BAC Information

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BAC

Clone NameB6Ng01-078K17
Chromosome13 (Build37)
Map Location 112,970,957 - 113,134,196
singlet/doubletdoublet
Overlap geneLOC100041161, LOC100041175, Ankrd55
Upstream gene4732495G21Rik, LOC100040640, EG621953, Gpbp1, LOC100040666, Mier3, Map3k1, LOC668181, LOC100040716
Downstream geneLOC100040725, Il6st, Il31ra, LOC100041240, Ddx4, 9130023D20Rik, Ppap2a, LOC100041282, Skiv2l2, Dhx29, LOC667756, Ccnu, EG622408, EG622422, 2310016C16Rik, Cdc20b, Gzma, 1700084D21Rik, Gzmk, Esm1, BC067074
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078K17.bB6Ng01-078K17.g
ACCDH894304DH894305
length9411,136
definitionDH894304|Mus musculus domesticus DNA, BAC clone: B6Ng01-078K17, 5' end.DH894305|Mus musculus domesticus DNA, BAC clone: B6Ng01-078K17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,133,249 - 113,134,196)(112,970,957 - 112,972,102)
sequence
gaattccatttttatgaaaaataaacatcagttcaaagaccggaagaata
attcacactaacttaggaatataagaacacatgttctttgacagggtatg
tcttgaggtcaccctagagctcagtgccggttgtagctggtggtgcacag
gatggccgttgtgaaatgccgatgagtaactctatgtcctgagccagaac
attccatttcaacgtctgcttagctgacaggtactgaaagaatctcagag
ctccctctctgacaaccactgctaactttttttttctgaaccagaaatct
gactcatgtgaagcaattttactatcacctctccttaacactgaaggaca
cagagagtaatgatgatgtgagcacacaaagtgtctggcttgtcctaggt
gttgcagaggacaggacaatagcagggagctgagagataagcaaaacatc
tccacacctcgaaggatctagaactgcatggaaactcagcctctccctcc
ttggtatttaaaaactgaatggaaaaaaaaaaaaaaaaagacatgactgt
ttcctagacatgaactgagaagttttactgtatatgaattgggccatgag
agaatagggggtgaggagagagagagagagcaagagaagagagagggtgg
gtaagaggcaggagcatgccaggagaccaaccaacaggccaggaggccgg
gtttccaaaatggttgttgttatataggaaagagaagctggggacaggga
aggggaaaccccgcccctggtaggcagagcttagggtaggggcggggtga
gagatgctggaggatccacatgtacagcgtgagagctaccagcatcttct
ttgatatatcaacaggcacctcagctttttgtcctggtttcttgaggtca
aacaaaatcacataatattaacctccccagtcacatgtggg
gaattctttatgaccttgtgttaaaacaacaatgtcctagatatgacacc
aaacatactgttcataaaagaaaaaaaagtaacttgagcatcaacaaaac
taatctgcttctttaagtaaccattagaaagaaaacttacagagcaaaag
aaaatatttgaaatcatacctcgtgtcttatctctgataaaggacatgaa
tcaagaatatagcaactggcaacagttcctgagctcaaaagaaaaatatg
caaattaacctcaagaatgcacagagatgtaaatacacaacgcagcctac
atctagcgagaaggtcattatgattgtcagtgtgaagaaggagcccgccc
accctcagcccctcaggtccacagcagctccaacggaagcagcaacacaa
gcagcttggtctctgggagagtgtccactcagcccggtccttgcatctca
aaggaattagatgagaaaagacattcaatatcttttgtgtctagggtagt
gagaattaaagatatacttattaggatggccaaaagttattaaaacaaac
tgaataaaaatggacaactgatactccttatagtattagtaaggtgttcc
aaccacttcatgaataaggtcggcaatttctggaaaagttgaacttttat
taagaaatactgatacactcaaattcttaacacagaagccagcagctaca
aggtaacccttatttccatcagcgaataaaagattaaacgatggggctgg
agagatggctcagcagttaagagaactagctgctattttatgggggcctg
ggttcaatttctaggctcacacaacagctcgcagatggctgtaattccag
tttcaaaggctattcggaagtcctcttgtggcctagctatgtgctacatg
tacacactgcacagacatacacggaagcaatgcaccggacacataaaata
acactaaacgaatctttaaaaaaaaagtttaaattaaattcgcacatcca
ttgaatattattttgtattcagaagagcgaagccctggtcttcctggaaa
ctgtatatcagactttggacttgcgaataaattcacttcagacacacata
cacactacaaaatctctcatttagttgagtttctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_113133249_113134196
seq2: B6Ng01-078K17.b_45_985 (reverse)

seq1  CCCACATGTGACTGGGGA-GTTAATATTATGTGAATTTTTGTTTGACCTC  49
      |||||||||||||||||| |||||||||||||||  ||||||||||||||
seq2  CCCACATGTGACTGGGGAGGTTAATATTATGTGA--TTTTGTTTGACCTC  48

seq1  AAAGAAACCAGGGACAAAAGGCTGAGGTGCCTGTTGATATATCAAAGTAG  99
       ||||||||| |||||||| ||||||||||||||||||||||||||| ||
seq2  -AAGAAACCA-GGACAAAAAGCTGAGGTGCCTGTTGATATATCAAAGAAG  96

seq1  GTGCTGGTTAGCTCTCACGCTGTACCTGTGGCTCCTCCCAGCATCTCTCA  149
       |||||| ||||||||||||||||| ||||| |||| |||||||||||||
seq2  ATGCTGG-TAGCTCTCACGCTGTACATGTGGATCCT-CCAGCATCTCTCA  144

seq1  CCCCGCCCCCTACCCTAAAGCTCTGCCTACCAGGGGCGGGGTTTCCCCTT  199
      ||||| |||||||||| |||||||||||||||||||||||||||||||||
seq2  CCCCG-CCCCTACCCT-AAGCTCTGCCTACCAGGGGCGGGGTTTCCCCTT  192

seq1  CCCTGTCCCCAGCTTCTCTTTCCTATATAACAACAACCATTTTGGAAACC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCCCCAGCTTCTCTTTCCTATATAACAACAACCATTTTGGAAACC  242

seq1  CGGCCTCCTGGCCTGTTGGTTGGTCTCCTGGCATGCTCCTGCCTCTTACC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCTCCTGGCCTGTTGGTTGGTCTCCTGGCATGCTCCTGCCTCTTACC  292

seq1  CACCCTCTCTCTTCTCTTGCTCTCTCTCTCTCTCCTCACCCCCTATTCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCTCTCTTCTCTTGCTCTCTCTCTCTCTCCTCACCCCCTATTCTC  342

seq1  TCATGGCCCAATTCATATACAGTAAAACTTCTCAGTTCATGTCTAGGAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCCCAATTCATATACAGTAAAACTTCTCAGTTCATGTCTAGGAAA  392

seq1  CAGTCATGTCTTTTTTTTTTTTTTTTTCCATTCAGTTTTTAAATACCAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATGTCTTTTTTTTTTTTTTTTTCCATTCAGTTTTTAAATACCAAG  442

seq1  GAGGGAGAGGCTGAGTTTCCATGCAGTTCTAGATCCTTCGAGGTGTGGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGAGGCTGAGTTTCCATGCAGTTCTAGATCCTTCGAGGTGTGGAG  492

seq1  ATGTTTTGCTTATCTCTCAGCTCCCTGCTATTGTCCTGTCCTCTGCAACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTGCTTATCTCTCAGCTCCCTGCTATTGTCCTGTCCTCTGCAACA  542

seq1  CCTAGGACAAGCCAGACACTTTGTGTGCTCACATCATCATTACTCTCTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGACAAGCCAGACACTTTGTGTGCTCACATCATCATTACTCTCTGT  592

seq1  GTCCTTCAGTGTTAAGGAGAGGTGATAGTAAAATTGCTTCACATGAGTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCAGTGTTAAGGAGAGGTGATAGTAAAATTGCTTCACATGAGTCA  642

seq1  GATTTCTGGTTCAGAAAAAAAAAGTTAGCAGTGGTTGTCAGAGAGGGAGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTGGTTCAGAAAAAAAAAGTTAGCAGTGGTTGTCAGAGAGGGAGC  692

seq1  TCTGAGATTCTTTCAGTACCTGTCAGCTAAGCAGACGTTGAAATGGAATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGATTCTTTCAGTACCTGTCAGCTAAGCAGACGTTGAAATGGAATG  742

seq1  TTCTGGCTCAGGACATAGAGTTACTCATCGGCATTTCACAACGGCCATCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCTCAGGACATAGAGTTACTCATCGGCATTTCACAACGGCCATCC  792

seq1  TGTGCACCACCAGCTACAACCGGCACTGAGCTCTAGGGTGACCTCAAGAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACCACCAGCTACAACCGGCACTGAGCTCTAGGGTGACCTCAAGAC  842

seq1  ATACCCTGTCAAAGAACATGTGTTCTTATATTCCTAAGTTAGTGTGAATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTGTCAAAGAACATGTGTTCTTATATTCCTAAGTTAGTGTGAATT  892

seq1  ATTCTTCCGGTCTTTGAACTGATGTTTATTTTTCATAAAAATGGAATTC  948
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCCGGTCTTTGAACTGATGTTTATTTTTCATAAAAATGGAATTC  941

seq1: chr13_112970957_112972102
seq2: B6Ng01-078K17.g_70_1205

seq1  GAATTCTTTATGACCTTGTGTTAAAACAACAATGTCCTAGATATGACACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATGACCTTGTGTTAAAACAACAATGTCCTAGATATGACACC  50

seq1  AAACATACTGTTCATAAAAGAAAAAAAAGTAACTTGAGCATCAACAAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATACTGTTCATAAAAGAAAAAAAAGTAACTTGAGCATCAACAAAAC  100

seq1  TAATCTGCTTCTTTAAGTAACCATTAGAAAGAAAACTTACAGAGCAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTGCTTCTTTAAGTAACCATTAGAAAGAAAACTTACAGAGCAAAAG  150

seq1  AAAATATTTGAAATCATACCTCGTGTCTTATCTCTGATAAAGGACATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTGAAATCATACCTCGTGTCTTATCTCTGATAAAGGACATGAA  200

seq1  TCAAGAATATAGCAACTGGCAACAGTTCCTGAGCTCAAAAGAAAAATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAATATAGCAACTGGCAACAGTTCCTGAGCTCAAAAGAAAAATATG  250

seq1  CAAATTAACCTCAAGAATGCACAGAGATGTAAATACACAACGCAGCCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTAACCTCAAGAATGCACAGAGATGTAAATACACAACGCAGCCTAC  300

seq1  ATCTAGCGAGAAGGTCATTATGATTGTCAGTGTGAAGAAGGAGCCCGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGCGAGAAGGTCATTATGATTGTCAGTGTGAAGAAGGAGCCCGCCC  350

seq1  ACCCTCAGCCCCTCAGGTCCACAGCAGCTCCAACGGAAGCAGCAACACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCAGCCCCTCAGGTCCACAGCAGCTCCAACGGAAGCAGCAACACAA  400

seq1  GCAGCTTGGTCTCTGGGAGAGTGTCCACTCAGCCCGGTCCTTGCATCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTTGGTCTCTGGGAGAGTGTCCACTCAGCCCGGTCCTTGCATCTCA  450

seq1  AAGGAATTAGATGAGAAAAGACATTCAATATCTTTTGTGTCTAGGGTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATTAGATGAGAAAAGACATTCAATATCTTTTGTGTCTAGGGTAGT  500

seq1  GAGAATTAAAGATATACTTATTAGGATGGCCAAAAGTTATTAAAACAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTAAAGATATACTTATTAGGATGGCCAAAAGTTATTAAAACAAAC  550

seq1  TGAATAAAAATGGACAACTGATACTCCTTATAGTATTAGTAAGGTGTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAAAATGGACAACTGATACTCCTTATAGTATTAGTAAGGTGTTCC  600

seq1  AACCACTTCATGAATAAGGTCGGCAATTTCTGGAAAAGTTGAACTTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTTCATGAATAAGGTCGGCAATTTCTGGAAAAGTTGAACTTTTAT  650

seq1  TAAGAAATACTGATACACTCAAATTCTTAACACAGAAGCCAGCAGCTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAATACTGATACACTCAAATTCTTAACACAGAAGCCAGCAGCTACA  700

seq1  AGGTAACCCTTATTTCCATCAGCGAATAAAAGATTAAACGATGGGGCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAACCCTTATTTCCATCAGCGAATAAAAGATTAAACGATGGGGCTGG  750

seq1  AGAGATGGCTCAGCAGTTAAGAGAACTAGCTGCTATTTCAGGGGGGCCTG  800
      |||||||||||||||||||||||||||||||||||||| | |||||||||
seq2  AGAGATGGCTCAGCAGTTAAGAGAACTAGCTGCTATTTTATGGGGGCCTG  800

seq1  GGTTCAATTTCTAGGCTCACACAACAGCTCGCAGATGGCTGTAATTCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAATTTCTAGGCTCACACAACAGCTCGCAGATGGCTGTAATTCCAG  850

seq1  TTTCAAAGGCTATTCGGAAGTCCTCTTGTGGCCTAGCTATGTGCTACATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAGGCTATTCGGAAGTCCTCTTGTGGCCTAGCTATGTGCTACATG  900

seq1  TACACACTGCACAGACATACACGGAAGCAATGCACCGGAACACATAAAAT  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TACACACTGCACAGACATACACGGAAGCAATGCACCGG-ACACATAAAAT  949

seq1  AACACTAAACGAATCTTTAAAAAAAAAAAGTTTAAATTAAATTCGCACAT  1000
      ||||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  AACACTAAACGAATCTTT--AAAAAAAAAGTTTAAATTAAATTCGCACAT  997

seq1  CCATTGAAATATTATTTAGTATTCAGAAGAAGCGAAGCCCTGGCCTTCCT  1050
      |||||| |||||||||| ||||||||||| ||||||||||||| ||||||
seq2  CCATTG-AATATTATTTTGTATTCAGAAG-AGCGAAGCCCTGGTCTTCCT  1045

seq1  -GATACTGTATATCAGAACCTTGGGGACTTTGCGAAGGGAAATCAC-TCA  1098
       || |||||||||||||  |||  |||| |||||||   || |||| |||
seq2  GGAAACTGTATATCAGA--CTT-TGGAC-TTGCGAA-TAAATTCACTTCA  1090

seq1  CACACACACACACACACACACAAAATCTCATTTATGTGAGTTTTCTAA  1146
       ||||||| ||||||  ||| ||  |||||||||  |||| |||||||
seq2  GACACACATACACAC-TACAAAATCTCTCATTTAGTTGAG-TTTCTAA  1136