BAC Information

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BAC

Clone NameB6Ng01-079J14
Chromosome13 (Build37)
Map Location 76,018,269 - 76,163,173
singlet/doubletdoublet
Overlap geneRhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008
Upstream genePcsk1, LOC672443, LOC666764, LOC100042606, LOC100042986, Ell2, LOC666786, Glrx
Downstream geneGpr150, Arsk, AK129128, Gm276, Mctp1, LOC666603, EG666607
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079J14.bB6Ng01-079J14.g
ACCDH894960DH894961
length1,0341,101
definitionDH894960|Mus musculus domesticus DNA, BAC clone: B6Ng01-079J14, 5' end.DH894961|Mus musculus domesticus DNA, BAC clone: B6Ng01-079J14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,018,269 - 76,019,310)(76,162,064 - 76,163,173)
sequence
gaattcaaattggcaacgcaatttgacttacaattttaggttttaaacta
tttcaagataaatagaacatcatttgaaaactaggagcatagcttaaaca
aactggatggtctaccatttgaattaagcagatgaattaagactgactaa
aaatatcaagtggacattagacagggtggatttcataagcagggcttgaa
attttaacagagctttctgttgataatgccacaagataatgttgaaaatg
taacatcagcttgagtgcctttgagtatagtgtgtgtgtgtgtgtgcacg
cgcgcacacgcgtgcatcagtgtatgcacacatgtgtgtgccagaggttg
acatcaggattcaacttctttcctatttatttattattattttgaaacga
gctctcccactgaacctggaactctgttttggctagactgcctaaacagc
aagcctctagaatctagctgtctttactcttaagcactgggattacaagc
atggtgtagatgtggtgtgtaaagatatgcctggttgattttagatccat
ttaaagattagaatttacttttgaaaactattatactttcagcaaaggga
aaaagaaattctatttcacaaccctttaactattttggtgttttaaaact
tacgttataaaaatgtatataatacctaactatggttacctgttttttgt
tgttttgtttttttcagtgtgtgatatgtgtgtgcacctgtggaggccag
cagactgcttcagatcccccaagagaaagttataggtagtcatcacaggt
tctggggatcaaatcaacgtcctcttgaggaacagcttatgacactgagt
catctctccagcccacagttacctgtttaagcagtatattattgcaaaca
ctaacagactataattcagttgtttatattatagctggcaactgattgca
atgataatgcaagggtatagagatatactgtgttttttttttttggtttt
cgagacaggtttctcttgtggtagcctggctgtc
gaattcattcttttgactgtgagaaaatagttttcccttgctgagcctca
acaaagtcccaatatctctccctcttcatatggtattttaaatcttgagg
ggcagttgtgatattttcctttctagtgttaccagggaaatagaagatag
actgaaactgtccatgagagagggtgtccatcttcaatggcctccaagat
tgttaatccctttaacactctccctaagagctgaaactgaaatgatttaa
gagatgggttgaaattggagtatagaaggtttgagggatgatgctgggcc
ttggaaggtggtcatgagaactcaggtagttggaattaggttgcagcagg
agcatctgagtgtatatggactgtgaacagaaggagataaaattaagctt
gcagctgaatacacaggttgcaactataacatcactactaagagtctaac
agctacaactctttcccaccccaaaaaccctgagatccaactgcaaggct
gctcaccaaaaggagtgggcatctggctctcactcacatttagcttccag
gaagctgtgtgaaagtagatgaaaaatttaaaaacaagcaaacaaacaaa
cagacttagaactagaacacccagataccactttgggcatttctggcttc
tagtcaatacagaacaaagaacatacctgacgaagaacaagaatagaact
gtgtgttttcaaggtctctgcctggctgattcattaatttaatcttaaag
gaacccaaagaaacatggcatctaaatatagtcttggttctgaactgggt
ttcagaattagatgataggaaggaatcctagctaacttcctgattttatg
atgtagaaagtatctttgtgttcaggaactgcactctaaaccctagggac
tgatgaggcttcggaacgggaactctacctggaaaggttccaggcatgag
gaaactggaaacctaaggttctattacttcactacttctatacagcacat
gctactctaccactgttgttctaaaagtcagcgtactgaagacagctttc
tatagttcttatttagctgtgtctgtcttcaaggtcttgtctttttgtct
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_76018269_76019310
seq2: B6Ng01-079J14.b_45_1078

seq1  GAATTCAAATTGGCAACGCAATTTGACTTACAATTTTAGGTTTTAAACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATTGGCAACGCAATTTGACTTACAATTTTAGGTTTTAAACTA  50

seq1  TTTCAAGATAAATAGAACATCATTTGAAAACTAGGAGCATAGCTTAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGATAAATAGAACATCATTTGAAAACTAGGAGCATAGCTTAAACA  100

seq1  AACTGGATGGTCTACCATTTGAATTAAGCAGATGAATTAAGACTGACTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGATGGTCTACCATTTGAATTAAGCAGATGAATTAAGACTGACTAA  150

seq1  AAATATCAAGTGGACATTAGACAGGGTGGATTTCATAAGCAGGGCTTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCAAGTGGACATTAGACAGGGTGGATTTCATAAGCAGGGCTTGAA  200

seq1  ATTTTAACAGAGCTTTCTGTTGATAATGCCACAAGATAATGTTGAAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAACAGAGCTTTCTGTTGATAATGCCACAAGATAATGTTGAAAATG  250

seq1  TAACATCAGCTTGAGTGCCTTTGAGTATAGTGTGTGTGTGTGTGTGCACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATCAGCTTGAGTGCCTTTGAGTATAGTGTGTGTGTGTGTGTGCACG  300

seq1  CGCGCACACGCGTGCATCAGTGTATGCACACATGTGTGTGCCAGAGGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCACACGCGTGCATCAGTGTATGCACACATGTGTGTGCCAGAGGTTG  350

seq1  ACATCAGGATTCAACTTCTTTCCTATTTATTTATTATTATTTTGAAACGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGGATTCAACTTCTTTCCTATTTATTTATTATTATTTTGAAACGA  400

seq1  GCTCTCCCACTGAACCTGGAACTCTGTTTTGGCTAGACTGCCTAAACAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCCACTGAACCTGGAACTCTGTTTTGGCTAGACTGCCTAAACAGC  450

seq1  AAGCCTCTAGAATCTAGCTGTCTTTACTCTTAAGCACTGGGATTACAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTCTAGAATCTAGCTGTCTTTACTCTTAAGCACTGGGATTACAAGC  500

seq1  ATGGTGTAGATGTGGTGTGTAAAGATATGCCTGGTTGATTTTAGATCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTAGATGTGGTGTGTAAAGATATGCCTGGTTGATTTTAGATCCAT  550

seq1  TTAAAGATTAGAATTTACTTTTGAAAACTATTATACTTTCAGCAAAGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGATTAGAATTTACTTTTGAAAACTATTATACTTTCAGCAAAGGGA  600

seq1  AAAAGAAATTCTATTTCACAACCCTTTAACTATTTTGGTGTTTTAAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAATTCTATTTCACAACCCTTTAACTATTTTGGTGTTTTAAAACT  650

seq1  TACGTTATAAAAATGTATATAATACCTAACTATGGTTACCTGTTTTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTTATAAAAATGTATATAATACCTAACTATGGTTACCTGTTTTTTGT  700

seq1  TG-------TTTTTCAGTGTGTGATATGTGTGTGCACCTGTGGAGGCCAG  743
      ||       |||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTTTTCAGTGTGTGATATGTGTGTGCACCTGTGGAGGCCAG  750

seq1  CAGACTGCTTCAGATCCCCCAAGAGAAGGTTATAGGTAGTCATCACAGGT  793
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAGACTGCTTCAGATCCCCCAAGAGAAAGTTATAGGTAGTCATCACAGGT  800

seq1  TCTGGGGATCAAATCAACGTCCTCTTGAGGAACAGCTATTGACACTGAGT  843
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  TCTGGGGATCAAATCAACGTCCTCTTGAGGAACAGCTTATGACACTGAGT  850

seq1  CATCTCTCCAGCCCACAGTTACCTGTTTTAAGCAGTATATTTATGCAAAC  893
      ||||||||||||||||||||||||| |||||||||||||||  |||||||
seq2  CATCTCTCCAGCCCACAGTTACCTG-TTTAAGCAGTATATTATTGCAAAC  899

seq1  ACTAACAGACTATAATTCAG-TGTTTATATAATAGCTGGCAACTGATTGC  942
      |||||||||||||||||||| ||||||||| |||||||||||||||||||
seq2  ACTAACAGACTATAATTCAGTTGTTTATATTATAGCTGGCAACTGATTGC  949

seq1  AAATGATAATGCAAGGGTATAGAAGATATAACTTTTTTTTTTTTTTTTTT  992
       ||||||||||||||||||||| |||||| ||| | ||||||||||||  
seq2  -AATGATAATGCAAGGGTATAG-AGATAT-ACTGTGTTTTTTTTTTTT--  994

seq1  TTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGT-GTAGCCCTGGCTGT  1041
              | ||||||||||| ||||||||| ||| |||| |||||||||
seq2  --------GGTTTTCGAGACA-GGTTTCTCT-TGTGGTAG-CCTGGCTGT  1033

seq1  C  1042
      |
seq2  C  1034

seq1: chr13_76162064_76163173
seq2: B6Ng01-079J14.g_70_1170 (reverse)

seq1  AAGACCAAAAAGACAAAGACCTTGGAGACCAGACACAGCTAAATTGAGAC  50
      |||| ||||||||| ||||||||| ||| |||||||||||||||    ||
seq2  AAGA-CAAAAAGAC-AAGACCTTGAAGA-CAGACACAGCTAAATAAGAAC  47

seq1  TATAGAAAGGCTGTCTTTCAGTACGCTGGACTTTTAG-ACAACAGTGGGT  99
      |||||||| |||||| ||||||||||| ||||||||| |||||||| |||
seq2  TATAGAAA-GCTGTC-TTCAGTACGCT-GACTTTTAGAACAACAGT-GGT  93

seq1  AGAGTAGCATGTGCTGTTATTAGAAGTAGTGATGTTAATAGAA-CTTAGG  148
      |||||||||||||||||   |||||||||||| | |||||||| ||||||
seq2  AGAGTAGCATGTGCTGT--ATAGAAGTAGTGAAG-TAATAGAACCTTAGG  140

seq1  TTTCCAGTTTCCTCCATGCCTGGAACCTTTCCAGGGTAGAGTTCCCGTTC  198
      ||||||||||||| ||||||||||||||||||| ||||||||||||||||
seq2  TTTCCAGTTTCCT-CATGCCTGGAACCTTTCCA-GGTAGAGTTCCCGTTC  188

seq1  CGAGGCCTCATCAGTCCCTAGGGTTTAGAGTGCAGTTCCTGAACACAAAG  248
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGCCTCATCAGTCCCTAGGGTTTAGAGTGCAGTTCCTGAACACAAAG  238

seq1  ATACTTTCTACATCATAAAATCAGGAAGTTAGCTAGGATTCCTTCCTATC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTCTACATCATAAAATCAGGAAGTTAGCTAGGATTCCTTCCTATC  288

seq1  ATCTAATTCTGAAACCCAGTTCAGAACCAAGACTATATTTAGATGCCATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATTCTGAAACCCAGTTCAGAACCAAGACTATATTTAGATGCCATG  338

seq1  TTTCTTTGGGTTCC-TTAAGATTAAATTAATGAATCAGCCAGGCAGAGAC  397
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGGGTTCCTTTAAGATTAAATTAATGAATCAGCCAGGCAGAGAC  388

seq1  CTTGAAAACACACAGTTCTATTCTTGTTCTTCGTCAGGTATGTTCTTTGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAACACACAGTTCTATTCTTGTTCTTCGTCAGGTATGTTCTTTGT  438

seq1  TCTGTATTGACTAGAAGCCAGAAATGCCCAAAGTGGTATCTGGGTGTTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATTGACTAGAAGCCAGAAATGCCCAAAGTGGTATCTGGGTGTTCT  488

seq1  AGTTCTAAGTCTGTTTGTTTGTTTGCTTGTTTTTAAATTTTTCATCTACT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTAAGTCTGTTTGTTTGTTTGCTTGTTTTTAAATTTTTCATCTACT  538

seq1  TTCACACAGCTTCCTGGAAGCTAAATGTGAGTGAGAGCCAGATGCCCACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACAGCTTCCTGGAAGCTAAATGTGAGTGAGAGCCAGATGCCCACT  588

seq1  CCTTTTGGTGAGCAGCCTTGCAGTTGGATCTCAGGGTTTTTGGGGTGGGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGGTGAGCAGCCTTGCAGTTGGATCTCAGGGTTTTTGGGGTGGGA  638

seq1  AAGAGTTGTAGCTGTTAGACTCTTAGTAGTGATGTTATAGTTGCAACCTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTGTAGCTGTTAGACTCTTAGTAGTGATGTTATAGTTGCAACCTG  688

seq1  TGTATTCAGCTGCAAGCTTAATTTTATCTCCTTCTGTTCACAGTCCATAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCAGCTGCAAGCTTAATTTTATCTCCTTCTGTTCACAGTCCATAT  738

seq1  ACACTCAGATGCTCCTGCTGCAACCTAATTCCAACTACCTGAGTTCTCAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCAGATGCTCCTGCTGCAACCTAATTCCAACTACCTGAGTTCTCAT  788

seq1  GACCACCTTCCAAGGCCCAGCATCATCCCTCAAACCTTCTATACTCCAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACCTTCCAAGGCCCAGCATCATCCCTCAAACCTTCTATACTCCAAT  838

seq1  TTCAACCCATCTCTTAAATCATTTCAGTTTCAGCTCTTAGGGAGAGTGTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACCCATCTCTTAAATCATTTCAGTTTCAGCTCTTAGGGAGAGTGTT  888

seq1  AAAGGGATTAACAATCTTGGAGGCCATTGAAGATGGACACCCTCTCTCAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGATTAACAATCTTGGAGGCCATTGAAGATGGACACCCTCTCTCAT  938

seq1  GGACAGTTTCAGTCTATCTTCTATTTCCCTGGTAACACTAGAAAGGAAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTTTCAGTCTATCTTCTATTTCCCTGGTAACACTAGAAAGGAAAA  988

seq1  TATCACAACTGCCCCTCAAGATTTAAAATACCATATGAAGAGGGAGAGAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAACTGCCCCTCAAGATTTAAAATACCATATGAAGAGGGAGAGAT  1038

seq1  ATTGGGACTTTGTTGAGGCTCAGCAAGGGAAAACTATTTTCTCACAGTCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGACTTTGTTGAGGCTCAGCAAGGGAAAACTATTTTCTCACAGTCA  1088

seq1  AAAGAATGAATTC  1110
      |||||||||||||
seq2  AAAGAATGAATTC  1101