BAC Information

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BAC

Clone NameB6Ng01-078O11
Chromosome13 (Build37)
Map Location 83,185,893 - 83,345,666
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC238756, LOC667018
Downstream geneMef2c, LOC100043111, LOC623241, LOC432789, 2810049E08Rik, LOC100043119, LOC667081, LOC667101
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078O11.bB6Ng01-078O11.g
ACCDH894478DH894479
length917885
definitionDH894478|Mus musculus domesticus DNA, BAC clone: B6Ng01-078O11, 5' end.DH894479|Mus musculus domesticus DNA, BAC clone: B6Ng01-078O11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,345,113 - 83,345,666)(83,185,893 - 83,186,776)
sequence
gaattcagaacatccatagctacatagcacagagaccactcctcaaacaa
acaaacatctatccatattatgtatactttatgtaagctgataactaata
tctttttctgtgattctttcacacagccttactgtcctttgttcctccct
tgttggtcttcctctgtactagcctctaattcctgtttctaactaacacc
tcccacgcttcccctccctctcagagcagctgtcttgctatccccacagg
tggtgtgtgttttctttgtctaatatcaggtgcctctgtaatttaaattt
aaaactgatatgtcaatccctccagcattactctttttggtcagtattgc
tatagctatctggaggtttccaagcttccaaatgaaggttaaaatatttt
gctctatttctctgaagaatgttgtgaaattttaattggaattgaattga
atccattctattctttttgtaggtcaaatattttcgcaatgttaagtctt
ccaacacatgagtgtaagagatctttccatcttctatgacttcttcaact
tctttcttcaaaaattaaattgtttcactgtatttcaactccttgttcag
gcttattcccggttattttgtgaggctactataaatgaaagtatttccat
tatgctctttttagattagtacataaaaaggctactaaattttgtactta
atttttctattctgccactttgcttaaaaatgttaatcttttctagtttt
ctttgggggggggttctttaagatttcttcttgtaatgcgctacttcaat
caggaaccacttattttgtgtccttttgactttcttcttacctcactgct
cttacaagatcttcatgcaaactaattagaccgaatagtgtgtgtgtgtg
tgtgtgtgtgtgttgtg
gaattccagatgttactaatgtctgtccaccttctccttaactctacatt
tgtgcaatagcttgttcatgctttcatgtttagttttacagtacctaaag
taggcagctcataactgccagtgactaaagctcccaggaatctaatattg
ttttcttgtttctgaacttgaggtgggggtggggagaacgcacacacaaa
catgttgagagacacagacagagacagacatacagagtggcacagagaga
aacagagaaacagagagtcatagacacacagagagacacagagagagaca
gagacagagagaaagagagggaggagaagaagaggaaaaagaacaggcat
aaatataataaaaataaaacagaaaatattttaaagttatgtttggacct
cactccaggcaaataaagaaatgattcataaacatttctcctctcctggt
aaattatgtaacctaagaactttatcctatccttcaaagctatgtgtctt
tcctgtctgtcctctgatacaatatttttcttttcttttatttccccttt
tcttttctcttttttccttttcttctcttttattttctttttggtaaggt
agatagtgcagaaaatttcttgtaacagtttatttagatatatcagttag
agtcttattttaattcctcaagtgcagggtactttaactaaaagaataac
ttttgttgcacactttttttgaatggactaactaatgatatataaagcag
ggctagagacgtagctcagtcatcaaagaactttctgtgttcagtcccta
tcgtacgtgcaaccattcacaggtagtggtgggaaaagctggtgagacag
agccagaggatatctagagttcactagtcagtcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_83345113_83345666
seq2: B6Ng01-078O11.b_407_959 (reverse)

seq1  CACACACACACACACACACACACACACACACTATTCGGTCTAATTAGTTT  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CACA-ACACACACACACACACACACACACACTATTCGGTCTAATTAGTTT  49

seq1  GCATGAAGATCTTGTAAGAGCAGTGAGGTAAGAAAGAAAGTCAAAAGGAC  100
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCATGAAGATCTTGTAAGAGCAGTGAGGTAAG-AAGAAAGTCAAAAGGAC  98

seq1  AC-AAATAAGTGGTTCCTGATTGAAGTAGCGCATTACAAGAAGAAATCTT  149
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATAAGTGGTTCCTGATTGAAGTAGCGCATTACAAGAAGAAATCTT  148

seq1  AAAGAACCCCCCCCCAAAGAAAACTAGAAAAGATTAACATTTTTAAGCAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACCCCCCCCCAAAGAAAACTAGAAAAGATTAACATTTTTAAGCAA  198

seq1  AGTGGCAGAATAGAAAAATTAAGTACAAAATTTAGTAGCCTTTTTATGTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCAGAATAGAAAAATTAAGTACAAAATTTAGTAGCCTTTTTATGTA  248

seq1  CTAATCTAAAAAGAGCATAATGGAAATACTTTCATTTATAGTAGCCTCAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCTAAAAAGAGCATAATGGAAATACTTTCATTTATAGTAGCCTCAC  298

seq1  AAAATAACCGGGAATAAGCCTGAACAAGGAGTTGAAATACAGTGAAACAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAACCGGGAATAAGCCTGAACAAGGAGTTGAAATACAGTGAAACAA  348

seq1  TTTAATTTTTGAAGAAAGAAGTTGAAGAAGTCATAGAAGATGGAAAGATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTTGAAGAAAGAAGTTGAAGAAGTCATAGAAGATGGAAAGATC  398

seq1  TCTTACACTCATGTGTTGGAAGACTTAACATTGCGAAAATATTTGACCTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACACTCATGTGTTGGAAGACTTAACATTGCGAAAATATTTGACCTA  448

seq1  CAAAAAGAATAGAATGGATTCAATTCAATTCCAATTAAAATTTCACAACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGAATAGAATGGATTCAATTCAATTCCAATTAAAATTTCACAACA  498

seq1  TTCTTCAGAGAAATAGAGCAAAATATTTTAACCTTCATTTGGAAGCTTGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAGAGAAATAGAGCAAAATATTTTAACCTTCATTTGGAAGCTTGG  548

seq1  AAACC  554
      |||||
seq2  AAACC  553

seq1: chr13_83185893_83186776
seq2: B6Ng01-078O11.g_71_955

seq1  GAATTCCAGATGTTACTAATGTCTGTCCACCTTCTCCTTAACTCTACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATGTTACTAATGTCTGTCCACCTTCTCCTTAACTCTACATT  50

seq1  TGTGCAATAGCTTGTTCATGCTTTCATGTTTAGTTTTACAGTACCTAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAATAGCTTGTTCATGCTTTCATGTTTAGTTTTACAGTACCTAAAG  100

seq1  TAGGCAGCTCATAACTGCCAGTGACTAAAGCTCCCAGGAATCTAATATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAGCTCATAACTGCCAGTGACTAAAGCTCCCAGGAATCTAATATTG  150

seq1  TTTTCTTGTTTCTGAACTTGAGGTGGGGGTGGGGAGAACGCACACACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTGTTTCTGAACTTGAGGTGGGGGTGGGGAGAACGCACACACAAA  200

seq1  CATGTTGAGAGACACAGACAGAGACAGACATACAGAGTGGCACAGAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGAGAGACACAGACAGAGACAGACATACAGAGTGGCACAGAGAGA  250

seq1  AACAGAGAAACAGAGAGTCATAGACACACAGAGAGACACAGAGAGAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGAAACAGAGAGTCATAGACACACAGAGAGACACAGAGAGAGACA  300

seq1  GAGACAGAGAGAAAGAGAGGGAGGAGAAGAAGAGGAAAAAGAACAGGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGAGAGAAAGAGAGGGAGGAGAAGAAGAGGAAAAAGAACAGGCAT  350

seq1  AAATATAATAAAAATAAAACAGAAAATATTTTAAAGTTATGTTTGGACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAATAAAAATAAAACAGAAAATATTTTAAAGTTATGTTTGGACCT  400

seq1  CACTCCAGGCAAATAAAGAAATGATTCATAAACATTTCTCCTCTCCTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCAGGCAAATAAAGAAATGATTCATAAACATTTCTCCTCTCCTGGT  450

seq1  AAATTATGTAACCTAAGAACTTTATCCTATCCTTCAAAGCTATGTGTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATGTAACCTAAGAACTTTATCCTATCCTTCAAAGCTATGTGTCTT  500

seq1  TCCTGTCTGTCCTCTGATACAATATTTTTCTTTTCTTTTATTTCCCCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCTGTCCTCTGATACAATATTTTTCTTTTCTTTTATTTCCCCTTT  550

seq1  TCTTTTCTCTTTTTTCCTTTTCTTCTCTTTTATTTTCTTTTTGGTAAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTCTTTTTTCCTTTTCTTCTCTTTTATTTTCTTTTTGGTAAGGT  600

seq1  AGATAGTGCAGAAAATTTCTTGTAACAGTTTATTTAGATATATCAGTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGTGCAGAAAATTTCTTGTAACAGTTTATTTAGATATATCAGTTAG  650

seq1  AGTCTTATTTTAATTCCTCAAGTGCA-GGTACTTTAACTAAAAGAATAAC  699
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGTCTTATTTTAATTCCTCAAGTGCAGGGTACTTTAACTAAAAGAATAAC  700

seq1  TTTTGTTGCACAC-TTTTTTGAATGGACTAACTAATGATATATAAAGCAG  748
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGCACACTTTTTTTGAATGGACTAACTAATGATATATAAAGCAG  750

seq1  GGCTAGAGACGTAGCTCAGTCATCAAAGAACTTTCTGTGTTCAGTCCCTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGAGACGTAGCTCAGTCATCAAAGAACTTTCTGTGTTCAGTCCCTA  800

seq1  TCGTACGTGCAACCATTCACAGGTAGTGGTGGGAAAAGCTGGTGAGACAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTACGTGCAACCATTCACAGGTAGTGGTGGGAAAAGCTGGTGAGACAG  850

seq1  AGCCAGAGGAATATCTAGAGTTCACTAGTCAGTCAT  884
      ||||||||| ||||||||||||||||||||||||||
seq2  AGCCAGAGG-ATATCTAGAGTTCACTAGTCAGTCAT  885