BAC Information

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BAC

Clone NameB6Ng01-078P12
Chromosome13 (Build37)
Map Location 80,111,011 - 80,272,327
singlet/doubletdoublet
Overlap geneLOC382780
Upstream geneLOC666925
Downstream geneEG666933, Arrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078P12.bB6Ng01-078P12.g
ACCDH894521DH894522
length1,0821,135
definitionDH894521|Mus musculus domesticus DNA, BAC clone: B6Ng01-078P12, 5' end.DH894522|Mus musculus domesticus DNA, BAC clone: B6Ng01-078P12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,111,011 - 80,111,604)(80,271,187 - 80,272,327)
sequence
gaattctcaactgaggaatatcaaatggctaagaaacacctcactaaata
ttcagcatccttagtcatcagtgagatgcaaatcaaaacagccctgggat
tccacctcacaccagtcagaatgactaagatcaaaaactcaggtgacagc
agatgctggtgaggatgtggagaaagagcctcctgattgctggtgggatt
gcaagctggtacaaccactctggaaatcagtttggtgggtgctcagaaaa
ttgaacatgatactaattgaggatccagcaataccactcctgggcatata
cccagaagatgctccaacatttaataaggacacatgctccactatgttga
tagcagccttatttataatagccagaagctggaaagaacccagatgtccc
tcaacagaggaatggatacagaaaatgtggtacatttacacatttagcct
gagctgtctcctgagaggctctggcagagcctgacaaatacagaggcaga
tgcttaccgccaaccattggactgagaatggtgtcccatttgggagaatt
agagaaaatacagaaggagctgaaggggtttgcaaccccataggaagaac
accaatatcaattaagcagaccccctcagaactcctagggactaaaccac
caaccaaagagtgcacatgaacggacccatggctccagctgcatatgtag
gagaagatggccttgtcagacatcagtgagaagaaaggcccttggtcctg
gcaaggctcgatgccccactgtaggggaatgccagggctgggaggcttca
ttgggtgagtgggtagctgagcacattcctagaagcaggggagagaggat
aggaaggggtgattcctttggggagggcactgggaatgggataacatttg
aaatgtaaataaagaaatatcattaataataattctctcttgagcaagtt
aaagcattcttctttatgacccatttagtataaccatataagtcttcatt
catctctgtacaggatgacaccaaggatatttacccttcctcaatattct
catgaagtttctagttcttttaggcgttcttc
gaattctcttttctaccagcatttcctgcttatataatcctagaaaggga
tcttgtaaattttgtataatttgggaacttactgatatttgtccattatt
tactttttgaccactgtaaactatatttacttctcatgtcataagtagcc
tcattctaagatgaaagatttccattcagacaaaatcaagaattagtacc
acaatctatatcatgttgtgaaatgtaacatggagagaataaccatattt
agcccaaaatattaatctataattattttcaattaataattcctaacaaa
attgttaatcataataatgttgttaaatatattttaattattattttcac
aaggaagttataaccaagaaaccttgatttgaataataaaaaatttcaca
gaagatttgtatatcttttcattcaataatataagtgaatattggatctt
ttggagattagatttctttaaaaatattttaattaattttaattatgtgt
actcatttgtgtccatgtctgagtattttcctaaagtagaggggtccata
tagctcaaaagtatcagattccctggacctgaagttacagaacattagtg
acctgccagttgtgggtattaggaatctaattcatatcctgcaaacagca
gcccacctacatagtcagttagtactatctctccagcctcatgttctatt
gtttaggattttttacaattctttattattttattgctactactactact
actactactactactactactactactactactattactactactactac
tattatatctatttcctcatcccattcctcctctcctgtttcccagagga
tgtctacagccctaccacccactccaccagccttcccccatcccaccctg
acaggcctccctactctctggggcctcaagtctcttcatggttaggtgcc
tcttctctcactgagaccagaccagcagttgtatgtgtgggggtctcata
tcatctagtgtggtgtatgctgcctgatggtggctcagtgtcctaagaga
tttctgaggtctaggttagtgatactgctggatctccctatggggttagt
ttgatcaaaaatcaacctttccaaccttaaagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_80111011_80111604
seq2: B6Ng01-078P12.b_548_1128

seq1  GCTTACCGCCAACCATTGGACTGAGAATGGTGTCCCATTTGGGAGAATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACCGCCAACCATTGGACTGAGAATGGTGTCCCATTTGGGAGAATTA  50

seq1  GAGAAAATACAGAAGGAGCTGAAGGGGTTTGCAACCCCATAGGAAGAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAATACAGAAGGAGCTGAAGGGGTTTGCAACCCCATAGGAAGAACA  100

seq1  CCAATATCAATTAAGCAGACCCCCTCAGAACTCCTAGGGACTAAACCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATCAATTAAGCAGACCCCCTCAGAACTCCTAGGGACTAAACCACC  150

seq1  AACCAAAGAGTGCACATGAACGGACCCATGGCTCCAGCTGCATATGTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAGAGTGCACATGAACGGACCCATGGCTCCAGCTGCATATGTAGG  200

seq1  AGAAGATGGCCTTGTCAGACATCAGTGAGAAGAAAGGCCCTTGGTCCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATGGCCTTGTCAGACATCAGTGAGAAGAAAGGCCCTTGGTCCTGG  250

seq1  CAAGGCTCGATGCCCCACTGTAGGGGAATGCCAGGGCTGGGAGGCTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTCGATGCCCCACTGTAGGGGAATGCCAGGGCTGGGAGGCTTCAT  300

seq1  TGGGTGAGTGGGTAGCTGAGCACATTCCTAGAAGCAGGGGGAGAGAGGAT  350
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGGGTGAGTGGGTAGCTGAGCACATTCCTAGAAGCA-GGGGAGAGAGGAT  349

seq1  AGG-AGGGGTGATTTCCTTGGGGAGGGCACTGGGAATGGGGATAACATTT  399
      ||| |||||||||| | |||||||||||||||||||| ||||||||||||
seq2  AGGAAGGGGTGATTCCTTTGGGGAGGGCACTGGGAAT-GGGATAACATTT  398

seq1  GAAATGTAAATAAAAGAAATATTCATTAAAAAAAATTCTCCTCTTTGAGC  449
      ||||||||||| ||||||||| ||||||| || |||||| ||| ||||||
seq2  GAAATGTAAAT-AAAGAAATA-TCATTAATAATAATTCT-CTC-TTGAGC  444

seq1  AAGTTAAAGGCAATCTTTTTTATGAACCAATTTTAGTAATAACCAATCAT  499
      |||||||| ||| |||| ||||||| |||  |||||| |||||||   ||
seq2  AAGTTAAA-GCATTCTTCTTTATGACCCA--TTTAGT-ATAACCA--TAT  488

seq1  AAGTCTTCATTCATCACTTGTACAGGATGACACCAAGAATATTTACCTTT  549
      ||||||||||||||| | ||||||||||||||||||| ||||||||| ||
seq2  AAGTCTTCATTCATCTC-TGTACAGGATGACACCAAGGATATTTACCCTT  537

seq1  CCTCTATTATTCTCATGAAGTTTTCTAGTTC-TTCAGGCGGTCTTC  594
      |||| | ||||||||||||| |||||||||| || ||||| |||||
seq2  CCTC-AATATTCTCATGAAG-TTTCTAGTTCTTTTAGGCGTTCTTC  581

seq1: chr13_80271187_80272327
seq2: B6Ng01-078P12.g_71_1205 (reverse)

seq1  TTTCTTTTAAAGTTGGAAAAGTTGATTTTTGATTTTAAAAACTAAACACC  50
      |||| ||||| |||||||| |||||||||||||     ||||| ||| ||
seq2  TTTC-TTTAAGGTTGGAAAGGTTGATTTTTGAT----CAAACT-AACCCC  44

seq1  ATAGGAAGA-CCAGCAGTATCAACTAACCTAGACCTCAGAAATCTCTTA-  98
      ||||| ||| ||||||||||| ||||||||||||||||||||||||||| 
seq2  ATAGGGAGATCCAGCAGTATC-ACTAACCTAGACCTCAGAAATCTCTTAG  93

seq1  GACACTGAGCCACCAATCAGGCAGCATACA-CACACTAGATGATATGAGA  147
      |||||||||||||| ||||||||||||||| |||||||||||||||||||
seq2  GACACTGAGCCACC-ATCAGGCAGCATACACCACACTAGATGATATGAGA  142

seq1  CCCCCAACACATACAACTGCTGGTCTGGTCTCAGTGAGAGAAGAGGCACC  197
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCC-ACACATACAACTGCTGGTCTGGTCTCAGTGAGAGAAGAGGCACC  191

seq1  TAACCATGGAGAGACTTGAGGCCCCAGAGAGTAGGGAGGCCTGTCAGGGT  247
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATGAAGAGACTTGAGGCCCCAGAGAGTAGGGAGGCCTGTCAGGGT  241

seq1  GGGATGGGGGAAGGCTGGTGGAGTGGGTGGTAGGGCTGTAGACATCCTCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGGGGAAGGCTGGTGGAGTGGGTGGTAGGGCTGTAGACATCCTCT  291

seq1  TGGAAACAGGAGAGGAGGAATGGGATGAGGAAATAGATATAATAGTAGTA  347
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACAGGAGAGGAGGAATGGGATGAGGAAATAGATATAATAGTAGTA  341

seq1  GTAGTAGTAATAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTAGTAATAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT  391

seq1  AGTAGTAGCAATAAAATAATAAAGAATTGTAAAAAATCCTAAACAATAGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTAGCAATAAAATAATAAAGAATTGTAAAAAATCCTAAACAATAGA  441

seq1  ACATGAGGCTGGAGAGATAGTACTAACTGACTATGTAGGTGGGCTGCTGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGGCTGGAGAGATAGTACTAACTGACTATGTAGGTGGGCTGCTGT  491

seq1  TTGCAGGATATGAATTAGATTCCTAATACCCACAACTGGCAGGTCACTAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGATATGAATTAGATTCCTAATACCCACAACTGGCAGGTCACTAA  541

seq1  TGTTCTGTAACTTCAGGTCCAGGGAATCTGATACTTTTGAGCTATATGGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGTAACTTCAGGTCCAGGGAATCTGATACTTTTGAGCTATATGGA  591

seq1  CCCCTCTACTTTAGGAAAATACTCAGACATGGACACAAATGAGTACACAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTACTTTAGGAAAATACTCAGACATGGACACAAATGAGTACACAT  641

seq1  AATTAAAATTAATTAAAATATTTTTAAAGAAATCTAATCTCCAAAAGATC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAATTAATTAAAATATTTTTAAAGAAATCTAATCTCCAAAAGATC  691

seq1  CAATATTCACTTATATTATTGAATGAAAAGATATACAAATCTTCTGTGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTCACTTATATTATTGAATGAAAAGATATACAAATCTTCTGTGAA  741

seq1  ATTTTTTATTATTCAAATCAAGGTTTCTTGGTTATAACTTCCTTGTGAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTATTATTCAAATCAAGGTTTCTTGGTTATAACTTCCTTGTGAAA  791

seq1  ATAATAATTAAAATATATTTAACAACATTATTATGATTAACAATTTTGTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATTAAAATATATTTAACAACATTATTATGATTAACAATTTTGTT  841

seq1  AGGAATTATTAATTGAAAATAATTATAGATTAATATTTTGGGCTAAATAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTATTAATTGAAAATAATTATAGATTAATATTTTGGGCTAAATAT  891

seq1  GGTTATTCTCTCCATGTTACATTTCACAACATGATATAGATTGTGGTACT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTCTCTCCATGTTACATTTCACAACATGATATAGATTGTGGTACT  941

seq1  AATTCTTGATTTTGTCTGAATGGAAATCTTTCATCTTAGAATGAGGCTAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTGATTTTGTCTGAATGGAAATCTTTCATCTTAGAATGAGGCTAC  991

seq1  TTATGACATGAGAAGTAAATATAGTTTACAGTGGTCAAAAAGTAAATAAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGACATGAGAAGTAAATATAGTTTACAGTGGTCAAAAAGTAAATAAT  1041

seq1  GGACAAATATCAGTAAGTTCCCAAATTATACAAAATTTACAAGATCCCTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAATATCAGTAAGTTCCCAAATTATACAAAATTTACAAGATCCCTT  1091

seq1  TCTAGGATTATATAAGCAGGAAATGCTGGTAGAAAAGAGAATTC  1141
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGATTATATAAGCAGGAAATGCTGGTAGAAAAGAGAATTC  1135