BAC Information

Click to search

BAC

Clone NameB6Ng01-079F10
Chromosome13 (Build37)
Map Location 60,186,980 - 60,343,345
singlet/doubletdoublet
Overlap geneLOC100041267, Gas1, EG328264
Upstream geneNtrk2, LOC100041533, Agtpbp1, Mak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6
Downstream geneDapk1, LOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa, Ctsj, Ctsq, Ctsr, Cts6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079F10.bB6Ng01-079F10.g
ACCDH894776DH894777
length4961,116
definitionDH894776|Mus musculus domesticus DNA, BAC clone: B6Ng01-079F10, 5' end.DH894777|Mus musculus domesticus DNA, BAC clone: B6Ng01-079F10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,342,844 - 60,343,345)(60,186,980 - 60,188,105)
sequence
agaattaatatatattaaacattcatatcttctgacttgtgtgttcacac
atatacctgattatgaggacttagttgtcagcaggtgacacagaaatggt
gagtagagccagtggtctataccctcacaactgcggttataacagtctta
gaaagcctactctatttcattagtggatatacctgttaatcacttacagt
gacaaatcactaatgtataaggtaaactaaacttgattacgtatacagag
tgagataactgtctaagggggttggtaccaccgaggattgcagacatcca
tgggagtcttgaagcatctcccttgcagttaagtatatggaggtggggtc
ggggacagaggaatggagagggagaggagggtggctatttctagagaaag
agaattatatatatatatatatacacacacatatatatatacatatacac
acatgtatatatgtatatatgtgtatgtgtgtatgtgtgtatgtat
gaattcctgtctagattgaggcttgtataagctgtgaaaagagatgtatt
tggaattttcaacagatttcaaatgctgtgatggctgaatgcctcacttt
catggggaaaagttccagaatgtttggcctaagacctggcatgccttttg
cttacggtaaagacagccctaggttagttgtatctggctgggtctctgtc
cctgtctgcagacactgggtgccatgtatcgattcctttcctcccagtta
ggatctgacctcaatagcagaagagctggaccttccctccccagctgtga
agtgtcactatacagaccaatttactaatgtttagatattgcttctgact
atattttggactcccctcctagatgcaccggaataattatagctttaaaa
aattatttccttatgttacatttattttgtgtgcgtgtgtgtgtgttggt
gagtgtggtacatccatggcgaggtctgaggatggtgtgactctctcctc
caccctacggggccccaggatagaactctagtggactggcttgccaagca
tctcagcagtgctaatgacggcttcgttgtttaagaattctctagcgtct
gaagatatagtggctctaaggatcctgcctctgaaaagcctggacgacat
ttcagatcacataacctgctgtttctccatttccacacctggagaaacag
aatcacaggagttagtacacaagtcagggtcatctttctggtctggcaat
accatgagatacctgtcgaggaacttgggtgtgcactcagctaatgtcgc
caaacaacatgggtgctactttgtgctcccagctcccataggcctttact
ttcctgcgacgcattcctcccaaacccactttctctcacccaaagcaacc
cttgctcatcaataaagaaacctgagtacaaaaatctgaaactcaattac
gacttcactccaactgaaacggcacactgtccccaaattcaggcgggaga
tagactctagattatgatgttttaattgtgattgaggagagtctccagaa
gacaaatctgtgttttctgttttgatgacccttctcatcactgagaagca
tgaggggtgtggcagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_60342844_60343345
seq2: B6Ng01-079F10.b_45_546 (reverse)

seq1  ATACATACACACATACACACATACACATATATACATATATACATGTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACACACATACACACATACACATATATACATATATACATGTGTGT  50

seq1  ATATGTATATATATATGTGTGTGTATATATATATATATATAATTCTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATATATATATGTGTGTGTATATATATATATATATAATTCTCTTT  100

seq1  CTCTAGAAATAGCCACCCTCCTCTCCCTCTCCATTCCTCTGTCCCCGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAAATAGCCACCCTCCTCTCCCTCTCCATTCCTCTGTCCCCGACC  150

seq1  CCACCTCCATATACTTAACTGCAAGGGAGATGCTTCAAGACTCCCATGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCCATATACTTAACTGCAAGGGAGATGCTTCAAGACTCCCATGGA  200

seq1  TGTCTGCAATCCTCGGTGGTACCAACCCCCTTAGACAGTTATCTCACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCAATCCTCGGTGGTACCAACCCCCTTAGACAGTTATCTCACTCT  250

seq1  GTATACGTAATCAAGTTTAGTTTACCTTATACATTAGTGATTTGTCACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACGTAATCAAGTTTAGTTTACCTTATACATTAGTGATTTGTCACTG  300

seq1  TAAGTGATTAACAGGTATATCCACTAATGAAATAGAGTAGGCTTTCTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGATTAACAGGTATATCCACTAATGAAATAGAGTAGGCTTTCTAAG  350

seq1  ACTGTTATAACCGCAGTTGTGAGGGTATAGACCACTGGCTCTACTCACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTATAACCGCAGTTGTGAGGGTATAGACCACTGGCTCTACTCACCA  400

seq1  TTTCTGTGTCACCTGCTGACAACTAAGTCCTCATAATCAGGTATATGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGTCACCTGCTGACAACTAAGTCCTCATAATCAGGTATATGTGT  450

seq1  GAACACACAAGTCAGAAGATATGAATGTTTAATATATATTAATTCTGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACACAAGTCAGAAGATATGAATGTTTAATATATATTAATTCTGAAT  500

seq1  TC  502
      ||
seq2  TC  502

seq1: chr13_60186980_60188105
seq2: B6Ng01-079F10.g_70_1185

seq1  GAATTCCTGTCTAGATTGAGGCTTGTATAAGCTGTGAAAAGAGATGTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTCTAGATTGAGGCTTGTATAAGCTGTGAAAAGAGATGTATT  50

seq1  TGGAATTTTCAACAGATTTCAAATGCTGTGATGGCTGAATGCCTCACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTTTCAACAGATTTCAAATGCTGTGATGGCTGAATGCCTCACTTT  100

seq1  CATGGGGAAAAGTTCCAGAATGTTTGGCCTAAGACCTGGCATGCCTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGGAAAAGTTCCAGAATGTTTGGCCTAAGACCTGGCATGCCTTTTG  150

seq1  CTTACGGTAAAGACAGCCCTAGGTTAGTTGTATCTGGCTGGGTCTCTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACGGTAAAGACAGCCCTAGGTTAGTTGTATCTGGCTGGGTCTCTGTC  200

seq1  CCTGTCTGCAGACACTGGGTGCCATGTATCGATTCCTTTCCTCCCAGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTGCAGACACTGGGTGCCATGTATCGATTCCTTTCCTCCCAGTTA  250

seq1  GGATCTGACCTCAATAGCAGAAGAGCTGGACCTTCCCTCCCCAGCTGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTGACCTCAATAGCAGAAGAGCTGGACCTTCCCTCCCCAGCTGTGA  300

seq1  AGTGTCACTATACAGACCAATTTACTAATGTTTAGATATTGCTTCTGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCACTATACAGACCAATTTACTAATGTTTAGATATTGCTTCTGACT  350

seq1  ATATTTTGGACTCCCCTCCTAGATGCACCGGAATAATTATAGCTTTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGGACTCCCCTCCTAGATGCACCGGAATAATTATAGCTTTAAAA  400

seq1  AATTATTTCCTTATGTTACATTTATTTTGTGTGCGTGTGTGTGTGTTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTCCTTATGTTACATTTATTTTGTGTGCGTGTGTGTGTGTTGGT  450

seq1  GAGTGTGGTACATCCATGGCGAGGTCTGAGGATGGTGTGACTCTCTCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGGTACATCCATGGCGAGGTCTGAGGATGGTGTGACTCTCTCCTC  500

seq1  CACCCTACGGGGCCCCAGGATAGAACTCTAGTGGACTGGCTTGCCAAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTACGGGGCCCCAGGATAGAACTCTAGTGGACTGGCTTGCCAAGCA  550

seq1  TCTCAGCAGTGCTAATGACGGCTTCGTTGTTTAAGAATTCTCTAGCGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCAGTGCTAATGACGGCTTCGTTGTTTAAGAATTCTCTAGCGTCT  600

seq1  GAAGATATAGTGGCTCTAAGGATCCTGCCTCTGAAAAGCCTGGACGACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATATAGTGGCTCTAAGGATCCTGCCTCTGAAAAGCCTGGACGACAT  650

seq1  TTCAGATCACATAACCTGCTGTTTCTCCATTTCCACACCTGGAGAAACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATCACATAACCTGCTGTTTCTCCATTTCCACACCTGGAGAAACAG  700

seq1  AATCACAGGAGTTAGTACACAAGTCAGGGTCATC-TTCTGGTCTGGCAAT  749
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AATCACAGGAGTTAGTACACAAGTCAGGGTCATCTTTCTGGTCTGGCAAT  750

seq1  ACCATGAGATACCTGTCGAGGAACTTGGTTGTGCACTCAGCTAATGTCGC  799
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACCATGAGATACCTGTCGAGGAACTTGGGTGTGCACTCAGCTAATGTCGC  800

seq1  CAAACAACATGGGTGCTACTTTGTGCTCCCAGCTCCCATAGGCCTTTACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAACATGGGTGCTACTTTGTGCTCCCAGCTCCCATAGGCCTTTACT  850

seq1  TTCCTGCGACGCATTCCTCCCAAACCCACTTTCTCTCACCCAAAGCAACC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCGACGCATTCCTCCCAAACCCACTTTCTCTCACCCAAAGCAACC  900

seq1  CTTGCTCATCAATAAAGAAACCTGAGTACAAAAATCTGAAACTCAA-TAC  948
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTTGCTCATCAATAAAGAAACCTGAGTACAAAAATCTGAAACTCAATTAC  950

seq1  GACTTTCACCCCAACTGAAACGGCACACTGTCCCCAAATTCAGGGCGGGA  998
      ||| ||||| |||||||||||||||||||||||||||||||| |||||||
seq2  GAC-TTCACTCCAACTGAAACGGCACACTGTCCCCAAATTCA-GGCGGGA  998

seq1  GAGAGACTTCTAGGATTATGATGGTTTAAATGTGAGTGAGGAGAGGATCA  1048
      || |||| |||| |||||||||| ||||| ||||| |||||||||  || 
seq2  GATAGAC-TCTA-GATTATGATGTTTTAATTGTGATTGAGGAGAG--TCT  1044

seq1  CCAGAAAGACAAATCTTGTGTTTTCTGTTTTGATGGACCCATCTCATCAC  1098
      |||| |||||||||| |||||||||||||||||| ||||| |||||||||
seq2  CCAG-AAGACAAATC-TGTGTTTTCTGTTTTGAT-GACCCTTCTCATCAC  1091

seq1  TGAGGAAGCCATGATGGGGTGTGGCAGG  1126
      ||| |||| ||||| |||||||||||||
seq2  TGA-GAAG-CATGA-GGGGTGTGGCAGG  1116