BAC Information

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BAC

Clone NameB6Ng01-077H22
Chromosome13 (Build37)
Map Location 79,981,732 - 80,115,817
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666883, LOC666925
Downstream geneLOC382780, EG666933, Arrdc3, LOC666964, LOC100043074
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077H22.bB6Ng01-077H22.g
ACCDH893452DH893453
length1,1491,161
definitionDH893452|Mus musculus domesticus DNA, BAC clone: B6Ng01-077H22, 5' end.DH893453|Mus musculus domesticus DNA, BAC clone: B6Ng01-077H22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,981,732 - 79,982,895)(80,114,642 - 80,115,817)
sequence
gaattcactgctcatacctaaacatagtaaaaataatatacagcaaacca
gtagacaacttcaaactaaatgaagagaaatttgaaacaaccccattaaa
atcagggactagacaagtctgcccactctctccctacctattcaatatag
ttctcaaagtcctagccagaggaattacacaacaagaggaggtcaaaggg
acacaaatggggaaggaaggagacaaaatatcactatttgtagatgatat
gatagtatacttaactgaacacaaaaattacaccagagaactcctaatta
actttttaaaagttgctcatgtcaaaatgggaatgtgtagagatgacagt
cttaactgaataacattaggaaatggttattacacctgaacagaagcatc
tgcataatgttatatacactgtgcacatatgtctgtacacacatgttcat
aatatatgtcagttagcagacatagtttcaaatatctgaatcttttacat
catagggacaaaatcagtcagatgttttctttaaacttttacatctaggc
atatttttacaacatcccctgagaatctcaatgttattaacctcaaacaa
gaggttttttatgtatttgagtaaacatacttgcatgttatagtggcaag
agatgggggaggaaaagagaaagaggagtgattaggagatagagtaaaga
gaggagagaagaaggaggcatgcatggacgtgtcgcatgcacacacacac
acacacacacacacacacacacacacacagagagagagagagagagagag
agagagagagagagagaacacttaagcaagcatgtgtagaatgaggagga
aagagaaaggaggaaatgaagatgaaatatggaaagaaaatgagctacat
tcattgccacaatataatacagtatattcctcaaatattgtcgaagaaat
taacgtaatttctgtttatccaggtattttcatactaactttgaatatgg
gatttatagagtgatttatcattacatactttacacaaaatgtttatgtt
gaatctatttggtcctttgttcagtgaaaagtttttcaatgacctgcatc
ttctcagatttactcttatggaatgcttatctaaagaataatggacata
gaattcatactgattctgtgcacatggtacataggagttttccctcttaa
gaatgaaattaaaatgtatgaagattttatatatcttcataaaaaatttt
acaaaattaaaacgattaattttgcttccgagcattatacaaatgaatat
acaagagaacagtcaaataataatttaaactgaatgccaaacatttttgc
atactttgtgaaattataataattgattaagctcagaatgaatcaactaa
gaacagtcatccacactgaacgtatggtcatattctccaagtgtaatgca
acactatgctcagtaaagaagaatagccagataagtataaattttactta
agattttatcatttttctctacttagtttgactccacttgggtattttat
gacacaggactgaaaatgtgaccattactgtaattttttctattagtgaa
aattgcaacacaaaataggtaatgcccatggacaatagcacccctaaacg
tctctccacaaaagcttattttactgtcacttaaggaactcattcctctt
ccatgagacttacacgctgctttacaaatataacatactagcaacattgt
ggagaaccattattcttgctactggaattttttaaaacaagaaaaatcta
gcttgaaaataatgaccaagtgttcttagttctccgtaccaggtgttggg
tctcagagattttgtggaatgtgtaattttcttttagtttttctccatct
gaaaattagcaacatatgagacagtatgtatcatttttattaaaatcatt
tcatttttatcatatcagcgaaataaaaatagatcgacttcattataaat
aagagtggttaaaccctctcttattcagaagccactgcaagttcatatga
agatgggtttaccatgaaaactttttttaaacattttttttattagatat
ttcatcatttacattcaatgctatcccaaaagaccctataccctctcctc
ctgcattcacccatgcactatcacttctggcatggtatttccctgtatgg
gccatataatcttgcagaaccaaggcctctccttccatgatgtcaattag
acatcttcttgcttcatatgcgctaagaacatgaggccttgtgttaacgg
gggtaactggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_79981732_79982895
seq2: B6Ng01-077H22.b_46_1194

seq1  GAATTCACTGCTCATACCTAAACATAGTAAAAATAATATACAGCAAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGCTCATACCTAAACATAGTAAAAATAATATACAGCAAACCA  50

seq1  GTAGACAACTTCAAACTAAATGAAGAGAAATTTGAAACAACCCCATTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACAACTTCAAACTAAATGAAGAGAAATTTGAAACAACCCCATTAAA  100

seq1  ATCAGGGACTAGACAAGTCTGCCCACTCTCTCCCTACCTATTCAATATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGGACTAGACAAGTCTGCCCACTCTCTCCCTACCTATTCAATATAG  150

seq1  TTCTCAAAGTCCTAGCCAGAGGAATTACACAACAAGAGGAGGTCAAAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAAGTCCTAGCCAGAGGAATTACACAACAAGAGGAGGTCAAAGGG  200

seq1  ACACAAATGGGGAAGGAAGGAGACAAAATATCACTATTTGTAGATGATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAATGGGGAAGGAAGGAGACAAAATATCACTATTTGTAGATGATAT  250

seq1  GATAGTATACTTAACTGAACACAAAAATTACACCAGAGAACTCCTAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTATACTTAACTGAACACAAAAATTACACCAGAGAACTCCTAATTA  300

seq1  ACTTTTTAAAAGTTGCTCATGTCAAAATGGGAATGTGTAGAGATGACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTAAAAGTTGCTCATGTCAAAATGGGAATGTGTAGAGATGACAGT  350

seq1  CTTAACTGAATAACATTAGGAAATGGTTATTACACCTGAACAGAAGCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTGAATAACATTAGGAAATGGTTATTACACCTGAACAGAAGCATC  400

seq1  TGCATAATGTTATATACACTGTGCACATATGTCTGTACACACATGTTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAATGTTATATACACTGTGCACATATGTCTGTACACACATGTTCAT  450

seq1  AATATATGTCAGTTAGCAGACATAGTTTCAAATATCTGAATCTTTTACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATGTCAGTTAGCAGACATAGTTTCAAATATCTGAATCTTTTACAT  500

seq1  CATAGGGACAAAATCAGTCAGATGTTTTCTTTAAACTTTTACATCTAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGGACAAAATCAGTCAGATGTTTTCTTTAAACTTTTACATCTAGGC  550

seq1  ATATTTTTACAACATCCCCTGAGAATCTCAATGTTATTAACCTCAAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTACAACATCCCCTGAGAATCTCAATGTTATTAACCTCAAACAA  600

seq1  GAGGTTTTTTATGTATTTGAGTAAACATACTTGCATGTTATAGTGGCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTTTTATGTATTTGAGTAAACATACTTGCATGTTATAGTGGCAAG  650

seq1  AGATGGGGGAGGAAAAGAGAAAGAGGAGTGATTAGGAGATAGAGTAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGGGAGGAAAAGAGAAAGAGGAGTGATTAGGAGATAGAGTAAAGA  700

seq1  GAGGAGAGAAGAAGGAGGCATGCATGGACGTGTCGCATGCACACACACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAGAAGAAGGAGGCATGCATGGACGTGTCGCATGCACACACACAC  750

seq1  ACACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAG  800

seq1  AGAGAGAGAGAGAGAGAACACTTAAGCAAGCATGTGTAGAATGAGGAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAACACTTAAGCAAGCATGTGTAGAATGAGGAGGA  850

seq1  AAGAGAAAGGAGGAAATGAAGATGAAATATGGAAAGAAAATGAGCTACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAGAGAAAGGAGGAAATGAAGATGAAATATGGAAAGAAAATGAGCTACA-  899

seq1  TTCATTGCCACAAATATAATACAGTATATTCCTCAAATATTTGTCGAAGA  950
      ||||||||||| ||||||||||||||||||||||||||| ||||||||||
seq2  TTCATTGCCAC-AATATAATACAGTATATTCCTCAAATA-TTGTCGAAGA  947

seq1  AATTAACGTAAATTTCTGTTTATCCAGGGTATTTTCATACTAACTTTG-A  999
      ||||||||| |||||||||||||||| ||||||||||||||||||||| |
seq2  AATTAACGT-AATTTCTGTTTATCCA-GGTATTTTCATACTAACTTTGAA  995

seq1  TATTGGATTTATAAGAGTGATTTATCATTACATACCTTTACACAAAATGT  1049
      ||| |||||||| ||||||||||||||||||||| |||||||||||||||
seq2  TATGGGATTTAT-AGAGTGATTTATCATTACATA-CTTTACACAAAATGT  1043

seq1  TTATGTTGAACCTATTTTGGTCCTTTGTTCAGTGAAAAAGTTTTTTCAAT  1099
      |||||||||| ||| |||||||||||||||||||||||   |||||||||
seq2  TTATGTTGAATCTA-TTTGGTCCTTTGTTCAGTGAAAA--GTTTTTCAAT  1090

seq1  GACTTGCCATCTTTCTCAGTATTTACTCTTATTGAATGCCTTATTCTTAA  1149
      ||| || |||| ||||||| |||||||||||| ||||| |||||   |||
seq2  GACCTG-CATC-TTCTCAG-ATTTACTCTTATGGAATG-CTTAT--CTAA  1134

seq1  AGATATATGGACATA  1164
      |||   |||||||||
seq2  AGAATAATGGACATA  1149

seq1: chr13_80114642_80115817
seq2: B6Ng01-077H22.g_68_1228 (reverse)

seq1  ACCAGTACACCCCGTTAAACACAAG--CTCATGTCTCTAGCCGCATATGT  48
      ||||||   ||||||| ||||||||  ||||||| |||   |||||||| 
seq2  ACCAGTTACCCCCGTT-AACACAAGGCCTCATGT-TCTTAGCGCATATGA  48

seq1  AGC-AGAAGATGGTCTAATTGGCCATCATTGGGAGGAGAGGCCCTTGGTC  97
      ||| ||||||| |||||||| | ||||| ||| |||||||| ||||||| 
seq2  AGCAAGAAGAT-GTCTAATT-GACATCA-TGGAAGGAGAGG-CCTTGGTT  94

seq1  TTGCAAAGATTATATGCCCCAATACAGGGGAATACCATGGCCAGGAAGTG  147
       ||| ||||||||||| ||| |||||||| |||||||| |||| ||||||
seq2  CTGC-AAGATTATATGGCCC-ATACAGGGAAATACCAT-GCCA-GAAGTG  140

seq1  ATAGTGCATGGGTTGGAATGCAGGGAGGGAGAGGGTATAAGGGTCTTTTG  197
      |||||||||||||  |||||||||   ||||||||||| |||||||||||
seq2  ATAGTGCATGGGT--GAATGCAGG--AGGAGAGGGTAT-AGGGTCTTTTG  185

seq1  GGATAGCATTGAATTGTAAATGATGAAAATATCTAATAAAAAAATTGTTT  247
      ||||||||||||| ||||||||||| |||||||||||||||||| |||||
seq2  GGATAGCATTGAA-TGTAAATGATG-AAATATCTAATAAAAAAAATGTTT  233

seq1  AAAAAAAGTTTTCATGGTAAACCCATCTTCATATTGAACTTGCAGTGGCT  297
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAAAAAAGTTTTCATGGTAAACCCATCTTCATA-TGAACTTGCAGTGGCT  282

seq1  TCTGAATAAGAGAGGGTTTAACCACTCTTATTTATAATGAAGTCGATCTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATAAGAGAGGGTTTAACCACTCTTATTTATAATGAAGTCGATCTA  332

seq1  TTTTTATTTCGCTGATATGATAAAAATGAAATGATTTTAATAAAAATGAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTCGCTGATATGATAAAAATGAAATGATTTTAATAAAAATGAT  382

seq1  ACATACTGTCTCATATGTTGCTAATTTTCAGATGGAGAAAAACTAAAAGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTGTCTCATATGTTGCTAATTTTCAGATGGAGAAAAACTAAAAGA  432

seq1  AAATTACACATTCCACAAAATCTCTGAGACCCAACACCTGGTACGGAGAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACACATTCCACAAAATCTCTGAGACCCAACACCTGGTACGGAGAA  482

seq1  CTAAGAACACTTGGTCATTATTTTCAAGCTAGATTTTTCTTGTTTTAAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAACACTTGGTCATTATTTTCAAGCTAGATTTTTCTTGTTTTAAAA  532

seq1  AATTCCAGTAGCAAGAATAATGGTTCTCCACAATGTTGCTAGTATGTTAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAGTAGCAAGAATAATGGTTCTCCACAATGTTGCTAGTATGTTAT  582

seq1  ATTTGTAAAGCAGCGTGTAAGTCTCATGGAAGAGGAATGAGTTCCTTAAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAAAGCAGCGTGTAAGTCTCATGGAAGAGGAATGAGTTCCTTAAG  632

seq1  TGACAGTAAAATAAGCTTTTGTGGAGAGACGTTTAGGGGTGCTATTGTCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTAAAATAAGCTTTTGTGGAGAGACGTTTAGGGGTGCTATTGTCC  682

seq1  ATGGGCATTACCTATTTTGTGTTGCAATTTTCACTAATAGAAAAAATTAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCATTACCTATTTTGTGTTGCAATTTTCACTAATAGAAAAAATTAC  732

seq1  AGTAATGGTCACATTTTCAGTCCTGTGTCATAAAATACCCAAGTGGAGTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGGTCACATTTTCAGTCCTGTGTCATAAAATACCCAAGTGGAGTC  782

seq1  AAACTAAGTAGAGAAAAATGATAAAATCTTAAGTAAAATTTATACTTATC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAGTAGAGAAAAATGATAAAATCTTAAGTAAAATTTATACTTATC  832

seq1  TGGCTATTCTTCTTTACTGAGCATAGTGTTGCATTACACTTGGAGAATAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATTCTTCTTTACTGAGCATAGTGTTGCATTACACTTGGAGAATAT  882

seq1  GACCATACGTTCAGTGTGGATGACTGTTCTTAGTTGATTCATTCTGAGCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATACGTTCAGTGTGGATGACTGTTCTTAGTTGATTCATTCTGAGCT  932

seq1  TAATCAATTATTATAATTTCACAAAGTATGCAAAAATGTTTGGCATTCAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAATTATTATAATTTCACAAAGTATGCAAAAATGTTTGGCATTCAG  982

seq1  TTTAAATTATTATTTGACTGTTCTCTTGTATATTCATTTGTATAATGCTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTATTATTTGACTGTTCTCTTGTATATTCATTTGTATAATGCTC  1032

seq1  GGAAGCAAAATTAATCGTTTTAATTTTGTAAAATTTTTTATGAAGATATA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAAAATTAATCGTTTTAATTTTGTAAAATTTTTTATGAAGATATA  1082

seq1  TAAAATCTTCATACATTTTAATTTCATTCTTAAGAGGGAAAACTCCTATG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCTTCATACATTTTAATTTCATTCTTAAGAGGGAAAACTCCTATG  1132

seq1  TACCATGTGCACAGAATCAGTATGAATTC  1176
      |||||||||||||||||||||||||||||
seq2  TACCATGTGCACAGAATCAGTATGAATTC  1161