAACATAATATGTTAGTATTACAAGGTAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGAAGAAATACCATAAACATAATATGTTAGTATTACAAGGTAATG  550

seq1  AGTGTTTCAGACAGCCATGGAGCAGAGAAAGTGGTCTGAGAGTATAGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTCAGACAGCCATGGAGCAGAGAAAGTGGTCTGAGAGTATAGGGT  600

seq1  AGCAATTTTAAGCATGAATATAACCTTGGACAGCTTACTGGGCCTCTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTTTAAGCATGAATATAACCTTGGACAGCTTACTGGGCCTCTTTG  650

seq1  TCTCTAATTTATAAAACGAAGAATTTGAAAAATGATCTGGGCTCCCCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAATTTATAAAACGAAGAATTTGAAAAATGATCTGGGCTCCCCTGG  700

seq1  TCCTGTGGTTCAACTGAACAACCCCAAGAACGTCCATATCAAACTTCG-T  749
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCCTGTGGTTCAACTGAACAACCCCAAGAACGTCCATATCAAACTTCGTT  750

seq1  TACTGCTGGCTCATAAATGTCTGA-TAAAGCC-TTTCAGTCACTGTAGGA  797
      |||||||||||||||||||||||| ||||||| |||||||||||||||||
seq2  TACTGCTGGCTCATAAATGTCTGATTAAAGCCTTTTCAGTCACTGTAGGA  800

seq1  GAAAAAGTTAGGTATTAATGCTTATAATTACCGCACTGCCATTTAAGTCT  847
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAA-TTAGGTATTAATGCTTATAATTACCGCACTGCCATTTAAGTCT  849

seq1  TTTGTGATCGCCACAAAGCAAAACATTTAAATAAATAAAGCC-TTACTAG  896
      |||||||||||||| |||| |||||||||||||||||||||| |||||||
seq2  TTTGTGATCGCCAC-AAGC-AAACATTTAAATAAATAAAGCCTTTACTAG  897

seq1  ATTTCTTTTTAATCTAGCATATGCTTTGATCCTATATGGGGCTCAGGTAC  946
      |||   ||||||||||||||||||||||||||||||||||||||| ||| 
seq2  ATT--CTTTTAATCTAGCATATGCTTTGATCCTATATGGGGCTCA-GTA-  943

seq1  CAAACACTTTTAAGCAGATACCAGTGTGCATGAGTTTCAGCAGTGTATGC  996
      ||||||| |||||||||||||||||||||||||||||||||   | ||||
seq2  CAAACAC-TTTAAGCAGATACCAGTGTGCATGAGTTTCAGC--GGGATGC  990

seq1  TTGTACTTCTGCCCTAGATCCTTAAGATAGCCGGCCT-GTGACTGATGAT  1045
       |||||||||||||| ||||||  ||| ||||||||| |||||||| |||
seq2  -TGTACTTCTGCCCT-GATCCT--AGA-AGCCGGCCTGGTGACTGA-GAT  1034

seq1  GAAATGACCTTTCAGACAGTACTTTATTGCC  1076
      |||| |||  || |||  |||||||||||||
seq2  GAAAGGAC--TTTAGAACGTACTTTATTGCC  1063