BAC Information

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BAC

Clone NameB6Ng01-079K16
Chromosome13 (Build37)
Map Location 115,848,945 - 115,982,987
singlet/doubletdoublet
Overlap geneItga1, Pelo
Upstream geneArl15, A430090L17Rik, Ndufs4, LOC100040958, Fst, 4930467J12Rik, Mocs2, Itga2, LOC100040975
Downstream geneLOC100041023, LOC547402, LOC100041045, EG623174
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079K16.bB6Ng01-079K16.g
ACCDH895009DH895010
length1,1511,082
definitionDH895009|Mus musculus domesticus DNA, BAC clone: B6Ng01-079K16, 5' end.DH895010|Mus musculus domesticus DNA, BAC clone: B6Ng01-079K16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,848,945 - 115,850,110)(115,981,886 - 115,982,987)
sequence
gaattcatttcccagttggttttaaccatatatgaggaggaaatattctc
attattggactcctcaaaaatctgggtgaagttttagtaaaagaaattat
gaggaaaatgttcatgcttttcaaagtcaacatagacccattgctcttta
tacaaggacacaaaaatgaaagaaattgaaagtctggttgctattatttt
aatgcataacttagtcactatagtctcaatacttctagcagattgagagc
gagacaaaggactggcagaaacataagcaagcaagaccaggaaagggaca
tcctgaggttacttcaaaggcaaaggaaaagaacagcaacctggtagcaa
tctggccaagagagagtgttacagcatctgtcacttcacatggtcatctc
tgtatcactcagggacaaccaacaaggtgaacaaagcaagattcaaggac
taaaacactatgtctagctttcattattcctttaaagaaatgtcccttcc
cttaagggtaatgactaagagagttttccatcaaaacctgtacatagtct
gtttgcttttttcataccttagttttgtgcagttcggtgtagatggaata
ctgtttcttctggggtaaggaactgtgagctgcgttaagaaagacacttg
gatttataattttttaccctggaggaagtttatcaggaagtaggtcaaca
cttactgatgcttcctgacttctgatgcttcctgaccctctctgcacagc
tttattttaggaatgctaagcacgcaggaactatgcaaaagaaacatatc
atcactcaacttaggactttccaccatgctagaagtggctcgaacattta
tttccaaaacattgtgtcaaaaaaaatagtatggggctggagagatggct
cagcaggtagagcattgactgcacttctgcaggtcctgagttcaaatccc
agcaaccatatggtgctcacaaccacccataatgagatctgatgccctct
tctggtttgtctgacacagctacagtatgtcatttataataataaatgaa
tcttaaaaatagtgttgagatattagagttctacattatgagcacgatca
ctggtgccaacaaattaatgttagaaacatgtgatggtttggccaatttc
c
gaattcaccctcttcatcaaggtaaaatggggaagttttaaacaaaaatc
tatgtacacaaaaattcctacctacataggaaaaaggagaagatatttaa
aagtagcagcataggacaaaaatgcacacagaataaagacaaacttcatt
taaaaatattatttaatgaatttgaaacttaatgtataatttcctttttt
agtgttactcaatattttttccatttgctttattttacaacaacactaat
ttaatatatttaagtgtctaaaaaataagttatttttatttccctagtta
taaaaacatgggcccccacccccacccttactctgttcttcatgccatat
gcgaagaatgctaagagaagctgagttttgagttgtggctgggttttgtt
ctaattagtttagggctagcttgtgagtgttagtaggtttgataatgcag
gcaccctacagttcatgattacaataatatgcaaaagtctttccattaac
actgctcgatggtcagttcaatttaagaatcccctgtgctatggactctg
ccagttcctcaaaactttccccagtaaaataagctaatgtcagcatttta
ctgcactctcccactctttaatggggtcctcttcatgttaaagtgtctag
gatcccagaccactctcaaacaaaccacaagatactcaccccacaatact
ggttttctctcgactccctcaacaatattttgactaagcaggctgaattc
attcaactctcgtgttccacaattctagtggttattgtaacaatcagaag
acctagcaaacacaaaagtggatgctcacagtcagctattggatggatca
cagggccccaatggaggagctagagaaagtacccaaggagctaaagggat
ctgcaccctagagtgaacaacattatgaactaaccagtaccccgagctct
tgactctagctgcatatgtatcaaaagatgcctagtcgcatcactgaaag
agagcccatgacatgcaactgtatatgcccagtacaggaacgccaggcaa
aagtgggagtggtggtacgggagtggggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_115848945_115850110
seq2: B6Ng01-079K16.b_48_1198

seq1  GAATTCATTTCCCAGTTGGTTTTAACCATATATGAGGAGGAAATATTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCCCAGTTGGTTTTAACCATATATGAGGAGGAAATATTCTC  50

seq1  ATTATTGGACTCCTCAAAAATCTGGGTGAAGTTTTAGTAAAAGAAATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGGACTCCTCAAAAATCTGGGTGAAGTTTTAGTAAAAGAAATTAT  100

seq1  GAGGAAAATGTTCATGCTTTTCAAAGTCAACATAGACCCATTGCTCTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAATGTTCATGCTTTTCAAAGTCAACATAGACCCATTGCTCTTTA  150

seq1  TACAAGGACACAAAAATGAAAGAAATTGAAAGTCTGGTTGCTATTATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGGACACAAAAATGAAAGAAATTGAAAGTCTGGTTGCTATTATTTT  200

seq1  AATGCATAACTTAGTCACTATAGTCTCAATACTTCTAGCAGATTGAGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATAACTTAGTCACTATAGTCTCAATACTTCTAGCAGATTGAGAGC  250

seq1  GAGACAAAGGACTGGCAGAAACATAAGCAAGCAAGACCAGGAAAGGGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAAGGACTGGCAGAAACATAAGCAAGCAAGACCAGGAAAGGGACA  300

seq1  TCCTGAGGTTACTTCAAAGGCAAAGGAAAAGAACAGCAACCTGGTAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGGTTACTTCAAAGGCAAAGGAAAAGAACAGCAACCTGGTAGCAA  350

seq1  TCTGGCCAAGAGAGAGTGTTACAGCATCTGTCACTTCACATGGTCATCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCAAGAGAGAGTGTTACAGCATCTGTCACTTCACATGGTCATCTC  400

seq1  TGTATCACTCAGGGACAACCAACAAGGTGAACAAAGCAAGATTCAAGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCACTCAGGGACAACCAACAAGGTGAACAAAGCAAGATTCAAGGAC  450

seq1  TAAAACACTATGTCTAGCTTTCATTATTCCTTTAAAGAAATGTCCCTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACACTATGTCTAGCTTTCATTATTCCTTTAAAGAAATGTCCCTTCC  500

seq1  CTTAAGGGTAATGACTAAGAGAGTTTTCCATCAAAACCTGTACATAGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGGGTAATGACTAAGAGAGTTTTCCATCAAAACCTGTACATAGTCT  550

seq1  GTTTGCTTTTTTCATACCTTAGTTTTGTGCAGTTCGGTGTAGATGGAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTTTTTTCATACCTTAGTTTTGTGCAGTTCGGTGTAGATGGAATA  600

seq1  CTGTTTCTTCTGGGGTAAGGAACTGTGAGCTGCGTTAAGAAAGACACTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCTTCTGGGGTAAGGAACTGTGAGCTGCGTTAAGAAAGACACTTG  650

seq1  GATTTATAATTTTTTACCCTGGAGGAAGTTTATCAGGAAGTAGGTCAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATAATTTTTTACCCTGGAGGAAGTTTATCAGGAAGTAGGTCAACA  700

seq1  CTTACTGATGCTTCCTGACTTCTGATGCTTCCTGACCCTCTCTGCACAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGATGCTTCCTGACTTCTGATGCTTCCTGACCCTCTCTGCACAGC  750

seq1  TTTATTTTAGGAATGCTAAGCACGCAGGAACTATGCAAAAGAAACATATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTAGGAATGCTAAGCACGCAGGAACTATGCAAAAGAAACATATC  800

seq1  ATCACTCAACTTAGGACTTTCCACCATGCTAGAAGTGGCTCGAACATTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTCAACTTAGGACTTTCCACCATGCTAGAAGTGGCTCGAACATTTA  850

seq1  TTTCCAAAACATTGTGTCAAAAAAAATAGTATGGGGCTGGAGAGATGGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAAACATTGTGTCAAAAAAAATAGTATGGGGCTGGAGAGATGGCT  900

seq1  CAGCAGGTAAGAGCATTGACTGCACTTCTGCAGGTCCTGAGTTCAAATCC  950
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGT-AGAGCATTGACTGCACTTCTGCAGGTCCTGAGTTCAAATCC  949

seq1  CAGCAACCATATGGTGGCTCACAACCACCCATAATGAGATCTGATGCCCT  1000
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAGCAACCATATGGT-GCTCACAACCACCCATAATGAGATCTGATGCCCT  998

seq1  CTTCTGGTATGTCTGAACACAGCTACAGTATGTTCATTTATAATAATAAA  1050
      |||||||| |||||| |||||||||||||||| |||||||||||||||||
seq2  CTTCTGGTTTGTCTG-ACACAGCTACAGTATG-TCATTTATAATAATAAA  1046

seq1  TGAATCTTTAAAAAATAGTGTGAAGGAATATCAAGGAGTTTCTACAATTA  1100
      ||||||||  |||||||||||  ||  |||| |  ||| |||||| ||||
seq2  TGAATCTT--AAAAATAGTGTTGAG--ATATTA--GAG-TTCTAC-ATTA  1088

seq1  TGAGCACGATTCACTGGGTTGCAACAAAATTAATG-TAGAACAATGTGAA  1149
      ||||||||| |||||||  ||| |  ||||||||| |||||  ||||| |
seq2  TGAGCACGA-TCACTGG--TGCCAACAAATTAATGTTAGAAACATGTG-A  1134

seq1  TGTGTTGGGCAATTTCC  1166
      ||  |||| ||||||||
seq2  TGGTTTGGCCAATTTCC  1151

seq1: chr13_115981886_115982987
seq2: B6Ng01-079K16.g_69_1150 (reverse)

seq1  TCCCCCCCACTCCCGTACCCACCCACTCCCACTTTTTGGCCCTGGCGTTC  50
      |||||||||||||||||||   ||||||||||||||    ||||||||| 
seq2  TCCCCCCCACTCCCGTACC--ACCACTCCCACTTTT---GCCTGGCGTT-  44

seq1  CCCTGTACTGGGGCATATACAGTTTGCATGTCCAATGGGCCTCTCTTTCC  100
       |||||||| |||||||||||| |||||||||  ||||| |||||||| |
seq2  -CCTGTACT-GGGCATATACAG-TTGCATGTC--ATGGG-CTCTCTTT-C  87

seq1  AGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAG  150
      |||||||  |||||||| ||||||||||||||||||||||||||||||||
seq2  AGTGATG--CGACTAGG-CATCTTTTGATACATATGCAGCTAGAGTCAAG  134

seq1  AGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCACCTCTAGGGTTGCA  200
      |||| ||||||||||||||||||||||||||||||| |||||||| ||||
seq2  AGCT-CGGGGTACTGGTTAGTTCATAATGTTGTTCA-CTCTAGGG-TGCA  181

seq1  GATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCC  250
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATT-GGGGCCC  230

seq1  TGTGATCCATCCAATAGCTGACTGTGAGCATCCACTTTTGTGTTTGCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCCATCCAATAGCTGACTGTGAGCATCCACTTTTGTGTTTGCTAG  280

seq1  GTCTTCTGATTGTTACAATAACCACTAGAATTGTGGAACACGAGAGTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTGATTGTTACAATAACCACTAGAATTGTGGAACACGAGAGTTGA  330

seq1  ATGAATTCAGCCTGCTTAGTCAAAATATTGTTGAGGGAGTCGAGAGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTCAGCCTGCTTAGTCAAAATATTGTTGAGGGAGTCGAGAGAAAA  380

seq1  CCAGTATTGTGGGGTGAGTATCTTGTGGTTTGTTTGAGAGTGGTCTGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATTGTGGGGTGAGTATCTTGTGGTTTGTTTGAGAGTGGTCTGGGA  430

seq1  TCCTAGACACTTTAACATGAAGAGGACCCCATTAAAGAGTGGGAGAGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGACACTTTAACATGAAGAGGACCCCATTAAAGAGTGGGAGAGTGC  480

seq1  AGTAAAATGCTGACATTAGCTTATTTTACTGGGGAAAGTTTTGAGGAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAATGCTGACATTAGCTTATTTTACTGGGGAAAGTTTTGAGGAACT  530

seq1  GGCAGAGTCCATAGCACAGGGGATTCTTAAATTGAACTGACCATCGAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGTCCATAGCACAGGGGATTCTTAAATTGAACTGACCATCGAGCA  580

seq1  GTGTTAATGGAAAGACTTTTGCATATTATTGTAATCATGAACTGTAGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAATGGAAAGACTTTTGCATATTATTGTAATCATGAACTGTAGGGT  630

seq1  GCCTGCATTATCAAACCTACTAACACTCACAAGCTAGCCCTAAACTAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCATTATCAAACCTACTAACACTCACAAGCTAGCCCTAAACTAATT  680

seq1  AGAACAAAACCCAGCCACAACTCAAAACTCAGCTTCTCTTAGCATTCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAAACCCAGCCACAACTCAAAACTCAGCTTCTCTTAGCATTCTTC  730

seq1  GCATATGGCATGAAGAACAGAGTAAGGGTGGGGGTGGGGGCCCATGTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGGCATGAAGAACAGAGTAAGGGTGGGGGTGGGGGCCCATGTTTT  780

seq1  TATAACTAGGGAAATAAAAATAACTTATTTTTTAGACACTTAAATATATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTAGGGAAATAAAAATAACTTATTTTTTAGACACTTAAATATATT  830

seq1  AAATTAGTGTTGTTGTAAAATAAAGCAAATGGAAAAAATATTGAGTAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGTGTTGTTGTAAAATAAAGCAAATGGAAAAAATATTGAGTAACA  880

seq1  CTAAAAAAGGAAATTATACATTAAGTTTCAAATTCATTAAATAATATTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAAGGAAATTATACATTAAGTTTCAAATTCATTAAATAATATTTT  930

seq1  TAAATGAAGTTTGTCTTTATTCTGTGTGCATTTTTGTCCTATGCTGCTAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAAGTTTGTCTTTATTCTGTGTGCATTTTTGTCCTATGCTGCTAC  980

seq1  TTTTAAATATCTTCTCCTTTTTCCTATGTAGGTAGGAATTTTTGTGTACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATATCTTCTCCTTTTTCCTATGTAGGTAGGAATTTTTGTGTACA  1030

seq1  TAGATTTTTGTTTAAAACTTCCCCATTTTACCTTGATGAAGAGGGTGAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTTTGTTTAAAACTTCCCCATTTTACCTTGATGAAGAGGGTGAAT  1080

seq1  TC  1102
      ||
seq2  TC  1082