BAC Information

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BAC

Clone NameB6Ng01-077N03
Chromosome13 (Build37)
Map Location 38,271,802 - 38,369,269
singlet/doubletdoublet
Overlap geneDsp, 6530403A03Rik
Upstream geneLy86, LOC100042794, LOC100042800, LOC100042802, LOC100041624, Rreb1, Ssr1, Cage1, Riok1
Downstream geneBmp6, Txndc5, Muted, Eef1e1, LOC621102, Slc35b3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077N03.bB6Ng01-077N03.g
ACCDH893696DH893697
length1,174566
definitionDH893696|Mus musculus domesticus DNA, BAC clone: B6Ng01-077N03, 5' end.DH893697|Mus musculus domesticus DNA, BAC clone: B6Ng01-077N03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,368,090 - 38,369,269)(38,271,802 - 38,272,373)
sequence
gaattctcaaagttactctggaagactggagacagggggagagagggtag
tgaggactgtaattccaagtgactctgctctcaaactcattgccaagaat
tacacacaactacagaataattggagaataagataaatatgacgtatctt
ttcagaaaatctacttttcttcaatagaaagtaatttaaaacatggctca
tgtagtacacagatataatgaacagatagagtgaaaagttgacgttaatt
ttaagataaaccgttatcttcaaagagttgtcagacgcaccatggatgcc
taaactaaaataacccacataatggagagaaggaagaaacccaaaacttt
tttttccagtcagatatgaggaagcatggtcttcatttatgaaattgatc
caataacccaagcaaacagtgtactggcaagtcagttttagcatccaagg
gaacagccatcgagtatggttgagtaatggacctgcatgctattgcctac
agatccatggggaaataatttgaaatcaaagttgagcagccttctatttt
aagtaggacttaaacctctggaactgtgaaaggattgctcatctttcttt
ctgctagacgttcggcaacataattcagcaaattacgcagtgctgcgagt
cacactggtaagcaggatataacaacgccttggtaagttgtccaggaatg
tgtcataacgagctctgaaactggacagtagtagcaaaaccaatgtctgg
aggattccggggagcttgggagcaaaggccacctcattcatccctgaggt
ctgggatgtttcttctagtctggctcactgaggtttttaggaaggtgggt
aggactaccaataaagctgtgcaaggtaggctgtaatgagactgattttg
tactccagggaaataccatcccctgaagctttcaagacttctcaaagcaa
tagcaatatctgtgaaccaagtgttcagttacatgcacctatgggagact
ttcatgtccaaatcacatagctattcctggtccctacagctcaatgtgtc
tcatagtacaaaataattcccatctgatttcaaagtcaccggagtcttaa
ctatcttcatgctggtcaaaatgtcaaagtctacctaagactgttttttt
tttattaaagaaaataaggtaagt
cctttcatagaaaggcagctcagggaagagaccttatttcaaggaaaaac
caaaaccaaacaacaacagaaacaaaaagccaataacaacaacaaataaa
gcagaaagggaagaaaggaaagaaggaaagaaaaagaaaaaaaggaggaa
gaaaagacaaaagaaggaaggaaggtaggaaagaaagacagacaatagta
gactggattgaaatatgaggtgaaaatttatgttcagacgaacagttgcc
ttaatacgcaggttggttttttttttttctggttgttttggttttcttct
tctgtggtgtgagggatcagggtgaagaaagcactttgtcactaagctgc
acctccagcctgtcagtagccatgttaagaagctctatacagccaggtgc
tgtgtcacataccttagtcttcacattcattcaggaggatctctgtgagt
tcaaggtcatcgtggtctacatagtaagttttaggccatcccacccaggc
tacacagtacaattctgcctgtgtaaataaataaagggggggggttggaa
ttaattatttgaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_38368090_38369269
seq2: B6Ng01-077N03.b_46_1219 (reverse)

seq1  ACTTA---TATTTTCTTTTAATTAAAAAAAAAACAGTCTTAGGGTAGACT  47
      |||||   ||||||||||  | ||||||||||||||||||| ||||||||
seq2  ACTTACCTTATTTTCTTT--AATAAAAAAAAAACAGTCTTA-GGTAGACT  47

seq1  TTGACATTTTTGACCAGCATGAAGATAGTTAAGACTCCGGTGACCTTTGA  97
      |||||| |||||||||||||||||||||||||||||||||||| ||||||
seq2  TTGACA-TTTTGACCAGCATGAAGATAGTTAAGACTCCGGTGA-CTTTGA  95

seq1  AATCAGATGGGATGTATTTTGTACTATGAGACGGCCATGAGCCTGTAGGG  147
      ||||||||||||  ||||||||||||||||||  |  |||| ||||||||
seq2  AATCAGATGGGAATTATTTTGTACTATGAGAC-ACATTGAG-CTGTAGGG  143

seq1  ACCAGGAATAGCCTATTGTGATTTGGACATGAAAGTCTCCCATAGGTGCA  197
      ||||||||||| ||| ||||||||||||||||||||||||||||||||||
seq2  ACCAGGAATAG-CTA-TGTGATTTGGACATGAAAGTCTCCCATAGGTGCA  191

seq1  TGTAACTGAACACTTGGTTCACAGATATTGCTATTGCTTTGAGAAGTCTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTGAACACTTGGTTCACAGATATTGCTATTGCTTTGAGAAGTCTT  241

seq1  GAAAGCTTCAGGGGATGGTATTTCCCTGGAGTACAAAATCAGTCTCATTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTTCAGGGGATGGTATTTCCCTGGAGTACAAAATCAGTCTCATTA  291

seq1  CAGCCTACCTTGCACAGCTTTATTGGTAGTCCTACCCACCTTCCTAAAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTACCTTGCACAGCTTTATTGGTAGTCCTACCCACCTTCCTAAAAA  341

seq1  CCTCAGTGAGCCAGACTAGAAGAAACATCCCAGACCTCAGGGATGAATGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTGAGCCAGACTAGAAGAAACATCCCAGACCTCAGGGATGAATGA  391

seq1  GGTGGCCTTTGCTCCCAAGCTCCCCGGAATCCTCCAGACATTGGTTTTGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCCTTTGCTCCCAAGCTCCCCGGAATCCTCCAGACATTGGTTTTGC  441

seq1  TACTACTGTCCAGTTTCAGAGCTCGTTATGACACATTCCTGGACAACTTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTGTCCAGTTTCAGAGCTCGTTATGACACATTCCTGGACAACTTA  491

seq1  CCAAGGCGTTGTTATATCCTGCTTACCAGTGTGACTCGCAGCACTGCGTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCGTTGTTATATCCTGCTTACCAGTGTGACTCGCAGCACTGCGTA  541

seq1  ATTTGCTGAATTATGTTGCCGAACGTCTAGCAGAAAGAAAGATGAGCAAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTGAATTATGTTGCCGAACGTCTAGCAGAAAGAAAGATGAGCAAT  591

seq1  CCTTTCACAGTTCCAGAGGTTTAAGTCCTACTTAAAATAGAAGGCTGCTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCACAGTTCCAGAGGTTTAAGTCCTACTTAAAATAGAAGGCTGCTC  641

seq1  AACTTTGATTTCAAATTATTTCCCCATGGATCTGTAGGCAATAGCATGCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGATTTCAAATTATTTCCCCATGGATCTGTAGGCAATAGCATGCA  691

seq1  GGTCCATTACTCAACCATACTCGATGGCTGTTCCCTTGGATGCTAAAACT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCATTACTCAACCATACTCGATGGCTGTTCCCTTGGATGCTAAAACT  741

seq1  GACTTGCCAGTACACTGTTTGCTTGGGTTATTGGATCAATTTCATAAATG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGCCAGTACACTGTTTGCTTGGGTTATTGGATCAATTTCATAAATG  791

seq1  AAGACCATGCTTCCTCATATCTGACTGGAAAAAAAAGTTTTGGGTTTCTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCATGCTTCCTCATATCTGACTGGAAAAAAAAGTTTTGGGTTTCTT  841

seq1  CCTTCTCTCCATTATGTGGGTTATTTTAGTTTAGGCATCCATGGTGCGTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCTCCATTATGTGGGTTATTTTAGTTTAGGCATCCATGGTGCGTC  891

seq1  TGACAACTCTTTGAAGATAACGGTTTATCTTAAAATTAACGTCAACTTTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACTCTTTGAAGATAACGGTTTATCTTAAAATTAACGTCAACTTTT  941

seq1  CACTCTATCTGTTCATTATATCTGTGTACTACATGAGCCATGTTTTAAAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTATCTGTTCATTATATCTGTGTACTACATGAGCCATGTTTTAAAT  991

seq1  TACTTTCTATTGAAGAAAAGTAGATTTTCTGAAAAGATACGTCATATTTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCTATTGAAGAAAAGTAGATTTTCTGAAAAGATACGTCATATTTA  1041

seq1  TCTTATTCTCCAATTATTCTGTAGTTGTGTGTAATTCTTGGCAATGAGTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTCTCCAATTATTCTGTAGTTGTGTGTAATTCTTGGCAATGAGTT  1091

seq1  TGAGAGCAGAGTCACTTGGAATTACAGTCCTCACTACCCTCTCTCCCCCT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCAGAGTCACTTGGAATTACAGTCCTCACTACCCTCTCTCCCCCT  1141

seq1  GTCTCCAGTCTTCCAGAGTAACTTTGAGAATTC  1180
      |||||||||||||||||||||||||||||||||
seq2  GTCTCCAGTCTTCCAGAGTAACTTTGAGAATTC  1174

seq1: chr13_38271802_38272373
seq2: B6Ng01-077N03.g_71_642

seq1  GAATTCCCTTACATAGAAAGGCAGCTCAGGGAAGAGACCTTATTTCAAGG  50
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTTCATAGAAAGGCAGCTCAGGGAAGAGACCTTATTTCAAGG  50

seq1  AAAAACCAAAACCAAACAACAACAGAAACAAAAAGCCAATAACAACAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCAAAACCAAACAACAACAGAAACAAAAAGCCAATAACAACAACA  100

seq1  AATAAAGCAGAAAGGGAAGAAAGGAAAGAAGGAAAGAAAAAGAAAAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGCAGAAAGGGAAGAAAGGAAAGAAGGAAAGAAAAAGAAAAAAAG  150

seq1  GAGGAAGAAAAGACAAAAGAAGGAAGGAAGGTAGGAAAGAAAGACAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGAAAAGACAAAAGAAGGAAGGAAGGTAGGAAAGAAAGACAGACA  200

seq1  ATAGTAGACTGGATTGAAATATGAGGTGAAAATTTATGTTCAGACGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGACTGGATTGAAATATGAGGTGAAAATTTATGTTCAGACGAACA  250

seq1  GTTGCCTTAATACGCAGGTTGGTTTTTTTTTTTTCTGGTTGTTTTGGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTTAATACGCAGGTTGGTTTTTTTTTTTTCTGGTTGTTTTGGTTT  300

seq1  TCTTCTTCTGTGGTGTGAGGGATCAGGGTGAAGAAAGCACTTTGTCACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCTGTGGTGTGAGGGATCAGGGTGAAGAAAGCACTTTGTCACTA  350

seq1  AGCTGCACCTCCAGCCTGTCAGTAGCCATGTTAAGAAGCTCTATACAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCACCTCCAGCCTGTCAGTAGCCATGTTAAGAAGCTCTATACAGCC  400

seq1  AGGTGCTGTGTCACATACCTTAGTCTTCACATTCATTCAGGAGGATCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTGTGTCACATACCTTAGTCTTCACATTCATTCAGGAGGATCTCT  450

seq1  GTGAGTTCAAGGTCATCGTGGTCTACATAGTAAGTTTTAGGCCATCCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCAAGGTCATCGTGGTCTACATAGTAAGTTTTAGGCCATCCCAC  500

seq1  CCAGGCTACACAGTACAATTCTGCCTGTGTAAATAAATAAAGGGGGGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTACACAGTACAATTCTGCCTGTGTAAATAAATAAAGGGGGGGGG  550

seq1  TTGGAATTAATTATTTGAATTT  572
      ||||||||||||||||||||||
seq2  TTGGAATTAATTATTTGAATTT  572